Wall clock time and date at job start Tue Mar 31 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47284 * 2 1 4 4 C 1.52995 * 109.47284 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47131 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46634 * 304.99798 * 5 4 3 7 7 C 1.52998 * 109.47039 * 64.99708 * 5 4 3 8 8 C 1.53002 * 109.47012 * 185.65227 * 7 5 4 9 9 C 1.50699 * 109.46940 * 184.99881 * 5 4 3 10 10 O 1.21280 * 120.00078 * 261.20344 * 9 5 4 11 11 N 1.34780 * 120.00020 * 81.20815 * 9 5 4 12 12 C 1.46973 * 120.59070 * 4.33092 * 11 9 5 13 13 C 1.53806 * 108.39832 * 124.75872 * 12 11 9 14 14 N 1.46964 * 108.58272 * 49.62960 * 13 12 11 15 15 C 1.36941 * 120.59015 * 124.62271 * 14 13 12 16 16 H 1.07996 * 120.00068 * 321.27678 * 15 14 13 17 17 C 1.38815 * 119.99323 * 141.27643 * 15 14 13 18 18 N 1.31618 * 120.00358 * 355.63054 * 17 15 14 19 19 Si 1.86808 * 119.99420 * 175.62691 * 17 15 14 20 20 H 1.48491 * 109.47335 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46832 * 120.00315 * 19 17 15 22 22 H 1.48500 * 109.46807 * 239.99538 * 19 17 15 23 23 C 1.46967 * 118.81381 * 304.65141 * 14 13 12 24 24 C 1.46955 * 120.59474 * 184.60383 * 11 9 5 25 25 H 1.08995 * 109.47232 * 299.99746 * 1 2 3 26 26 H 1.09000 * 109.47289 * 59.99897 * 1 2 3 27 27 H 1.09004 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47265 * 240.00429 * 2 1 3 29 29 H 1.09000 * 109.47289 * 120.00103 * 2 1 3 30 30 H 1.09000 * 109.47041 * 300.00254 * 3 2 1 31 31 H 1.09005 * 109.46619 * 60.00033 * 3 2 1 32 32 H 1.09005 * 109.46978 * 299.99770 * 4 3 2 33 33 H 1.08995 * 109.47232 * 60.00254 * 4 3 2 34 34 H 1.08997 * 109.47248 * 305.65484 * 7 5 4 35 35 H 1.09003 * 109.47375 * 65.65798 * 7 5 4 36 36 H 1.09001 * 109.47280 * 304.55182 * 8 7 5 37 37 H 1.09003 * 109.46839 * 64.54664 * 8 7 5 38 38 H 1.08998 * 109.47369 * 184.54812 * 8 7 5 39 39 H 1.08997 * 109.60543 * 244.54051 * 12 11 9 40 40 H 1.08999 * 109.61010 * 5.04550 * 12 11 9 41 41 H 1.09011 * 109.74042 * 289.84334 * 13 12 11 42 42 H 1.09000 * 109.53388 * 169.29763 * 13 12 11 43 43 H 0.97000 * 119.99667 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.60921 * 295.47624 * 23 14 13 45 45 H 1.08995 * 109.74787 * 175.05228 * 23 14 13 46 46 H 1.09007 * 109.61148 * 354.95038 * 24 11 9 47 47 H 1.09003 * 109.60878 * 115.46363 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6450 3.4245 -0.8414 7 6 3.6757 3.5683 1.3079 8 6 4.0612 5.0479 1.2507 9 6 5.5818 2.8869 -0.1244 10 8 6.2721 3.0174 0.8642 11 7 6.1580 2.7436 -1.3344 12 6 5.3362 2.6796 -2.5513 13 6 5.8212 3.7693 -3.5224 14 7 7.2820 3.6682 -3.6480 15 6 7.8672 3.5216 -4.8774 16 1 7.4041 2.8943 -5.6246 17 6 9.0558 4.1794 -5.1629 18 7 9.5753 5.0108 -4.2848 19 14 9.9179 3.8844 -6.7937 20 1 9.1349 2.9131 -7.5990 21 1 10.0274 5.1666 -7.5348 22 1 11.2766 3.3396 -6.5438 23 6 8.1033 3.7265 -2.4307 24 6 7.6186 2.6425 -1.4601 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.9337 0.9286 0.8892 33 1 3.9329 0.9289 -0.8908 34 1 2.5983 3.4786 1.4468 35 1 4.1906 3.0908 2.1416 36 1 5.1251 5.1380 1.0313 37 1 3.4857 5.5432 0.4685 38 1 3.8473 5.5165 2.2112 39 1 5.4440 1.6988 -3.0143 40 1 4.2908 2.8535 -2.2963 41 1 5.5545 4.7528 -3.1352 42 1 5.3589 3.6198 -4.4981 43 1 10.4057 5.4706 -4.4846 44 1 7.9992 4.7068 -1.9658 45 1 9.1489 3.5506 -2.6832 46 1 8.0810 2.7919 -0.4843 47 1 7.8853 1.6590 -1.8473 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109444074.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:53 Heat of formation + Delta-G solvation = -58.085337 kcal Electronic energy + Delta-G solvation = -23540.280393 eV Core-core repulsion = 20335.927508 eV Total energy + Delta-G solvation = -3204.352884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.36583 -38.64244 -37.38059 -35.61501 -34.83420 -33.07441 -32.13857 -31.28941 -28.88785 -27.57128 -25.49584 -24.57145 -23.75845 -23.23899 -21.93087 -21.30226 -19.81112 -18.81845 -17.91534 -16.86504 -16.77903 -16.37559 -16.21083 -15.49765 -15.41249 -15.21224 -14.97475 -14.81830 -14.63472 -14.49937 -14.00168 -13.73307 -13.45313 -13.37599 -13.08166 -12.92565 -12.77126 -12.47637 -12.42944 -12.27926 -12.14475 -12.05649 -11.98669 -11.94371 -11.84316 -11.65700 -11.54327 -11.43796 -11.17590 -10.63062 -10.51432 -9.76690 -8.53287 -7.89593 -5.52707 1.46486 1.48025 1.58686 1.68912 2.09109 2.48564 3.27136 3.50531 3.59861 3.78212 3.89015 4.13725 4.20598 4.23415 4.27189 4.36759 4.39191 4.44058 4.47617 4.56549 4.64805 4.67078 4.71829 4.79796 4.81374 4.90009 4.93524 4.95597 5.05680 5.10514 5.12923 5.16286 5.22900 5.25646 5.33080 5.40093 5.42443 5.46277 5.51717 5.58996 5.62327 5.68176 6.40580 6.57426 7.10928 7.25228 7.75224 8.34733 9.14700 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022411 B = 0.004046 C = 0.003663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.094377 B = 6918.573157 C = 7642.506207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.102 4.102 5 C -0.100 4.100 6 H 0.109 0.891 7 C -0.101 4.101 8 C -0.154 4.154 9 C 0.509 3.491 10 O -0.592 6.592 11 N -0.603 5.603 12 C 0.099 3.901 13 C 0.126 3.874 14 N -0.608 5.608 15 C -0.269 4.269 16 H 0.072 0.928 17 C -0.043 4.043 18 N -0.936 5.936 19 Si 0.972 3.028 20 H -0.260 1.260 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.177 3.823 24 C 0.100 3.900 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.022 0.978 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.116 0.884 41 H 0.013 0.987 42 H 0.080 0.920 43 H 0.251 0.749 44 H -0.012 1.012 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.461 -7.883 7.337 21.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.150 4.150 4 C -0.140 4.140 5 C -0.121 4.121 6 H 0.127 0.873 7 C -0.139 4.139 8 C -0.211 4.211 9 C 0.299 3.701 10 O -0.473 6.473 11 N -0.335 5.335 12 C -0.025 4.025 13 C 0.000 4.000 14 N -0.332 5.332 15 C -0.399 4.399 16 H 0.089 0.911 17 C -0.239 4.239 18 N -0.581 5.581 19 Si 0.799 3.201 20 H -0.184 1.184 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.050 3.950 24 C -0.024 4.024 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.031 0.969 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.006 0.994 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.964 -7.725 7.802 21.053 hybrid contribution 1.454 0.378 -0.761 1.684 sum -16.510 -7.347 7.041 19.394 Atomic orbital electron populations 1.21763 0.95199 1.01807 1.02119 1.21529 0.96371 0.96586 1.01899 1.21645 0.92645 0.97399 1.03303 1.21497 0.97388 0.92662 1.02446 1.21503 0.89027 0.99980 1.01611 0.87311 1.21437 1.02281 0.94831 0.95351 1.21792 1.00088 0.96855 1.02360 1.21425 0.92167 0.74637 0.81826 1.90607 1.66341 1.52195 1.38130 1.48174 1.07094 1.71067 1.07135 1.22524 0.95284 1.00152 0.84508 1.21582 0.84619 0.95329 0.98470 1.44111 1.01245 1.85539 1.02333 1.19519 1.06430 1.22246 0.91690 0.91089 1.26202 1.00997 0.95948 1.00762 1.70128 1.20845 1.30487 1.36606 0.85146 0.77952 0.77315 0.79647 1.18416 1.21883 1.21856 1.20754 0.95779 0.92731 0.85685 1.22076 0.80952 0.99774 0.99640 0.92466 0.92385 0.92671 0.92160 0.92432 0.90654 0.90769 0.92402 0.91470 0.88057 0.92723 0.95893 0.91738 0.91637 0.90733 0.86622 0.96937 0.90153 0.93984 0.99353 0.92090 0.91180 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.13 -1.65 5.93 30.59 0.18 -1.47 16 3 C -0.11 -1.52 4.98 30.59 0.15 -1.36 16 4 C -0.10 -1.92 4.55 30.59 0.14 -1.78 16 5 C -0.10 -2.34 1.35 -11.54 -0.02 -2.35 16 6 H 0.11 2.19 6.29 -2.39 -0.02 2.18 16 7 C -0.10 -2.24 4.95 30.59 0.15 -2.09 16 8 C -0.15 -3.78 9.75 71.98 0.70 -3.08 16 9 C 0.51 17.39 6.10 87.66 0.53 17.93 16 10 O -0.59 -24.76 14.52 -3.03 -0.04 -24.80 16 11 N -0.60 -21.59 2.94 -817.16 -2.40 -24.00 16 12 C 0.10 2.98 6.03 86.56 0.52 3.50 16 13 C 0.13 4.89 6.69 86.56 0.58 5.46 16 14 N -0.61 -30.13 2.93 -697.35 -2.04 -32.17 16 15 C -0.27 -14.33 9.50 84.03 0.80 -13.53 16 16 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 17 C -0.04 -2.36 5.15 84.86 0.44 -1.92 16 18 N -0.94 -55.55 11.24 21.65 0.24 -55.31 16 19 Si 0.97 43.89 29.56 68.60 2.03 45.92 16 20 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 23 C 0.18 8.91 5.41 86.41 0.47 9.38 16 24 C 0.10 4.20 6.60 86.42 0.57 4.77 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.91 6.45 -2.38 -0.02 0.89 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.30 7.68 -2.39 -0.02 1.28 16 34 H 0.10 1.57 6.32 -2.39 -0.02 1.56 16 35 H 0.05 1.41 7.68 -2.39 -0.02 1.39 16 36 H 0.02 0.73 6.70 -2.39 -0.02 0.71 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 40 H 0.12 2.55 5.38 -2.39 -0.01 2.53 16 41 H 0.01 0.51 8.14 -2.38 -0.02 0.50 16 42 H 0.08 2.86 7.93 -2.39 -0.02 2.84 16 43 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 44 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 45 H 0.06 3.41 6.41 -2.39 -0.02 3.40 16 46 H 0.07 3.03 6.99 -2.38 -0.02 3.02 16 47 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -68.15 359.23 4.63 -63.52 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.91 Total: 14.35 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.93 Total: 12.48 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -4.20 Total: -111.47 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.04 Total: -24.80 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.15 4.63 -63.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444074.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.433 kcal (2) G-P(sol) polarization free energy of solvation -68.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds