Wall clock time and date at job start Tue Mar 31 2020 05:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46967 * 2 1 4 4 C 1.53003 * 109.47333 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47535 * 183.43803 * 4 3 2 6 6 H 1.09001 * 109.46944 * 54.80295 * 5 4 3 7 7 C 1.53004 * 109.47196 * 294.80904 * 5 4 3 8 8 C 1.53000 * 109.46791 * 297.48421 * 7 5 4 9 9 C 1.50689 * 109.47187 * 174.80269 * 5 4 3 10 10 O 1.21285 * 120.00534 * 6.73066 * 9 5 4 11 11 N 1.34781 * 120.00153 * 186.73287 * 9 5 4 12 12 C 1.46965 * 120.58958 * 3.02410 * 11 9 5 13 13 C 1.53818 * 108.39453 * 124.76336 * 12 11 9 14 14 N 1.46970 * 108.57821 * 49.64026 * 13 12 11 15 15 C 1.36930 * 120.59413 * 124.66846 * 14 13 12 16 16 H 1.08006 * 119.99731 * 208.91752 * 15 14 13 17 17 C 1.38814 * 120.00372 * 28.92304 * 15 14 13 18 18 N 1.31624 * 119.99737 * 17.36432 * 17 15 14 19 19 Si 1.86796 * 120.00445 * 197.36877 * 17 15 14 20 20 H 1.48497 * 109.47257 * 89.99442 * 19 17 15 21 21 H 1.48501 * 109.47280 * 210.00074 * 19 17 15 22 22 H 1.48500 * 109.46786 * 329.99737 * 19 17 15 23 23 C 1.46971 * 118.80981 * 304.64431 * 14 13 12 24 24 C 1.46961 * 120.59815 * 183.31551 * 11 9 5 25 25 H 1.09001 * 109.46853 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47326 * 299.99599 * 1 2 3 27 27 H 1.09002 * 109.47284 * 60.00150 * 1 2 3 28 28 H 1.09009 * 109.47262 * 240.00294 * 2 1 3 29 29 H 1.08996 * 109.47652 * 120.00032 * 2 1 3 30 30 H 1.09001 * 109.47192 * 60.00002 * 3 2 1 31 31 H 1.09005 * 109.47477 * 300.00194 * 3 2 1 32 32 H 1.09008 * 109.46780 * 63.44196 * 4 3 2 33 33 H 1.08995 * 109.47018 * 303.44425 * 4 3 2 34 34 H 1.08998 * 109.47138 * 57.48367 * 7 5 4 35 35 H 1.08996 * 109.46691 * 177.49025 * 7 5 4 36 36 H 1.09003 * 109.47538 * 305.34405 * 8 7 5 37 37 H 1.09000 * 109.47266 * 65.33635 * 8 7 5 38 38 H 1.08998 * 109.47340 * 185.33886 * 8 7 5 39 39 H 1.08997 * 109.61786 * 244.54390 * 12 11 9 40 40 H 1.09002 * 109.61107 * 5.06106 * 12 11 9 41 41 H 1.09000 * 109.74242 * 289.85199 * 13 12 11 42 42 H 1.09002 * 109.53568 * 169.30244 * 13 12 11 43 43 H 0.96994 * 119.99981 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.60808 * 295.48776 * 23 14 13 45 45 H 1.08995 * 109.74952 * 175.05478 * 23 14 13 46 46 H 1.09002 * 109.60569 * 354.94273 * 24 11 9 47 47 H 1.09000 * 109.61119 * 115.45419 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8825 0.0871 6 1 3.6423 3.3713 0.9576 7 6 3.6799 3.6422 -1.1792 8 6 4.3450 2.9934 -2.3947 9 6 5.5813 2.8767 0.2164 10 8 6.1948 1.8354 0.1148 11 7 6.2425 4.0288 0.4448 12 6 5.5081 5.2874 0.6359 13 6 5.9383 5.9013 1.9790 14 7 7.4067 5.9226 2.0352 15 6 8.0784 7.0930 2.2672 16 1 9.0721 7.2337 1.8680 17 6 7.4823 8.0988 3.0155 18 7 6.4465 7.8244 3.7799 19 14 8.1500 9.8417 2.9377 20 1 7.4650 10.5860 1.8505 21 1 7.9064 10.5235 4.2342 22 1 9.6094 9.8009 2.6663 23 6 8.1413 4.6649 1.8385 24 6 7.7109 4.0501 0.5009 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9829 -0.9184 33 1 3.9330 0.8764 0.8584 34 1 2.5967 3.6082 -1.2964 35 1 4.0042 4.6796 -1.0982 36 1 5.4221 2.9417 -2.2352 37 1 3.9494 1.9869 -2.5313 38 1 4.1376 3.5891 -3.2836 39 1 5.7437 5.9754 -0.1760 40 1 4.4367 5.0873 0.6498 41 1 5.5494 5.2993 2.8003 42 1 5.5546 6.9188 2.0543 43 1 6.0297 8.5273 4.3025 44 1 7.9092 3.9750 2.6498 45 1 9.2130 4.8630 1.8220 46 1 8.0946 3.0326 0.4257 47 1 8.0997 4.6521 -0.3204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109444076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:58 Heat of formation + Delta-G solvation = -37.480632 kcal Electronic energy + Delta-G solvation = -23590.639126 eV Core-core repulsion = 20387.179728 eV Total energy + Delta-G solvation = -3203.459397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.07297 -37.19869 -36.25664 -34.29387 -33.67701 -31.30505 -30.17950 -30.07955 -27.53345 -26.42409 -23.80560 -23.68254 -22.71143 -21.94599 -20.85690 -19.58002 -18.32312 -16.98447 -16.18110 -15.82634 -15.61214 -15.14350 -14.76320 -14.38743 -13.99540 -13.77828 -13.67269 -13.30077 -13.18637 -13.10079 -12.96427 -12.69855 -12.32250 -12.19647 -11.61870 -11.51250 -11.44738 -11.34290 -10.99194 -10.94778 -10.85773 -10.80778 -10.74287 -10.57121 -10.42562 -10.33188 -10.22028 -10.00353 -9.83945 -9.16713 -8.60164 -8.19690 -6.71369 -5.87181 -3.32023 3.07000 3.32979 3.40243 3.41314 3.50381 4.42923 4.63497 4.71273 4.83887 4.99549 5.04107 5.06369 5.24213 5.30009 5.33530 5.38513 5.45591 5.61579 5.65369 5.69965 5.74896 5.80366 5.81548 5.89554 5.90150 5.96166 5.98148 6.02679 6.08212 6.14111 6.19177 6.21234 6.26657 6.30842 6.39519 6.45469 6.49406 6.79742 6.95094 7.21785 7.43796 7.71309 7.98243 8.34807 8.64279 9.10729 9.73120 10.30937 11.20483 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.003866 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.922233 B = 7241.588412 C = 7618.073672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.099 4.099 5 C -0.108 4.108 6 H 0.094 0.906 7 C -0.120 4.120 8 C -0.153 4.153 9 C 0.517 3.483 10 O -0.561 6.561 11 N -0.596 5.596 12 C 0.078 3.922 13 C 0.158 3.842 14 N -0.591 5.591 15 C -0.256 4.256 16 H 0.067 0.933 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.132 3.868 24 C 0.095 3.905 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.098 0.902 43 H 0.255 0.745 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 -9.802 -9.349 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.137 4.137 5 C -0.129 4.129 6 H 0.112 0.888 7 C -0.157 4.157 8 C -0.210 4.210 9 C 0.305 3.695 10 O -0.441 6.441 11 N -0.328 5.328 12 C -0.046 4.046 13 C 0.031 3.969 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.005 3.995 24 C -0.029 4.029 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.041 0.959 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.462 -10.205 -9.266 16.719 hybrid contribution 0.287 1.098 0.144 1.144 sum -9.176 -9.107 -9.123 15.822 Atomic orbital electron populations 1.21779 0.96110 1.01340 1.01735 1.21522 0.95531 0.97138 1.02042 1.21688 0.95432 0.96628 1.02096 1.21416 0.94396 0.94548 1.03341 1.21362 0.92816 0.98600 1.00137 0.88842 1.21645 1.00995 0.99702 0.93383 1.21815 1.01150 1.00644 0.97365 1.20516 0.89767 0.83219 0.75961 1.90619 1.69710 1.31323 1.52407 1.48043 1.07350 1.08090 1.69309 1.22853 0.95210 0.84738 1.01791 1.21256 0.84452 1.01052 0.90111 1.43978 1.01133 1.03093 1.83180 1.19213 1.00985 0.91631 1.26669 0.91507 1.25085 0.98901 0.99487 0.96046 1.70022 1.24824 1.31878 1.27868 0.86258 0.78695 0.84634 0.76991 1.21350 1.21727 1.20386 1.21287 0.96323 0.88836 0.93041 1.22171 0.79492 1.01294 0.99935 0.93024 0.92763 0.92873 0.92144 0.92044 0.91973 0.91805 0.91084 0.91510 0.90889 0.90874 0.92627 0.92426 0.92839 0.91926 0.90677 0.95871 0.88408 0.93497 0.95947 0.91645 0.90111 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.18 4.89 -26.73 -0.13 -1.31 16 4 C -0.10 -1.22 3.82 -26.73 -0.10 -1.32 16 5 C -0.11 -1.45 1.65 -91.77 -0.15 -1.60 16 6 H 0.09 1.23 7.22 -51.93 -0.38 0.85 16 7 C -0.12 -1.38 5.16 -26.73 -0.14 -1.51 16 8 C -0.15 -1.79 9.30 37.16 0.35 -1.44 16 9 C 0.52 8.98 5.53 -10.99 -0.06 8.92 16 10 O -0.56 -11.26 15.40 5.55 0.09 -11.18 16 11 N -0.60 -10.81 2.94 -172.22 -0.51 -11.32 16 12 C 0.08 1.39 5.26 -3.36 -0.02 1.37 16 13 C 0.16 3.57 5.52 -3.36 -0.02 3.55 16 14 N -0.59 -14.44 2.96 -171.75 -0.51 -14.95 16 15 C -0.26 -6.80 9.57 -15.06 -0.14 -6.94 16 16 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 17 C 0.00 0.10 4.90 -17.43 -0.09 0.01 16 18 N -0.90 -25.28 11.25 55.49 0.62 -24.66 16 19 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.13 2.81 6.67 -3.59 -0.02 2.79 16 24 C 0.10 1.79 6.59 -3.60 -0.02 1.76 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.58 6.68 -51.93 -0.35 0.23 16 32 H 0.07 0.91 6.36 -51.92 -0.33 0.58 16 33 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 34 H 0.07 0.70 6.53 -51.93 -0.34 0.36 16 35 H 0.07 0.87 5.81 -51.93 -0.30 0.57 16 36 H 0.05 0.79 6.95 -51.93 -0.36 0.43 16 37 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.13 4.79 -51.93 -0.25 0.88 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 2.43 6.05 -51.93 -0.31 2.11 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 46 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -29.74 353.97 -8.70 -38.44 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.35 Total: 0.16 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.34 Total: 2.17 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.39 Total: -50.93 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.74 -8.70 -38.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.957 kcal (2) G-P(sol) polarization free energy of solvation -29.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds