Wall clock time and date at job start Tue Mar 31 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46967 * 2 1 4 4 C 1.53003 * 109.47333 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47535 * 183.43803 * 4 3 2 6 6 H 1.09001 * 109.46944 * 54.80295 * 5 4 3 7 7 C 1.53004 * 109.47196 * 294.80904 * 5 4 3 8 8 C 1.53000 * 109.46791 * 297.48421 * 7 5 4 9 9 C 1.50689 * 109.47187 * 174.80269 * 5 4 3 10 10 O 1.21285 * 120.00534 * 6.73066 * 9 5 4 11 11 N 1.34781 * 120.00153 * 186.73287 * 9 5 4 12 12 C 1.46965 * 120.58958 * 3.02410 * 11 9 5 13 13 C 1.53818 * 108.39453 * 124.76336 * 12 11 9 14 14 N 1.46970 * 108.57821 * 49.64026 * 13 12 11 15 15 C 1.36930 * 120.59413 * 124.66846 * 14 13 12 16 16 H 1.08006 * 119.99731 * 208.91752 * 15 14 13 17 17 C 1.38814 * 120.00372 * 28.92304 * 15 14 13 18 18 N 1.31624 * 119.99737 * 17.36432 * 17 15 14 19 19 Si 1.86796 * 120.00445 * 197.36877 * 17 15 14 20 20 H 1.48497 * 109.47257 * 89.99442 * 19 17 15 21 21 H 1.48501 * 109.47280 * 210.00074 * 19 17 15 22 22 H 1.48500 * 109.46786 * 329.99737 * 19 17 15 23 23 C 1.46971 * 118.80981 * 304.64431 * 14 13 12 24 24 C 1.46961 * 120.59815 * 183.31551 * 11 9 5 25 25 H 1.09001 * 109.46853 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47326 * 299.99599 * 1 2 3 27 27 H 1.09002 * 109.47284 * 60.00150 * 1 2 3 28 28 H 1.09009 * 109.47262 * 240.00294 * 2 1 3 29 29 H 1.08996 * 109.47652 * 120.00032 * 2 1 3 30 30 H 1.09001 * 109.47192 * 60.00002 * 3 2 1 31 31 H 1.09005 * 109.47477 * 300.00194 * 3 2 1 32 32 H 1.09008 * 109.46780 * 63.44196 * 4 3 2 33 33 H 1.08995 * 109.47018 * 303.44425 * 4 3 2 34 34 H 1.08998 * 109.47138 * 57.48367 * 7 5 4 35 35 H 1.08996 * 109.46691 * 177.49025 * 7 5 4 36 36 H 1.09003 * 109.47538 * 305.34405 * 8 7 5 37 37 H 1.09000 * 109.47266 * 65.33635 * 8 7 5 38 38 H 1.08998 * 109.47340 * 185.33886 * 8 7 5 39 39 H 1.08997 * 109.61786 * 244.54390 * 12 11 9 40 40 H 1.09002 * 109.61107 * 5.06106 * 12 11 9 41 41 H 1.09000 * 109.74242 * 289.85199 * 13 12 11 42 42 H 1.09002 * 109.53568 * 169.30244 * 13 12 11 43 43 H 0.96994 * 119.99981 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.60808 * 295.48776 * 23 14 13 45 45 H 1.08995 * 109.74952 * 175.05478 * 23 14 13 46 46 H 1.09002 * 109.60569 * 354.94273 * 24 11 9 47 47 H 1.09000 * 109.61119 * 115.45419 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8825 0.0871 6 1 3.6423 3.3713 0.9576 7 6 3.6799 3.6422 -1.1792 8 6 4.3450 2.9934 -2.3947 9 6 5.5813 2.8767 0.2164 10 8 6.1948 1.8354 0.1148 11 7 6.2425 4.0288 0.4448 12 6 5.5081 5.2874 0.6359 13 6 5.9383 5.9013 1.9790 14 7 7.4067 5.9226 2.0352 15 6 8.0784 7.0930 2.2672 16 1 9.0721 7.2337 1.8680 17 6 7.4823 8.0988 3.0155 18 7 6.4465 7.8244 3.7799 19 14 8.1500 9.8417 2.9377 20 1 7.4650 10.5860 1.8505 21 1 7.9064 10.5235 4.2342 22 1 9.6094 9.8009 2.6663 23 6 8.1413 4.6649 1.8385 24 6 7.7109 4.0501 0.5009 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9829 -0.9184 33 1 3.9330 0.8764 0.8584 34 1 2.5967 3.6082 -1.2964 35 1 4.0042 4.6796 -1.0982 36 1 5.4221 2.9417 -2.2352 37 1 3.9494 1.9869 -2.5313 38 1 4.1376 3.5891 -3.2836 39 1 5.7437 5.9754 -0.1760 40 1 4.4367 5.0873 0.6498 41 1 5.5494 5.2993 2.8003 42 1 5.5546 6.9188 2.0543 43 1 6.0297 8.5273 4.3025 44 1 7.9092 3.9750 2.6498 45 1 9.2130 4.8630 1.8220 46 1 8.0946 3.0326 0.4257 47 1 8.0997 4.6521 -0.3204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109444076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:57 Heat of formation + Delta-G solvation = -53.244878 kcal Electronic energy + Delta-G solvation = -23591.322715 eV Core-core repulsion = 20387.179728 eV Total energy + Delta-G solvation = -3204.142986 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44565 -38.69123 -37.46228 -35.68197 -34.92841 -33.12273 -31.85676 -30.96078 -29.01203 -27.73127 -25.53067 -24.77235 -24.13385 -23.15441 -21.96703 -20.93102 -19.79657 -18.58522 -17.65853 -17.12297 -16.88028 -16.60922 -16.26206 -15.52703 -15.49454 -15.31116 -15.06009 -14.87698 -14.57395 -14.12970 -14.03424 -13.67781 -13.54105 -13.33860 -13.26082 -12.97606 -12.66396 -12.51998 -12.40018 -12.30834 -12.22322 -12.05617 -11.96426 -11.79506 -11.72398 -11.65678 -11.64645 -11.37888 -11.22972 -10.64441 -10.51496 -9.79726 -8.65785 -7.89394 -5.38469 1.48970 1.50377 1.59050 1.68983 2.08588 2.51116 3.24840 3.50262 3.58503 3.75389 3.91384 4.12906 4.20136 4.21771 4.22851 4.32723 4.33887 4.40523 4.52137 4.57096 4.60173 4.67141 4.72334 4.75628 4.80101 4.86713 4.88993 4.93970 5.03913 5.08267 5.10298 5.17520 5.20231 5.25322 5.29000 5.31364 5.45681 5.50123 5.52996 5.58971 5.61663 5.66790 6.34937 6.54474 7.10117 7.22670 7.77138 8.31662 9.15666 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025404 B = 0.003866 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.922233 B = 7241.588412 C = 7618.073672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.093 4.093 5 C -0.105 4.105 6 H 0.101 0.899 7 C -0.115 4.115 8 C -0.150 4.150 9 C 0.514 3.486 10 O -0.590 6.590 11 N -0.602 5.602 12 C 0.096 3.904 13 C 0.163 3.837 14 N -0.608 5.608 15 C -0.267 4.267 16 H 0.067 0.933 17 C -0.044 4.044 18 N -0.932 5.932 19 Si 0.969 3.031 20 H -0.281 1.281 21 H -0.296 1.296 22 H -0.272 1.272 23 C 0.133 3.867 24 C 0.105 3.895 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.108 0.892 41 H -0.002 1.002 42 H 0.075 0.925 43 H 0.252 0.748 44 H 0.005 0.995 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.088 -9.480 -10.954 18.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.131 4.131 5 C -0.126 4.126 6 H 0.119 0.881 7 C -0.153 4.153 8 C -0.207 4.207 9 C 0.305 3.695 10 O -0.472 6.472 11 N -0.334 5.334 12 C -0.027 4.027 13 C 0.037 3.963 14 N -0.332 5.332 15 C -0.397 4.397 16 H 0.085 0.915 17 C -0.240 4.240 18 N -0.577 5.577 19 Si 0.798 3.202 20 H -0.207 1.207 21 H -0.223 1.223 22 H -0.197 1.197 23 C 0.007 3.993 24 C -0.019 4.019 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.120 0.880 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.016 0.984 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.023 0.977 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.821 -9.900 -10.891 18.268 hybrid contribution 0.758 0.913 0.680 1.368 sum -10.062 -8.987 -10.211 16.920 Atomic orbital electron populations 1.21760 0.94971 1.01894 1.02128 1.21525 0.96506 0.96596 1.01738 1.21647 0.93149 0.97358 1.02964 1.21363 0.96311 0.93380 1.02060 1.21452 0.89566 0.99893 1.01661 0.88125 1.21676 1.02732 0.98989 0.91869 1.21791 0.99202 1.01473 0.98242 1.21264 0.91421 0.82239 0.74625 1.90601 1.70775 1.32253 1.53552 1.48130 1.07092 1.08594 1.69561 1.22642 0.96842 0.84408 0.98833 1.21115 0.83585 0.99645 0.91999 1.44250 1.02006 1.03544 1.83378 1.19506 1.01252 0.92593 1.26366 0.91481 1.25810 0.99417 1.02892 0.95893 1.70166 1.26103 1.32685 1.28766 0.85242 0.78353 0.80093 0.76557 1.20695 1.22318 1.19666 1.21334 0.96549 0.87546 0.93914 1.21964 0.80375 1.01149 0.98431 0.92481 0.92702 0.92120 0.92075 0.92859 0.91658 0.90251 0.91718 0.93619 0.87971 0.90988 0.95526 0.91859 0.91113 0.91197 0.87423 0.98426 0.90715 0.93846 0.97685 0.91079 0.89950 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.13 -2.04 5.93 30.59 0.18 -1.85 16 3 C -0.11 -1.94 4.89 30.59 0.15 -1.79 16 4 C -0.09 -2.17 3.82 30.60 0.12 -2.05 16 5 C -0.10 -2.62 1.65 -11.54 -0.02 -2.64 16 6 H 0.10 2.41 7.22 -2.39 -0.02 2.40 16 7 C -0.12 -2.29 5.16 30.60 0.16 -2.13 16 8 C -0.15 -3.16 9.30 71.98 0.67 -2.49 16 9 C 0.51 17.47 5.53 87.65 0.48 17.96 16 10 O -0.59 -23.69 15.40 -3.04 -0.05 -23.74 16 11 N -0.60 -21.40 2.94 -817.15 -2.40 -23.80 16 12 C 0.10 3.31 5.26 86.57 0.46 3.77 16 13 C 0.16 7.43 5.52 86.57 0.48 7.91 16 14 N -0.61 -30.04 2.96 -697.30 -2.07 -32.10 16 15 C -0.27 -14.28 9.57 84.04 0.80 -13.48 16 16 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 17 C -0.04 -2.38 4.90 84.86 0.42 -1.96 16 18 N -0.93 -53.03 11.25 21.65 0.24 -52.79 16 19 Si 0.97 43.29 29.59 68.60 2.03 45.32 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 C 0.13 5.72 6.67 86.41 0.58 6.30 16 24 C 0.11 3.91 6.59 86.42 0.57 4.48 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 0.97 8.14 -2.38 -0.02 0.96 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.13 6.68 -2.38 -0.02 1.11 16 32 H 0.06 1.58 6.36 -2.38 -0.02 1.57 16 33 H 0.04 1.24 8.05 -2.39 -0.02 1.22 16 34 H 0.10 1.50 6.53 -2.39 -0.02 1.48 16 35 H 0.07 1.48 5.81 -2.39 -0.01 1.46 16 36 H 0.03 0.71 6.95 -2.39 -0.02 0.69 16 37 H 0.06 1.25 6.66 -2.39 -0.02 1.23 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.11 2.98 4.79 -2.39 -0.01 2.97 16 41 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.07 3.76 6.05 -2.39 -0.01 3.75 16 43 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.07 2.91 7.94 -2.39 -0.02 2.89 16 46 H 0.08 3.04 6.99 -2.39 -0.02 3.03 16 47 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -64.49 353.97 4.43 -60.06 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.92 Total: 16.32 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 5.75 Total: 10.74 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -4.23 Total: -108.69 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -64.49 4.43 -60.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109444076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.811 kcal (2) G-P(sol) polarization free energy of solvation -64.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds