Wall clock time and date at job start Tue Mar 31 2020 05:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47048 * 2 1 4 4 C 1.53006 * 109.47003 * 239.99902 * 2 1 3 5 5 C 1.52998 * 109.47465 * 120.00091 * 2 1 3 6 6 N 1.46906 * 109.46789 * 35.67509 * 5 2 1 7 7 C 1.46895 * 111.00047 * 288.36199 * 6 5 2 8 8 C 1.50693 * 109.47550 * 314.36960 * 7 6 5 9 9 H 1.08006 * 119.99734 * 4.71324 * 8 7 6 10 10 C 1.37874 * 120.00444 * 184.70662 * 8 7 6 11 11 N 1.31518 * 119.99994 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00371 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46998 * 89.99954 * 12 10 8 14 14 H 1.48500 * 109.47267 * 210.00432 * 12 10 8 15 15 H 1.48505 * 109.46672 * 330.00216 * 12 10 8 16 16 C 1.46905 * 110.99772 * 52.32077 * 6 5 2 17 17 C 1.52998 * 109.47189 * 60.60984 * 16 6 5 18 18 N 1.46503 * 109.46921 * 179.97438 * 17 16 6 19 19 C 1.46767 * 124.34845 * 89.99523 * 18 17 16 20 20 C 1.54478 * 105.55161 * 197.07836 * 19 18 17 21 21 C 1.54634 * 101.76228 * 334.54456 * 20 19 18 22 22 C 1.34616 * 124.47069 * 270.02509 * 18 17 16 23 23 O 1.21284 * 124.90877 * 359.55531 * 22 18 17 24 24 H 1.08996 * 109.47127 * 298.31504 * 1 2 3 25 25 H 1.08999 * 109.47199 * 58.31608 * 1 2 3 26 26 H 1.08998 * 109.47326 * 178.31787 * 1 2 3 27 27 H 1.09004 * 109.46613 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47185 * 299.99723 * 3 2 1 29 29 H 1.08994 * 109.47256 * 60.00663 * 3 2 1 30 30 H 1.08994 * 109.46960 * 323.27231 * 4 2 1 31 31 H 1.09001 * 109.46595 * 83.27059 * 4 2 1 32 32 H 1.09000 * 109.47122 * 203.26754 * 4 2 1 33 33 H 1.08999 * 109.47053 * 275.67877 * 5 2 1 34 34 H 1.08997 * 109.47466 * 155.67393 * 5 2 1 35 35 H 1.08999 * 109.46993 * 74.37102 * 7 6 5 36 36 H 1.09005 * 109.46731 * 194.36676 * 7 6 5 37 37 H 0.96993 * 120.00063 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.46663 * 300.60637 * 16 6 5 39 39 H 1.09001 * 109.46807 * 180.60974 * 16 6 5 40 40 H 1.08998 * 109.46871 * 60.00187 * 17 16 6 41 41 H 1.08994 * 109.46890 * 299.99575 * 17 16 6 42 42 H 1.09002 * 110.24071 * 78.03721 * 19 18 17 43 43 H 1.08996 * 110.24527 * 316.12924 * 19 18 17 44 44 H 1.08999 * 110.96754 * 92.65712 * 20 19 18 45 45 H 1.08998 * 110.97068 * 216.42799 * 20 19 18 46 46 H 1.08998 * 110.48451 * 143.47541 * 21 20 19 47 47 H 1.09002 * 110.48283 * 266.11710 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.1425 -1.8391 1.5699 7 6 -0.1408 -1.3508 2.0919 8 6 0.1103 -0.2760 3.1177 9 1 1.1169 0.0690 3.3031 10 6 -0.9447 0.2673 3.8196 11 7 -2.1704 -0.1530 3.5942 12 14 -0.6334 1.6003 5.0908 13 1 -0.7048 2.9325 4.4386 14 1 -1.6621 1.5160 6.1585 15 1 0.7141 1.4118 5.6857 16 6 0.9402 -2.7042 0.3999 17 6 2.2848 -3.2830 -0.0450 18 7 2.0829 -4.1461 -1.2114 19 6 2.1357 -3.6832 -2.6032 20 6 1.4495 -4.7900 -3.4341 21 6 1.6630 -6.0335 -2.5400 22 6 1.8245 -5.4657 -1.1472 23 8 1.7341 -6.1061 -0.1212 24 1 -0.3633 0.4874 0.9047 25 1 -0.3633 0.5398 -0.8745 26 1 -0.3634 -1.0272 -0.0302 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.3845 -1.5620 -1.4764 31 1 2.0475 -0.0287 -2.0910 32 1 3.0512 -1.0868 -1.0705 33 1 2.0653 -0.0239 2.0865 34 1 3.0440 -1.1030 1.0639 35 1 -0.7334 -0.9411 1.2740 36 1 -0.6822 -2.1758 2.5550 37 1 -2.9126 0.2289 4.0882 38 1 0.5090 -2.1203 -0.4133 39 1 0.2634 -3.5174 0.6620 40 1 2.7159 -3.8668 0.7683 41 1 2.9615 -2.4698 -0.3071 42 1 3.1711 -3.5603 -2.9207 43 1 1.5952 -2.7425 -2.7085 44 1 0.3877 -4.5797 -3.5626 45 1 1.9407 -4.9145 -4.3991 46 1 0.7941 -6.6900 -2.5860 47 1 2.5635 -6.5692 -2.8405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109812356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:02 Heat of formation + Delta-G solvation = 27.197518 kcal Electronic energy + Delta-G solvation = -24442.851095 eV Core-core repulsion = 21242.196353 eV Total energy + Delta-G solvation = -3200.654742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52787 -39.33259 -36.29446 -33.92276 -33.41705 -32.01404 -29.17593 -27.84735 -27.67133 -26.48921 -25.99525 -25.04267 -22.44896 -21.89060 -20.11070 -19.26841 -18.36400 -16.86945 -16.53270 -16.48496 -15.53157 -14.98053 -14.82848 -14.43035 -13.99039 -13.82453 -13.59770 -13.46370 -13.24577 -13.05239 -12.69507 -12.41533 -12.32768 -12.00170 -11.87498 -11.64954 -11.24546 -11.07785 -11.02474 -10.95997 -10.81563 -10.70940 -10.67905 -10.41883 -10.06646 -9.97723 -9.66070 -9.58319 -9.50509 -8.92067 -8.51356 -8.42562 -6.82189 -6.02136 -4.01555 2.68824 3.10812 3.30254 3.37931 3.41218 4.30564 4.35617 4.43122 4.65172 4.93665 5.07382 5.17533 5.29508 5.31049 5.34928 5.35779 5.43046 5.45892 5.53251 5.65764 5.68161 5.81180 5.84454 5.97186 6.02815 6.06777 6.12568 6.18667 6.26339 6.33905 6.45909 6.52523 6.55581 6.73594 6.77566 6.81633 6.95447 7.24191 7.29104 7.47142 7.53797 7.79199 8.12963 8.28743 8.31019 8.62869 9.05283 9.60835 11.08775 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.004892 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.569903 B = 5722.422477 C = 6376.060334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.093 4.093 3 C -0.134 4.134 4 C -0.159 4.159 5 C 0.061 3.939 6 N -0.529 5.529 7 C 0.147 3.853 8 C -0.507 4.507 9 H 0.065 0.935 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.890 3.110 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.021 3.979 17 C 0.116 3.884 18 N -0.615 5.615 19 C 0.094 3.906 20 C -0.132 4.132 21 C -0.155 4.155 22 C 0.511 3.489 23 O -0.530 6.530 24 H 0.099 0.901 25 H 0.026 0.974 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 -3.648 -16.531 19.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.095 4.095 3 C -0.191 4.191 4 C -0.216 4.216 5 C -0.068 4.068 6 N -0.252 5.252 7 C 0.023 3.977 8 C -0.546 4.546 9 H 0.083 0.917 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.718 3.282 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.108 4.108 17 C -0.005 4.005 18 N -0.349 5.349 19 C -0.029 4.029 20 C -0.170 4.170 21 C -0.195 4.195 22 C 0.299 3.701 23 O -0.406 6.406 24 H 0.117 0.883 25 H 0.045 0.955 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.117 0.883 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.677 -4.208 -15.458 18.220 hybrid contribution -0.336 1.286 0.096 1.333 sum 8.341 -2.922 -15.362 17.723 Atomic orbital electron populations 1.22952 0.94197 1.02484 1.02390 1.21180 0.96668 0.95518 0.96147 1.21822 0.99793 0.96029 1.01499 1.22742 1.00518 1.00502 0.97804 1.22459 0.94640 0.93348 0.96330 1.62286 1.17324 1.18568 1.27053 1.20844 0.85432 0.95466 0.95978 1.21270 0.93344 1.19317 1.20637 0.91685 1.24948 0.95146 0.97168 0.97049 1.69958 0.98667 1.42759 1.42034 0.86619 0.78042 0.82029 0.81477 1.20807 1.21316 1.19857 1.22874 0.96160 0.97403 0.94345 1.21830 0.98583 0.93725 0.86391 1.48361 1.70735 1.09007 1.06829 1.22215 1.01016 0.98643 0.81055 1.22600 1.02135 0.93834 0.98468 1.22324 1.04751 0.98908 0.93559 1.20959 0.75778 0.82309 0.91102 1.90745 1.50889 1.63586 1.35391 0.88262 0.95525 0.90819 0.93566 0.93767 0.92120 0.91374 0.93744 0.92841 0.88649 0.93364 0.93946 0.95768 0.93004 0.92666 0.91944 0.89880 0.89295 0.91255 0.89857 0.89965 0.89374 0.88259 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 6.18 37.16 0.23 -2.84 16 2 C -0.09 -1.51 0.77 -154.51 -0.12 -1.62 16 3 C -0.13 -1.99 8.23 37.16 0.31 -1.69 16 4 C -0.16 -2.06 6.62 37.16 0.25 -1.82 16 5 C 0.06 1.12 4.54 -3.82 -0.02 1.10 16 6 N -0.53 -11.11 4.90 -236.07 -1.16 -12.26 16 7 C 0.15 3.67 4.23 -4.98 -0.02 3.65 16 8 C -0.51 -13.51 7.33 -34.44 -0.25 -13.76 16 9 H 0.07 1.71 5.53 -52.48 -0.29 1.42 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 12 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.02 0.38 4.33 -3.82 -0.02 0.37 16 17 C 0.12 1.78 4.83 -4.04 -0.02 1.76 16 18 N -0.61 -8.09 2.94 -172.36 -0.51 -8.60 16 19 C 0.09 0.85 6.93 -3.12 -0.02 0.82 16 20 C -0.13 -0.94 7.18 -25.10 -0.18 -1.12 16 21 C -0.16 -1.44 6.86 -26.74 -0.18 -1.62 16 22 C 0.51 7.47 8.03 -10.77 -0.09 7.38 16 23 O -0.53 -10.32 17.60 5.55 0.10 -10.23 16 24 H 0.10 2.25 5.51 -51.93 -0.29 1.96 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 1.45 3.28 -51.93 -0.17 1.28 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 30 H 0.07 0.88 2.35 -51.93 -0.12 0.76 16 31 H 0.04 0.52 7.92 -51.93 -0.41 0.11 16 32 H 0.05 0.64 5.72 -51.93 -0.30 0.35 16 33 H 0.10 1.98 4.97 -51.93 -0.26 1.72 16 34 H 0.05 0.80 6.35 -51.93 -0.33 0.47 16 35 H 0.04 1.07 3.27 -61.06 -0.20 0.87 16 36 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.06 0.95 2.70 -51.93 -0.14 0.81 16 39 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 40 H 0.08 1.46 7.93 -51.93 -0.41 1.05 16 41 H 0.09 1.22 3.65 -51.93 -0.19 1.03 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.74 5.66 -51.93 -0.29 0.45 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -31.20 333.76 -8.23 -39.44 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -7.18 Total: 3.54 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -0.23 Total: -7.88 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.93 Total: -46.09 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.10 Total: -10.23 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.20 -8.23 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109812356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.634 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds