Wall clock time and date at job start Tue Mar 31 2020 05:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47048 * 2 1 4 4 C 1.53006 * 109.47003 * 239.99902 * 2 1 3 5 5 C 1.52998 * 109.47465 * 120.00091 * 2 1 3 6 6 N 1.46906 * 109.46789 * 35.67509 * 5 2 1 7 7 C 1.46895 * 111.00047 * 288.36199 * 6 5 2 8 8 C 1.50693 * 109.47550 * 314.36960 * 7 6 5 9 9 H 1.08006 * 119.99734 * 4.71324 * 8 7 6 10 10 C 1.37874 * 120.00444 * 184.70662 * 8 7 6 11 11 N 1.31518 * 119.99994 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 120.00371 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46998 * 89.99954 * 12 10 8 14 14 H 1.48500 * 109.47267 * 210.00432 * 12 10 8 15 15 H 1.48505 * 109.46672 * 330.00216 * 12 10 8 16 16 C 1.46905 * 110.99772 * 52.32077 * 6 5 2 17 17 C 1.52998 * 109.47189 * 60.60984 * 16 6 5 18 18 N 1.46503 * 109.46921 * 179.97438 * 17 16 6 19 19 C 1.46767 * 124.34845 * 89.99523 * 18 17 16 20 20 C 1.54478 * 105.55161 * 197.07836 * 19 18 17 21 21 C 1.54634 * 101.76228 * 334.54456 * 20 19 18 22 22 C 1.34616 * 124.47069 * 270.02509 * 18 17 16 23 23 O 1.21284 * 124.90877 * 359.55531 * 22 18 17 24 24 H 1.08996 * 109.47127 * 298.31504 * 1 2 3 25 25 H 1.08999 * 109.47199 * 58.31608 * 1 2 3 26 26 H 1.08998 * 109.47326 * 178.31787 * 1 2 3 27 27 H 1.09004 * 109.46613 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47185 * 299.99723 * 3 2 1 29 29 H 1.08994 * 109.47256 * 60.00663 * 3 2 1 30 30 H 1.08994 * 109.46960 * 323.27231 * 4 2 1 31 31 H 1.09001 * 109.46595 * 83.27059 * 4 2 1 32 32 H 1.09000 * 109.47122 * 203.26754 * 4 2 1 33 33 H 1.08999 * 109.47053 * 275.67877 * 5 2 1 34 34 H 1.08997 * 109.47466 * 155.67393 * 5 2 1 35 35 H 1.08999 * 109.46993 * 74.37102 * 7 6 5 36 36 H 1.09005 * 109.46731 * 194.36676 * 7 6 5 37 37 H 0.96993 * 120.00063 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.46663 * 300.60637 * 16 6 5 39 39 H 1.09001 * 109.46807 * 180.60974 * 16 6 5 40 40 H 1.08998 * 109.46871 * 60.00187 * 17 16 6 41 41 H 1.08994 * 109.46890 * 299.99575 * 17 16 6 42 42 H 1.09002 * 110.24071 * 78.03721 * 19 18 17 43 43 H 1.08996 * 110.24527 * 316.12924 * 19 18 17 44 44 H 1.08999 * 110.96754 * 92.65712 * 20 19 18 45 45 H 1.08998 * 110.97068 * 216.42799 * 20 19 18 46 46 H 1.08998 * 110.48451 * 143.47541 * 21 20 19 47 47 H 1.09002 * 110.48283 * 266.11710 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2492 6 7 1.1425 -1.8391 1.5699 7 6 -0.1408 -1.3508 2.0919 8 6 0.1103 -0.2760 3.1177 9 1 1.1169 0.0690 3.3031 10 6 -0.9447 0.2673 3.8196 11 7 -2.1704 -0.1530 3.5942 12 14 -0.6334 1.6003 5.0908 13 1 -0.7048 2.9325 4.4386 14 1 -1.6621 1.5160 6.1585 15 1 0.7141 1.4118 5.6857 16 6 0.9402 -2.7042 0.3999 17 6 2.2848 -3.2830 -0.0450 18 7 2.0829 -4.1461 -1.2114 19 6 2.1357 -3.6832 -2.6032 20 6 1.4495 -4.7900 -3.4341 21 6 1.6630 -6.0335 -2.5400 22 6 1.8245 -5.4657 -1.1472 23 8 1.7341 -6.1061 -0.1212 24 1 -0.3633 0.4874 0.9047 25 1 -0.3633 0.5398 -0.8745 26 1 -0.3634 -1.0272 -0.0302 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.3845 -1.5620 -1.4764 31 1 2.0475 -0.0287 -2.0910 32 1 3.0512 -1.0868 -1.0705 33 1 2.0653 -0.0239 2.0865 34 1 3.0440 -1.1030 1.0639 35 1 -0.7334 -0.9411 1.2740 36 1 -0.6822 -2.1758 2.5550 37 1 -2.9126 0.2289 4.0882 38 1 0.5090 -2.1203 -0.4133 39 1 0.2634 -3.5174 0.6620 40 1 2.7159 -3.8668 0.7683 41 1 2.9615 -2.4698 -0.3071 42 1 3.1711 -3.5603 -2.9207 43 1 1.5952 -2.7425 -2.7085 44 1 0.3877 -4.5797 -3.5626 45 1 1.9407 -4.9145 -4.3991 46 1 0.7941 -6.6900 -2.5860 47 1 2.5635 -6.5692 -2.8405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109812356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:01 Heat of formation + Delta-G solvation = 5.465624 kcal Electronic energy + Delta-G solvation = -24443.793461 eV Core-core repulsion = 21242.196353 eV Total energy + Delta-G solvation = -3201.597108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73315 -40.68047 -37.43847 -35.45225 -34.93481 -33.59384 -30.59667 -29.34025 -28.61532 -27.74845 -27.59542 -26.49279 -24.10090 -22.67203 -21.78858 -20.39805 -19.71673 -18.57762 -17.91225 -17.41183 -16.93066 -16.67670 -16.20040 -15.88688 -15.55261 -15.01062 -14.90322 -14.75165 -14.32034 -14.19571 -14.09217 -13.77120 -13.46960 -13.28908 -13.19913 -12.88456 -12.70230 -12.56455 -12.52390 -12.26840 -12.16858 -12.09872 -11.92118 -11.82439 -11.71958 -11.59217 -11.25322 -11.07450 -10.78143 -10.75707 -10.53816 -9.65256 -8.52601 -8.16001 -6.21534 1.38883 1.41001 1.50901 1.57959 2.07589 2.41738 3.17445 3.47333 3.53355 3.68497 3.88961 4.02895 4.04131 4.09838 4.14447 4.21754 4.29546 4.52937 4.62522 4.67399 4.71842 4.74141 4.82063 4.86194 4.90073 4.91114 4.92089 5.01489 5.08257 5.12811 5.16206 5.25203 5.26907 5.30888 5.40659 5.48723 5.51898 5.62761 5.64958 5.71824 5.76603 6.10049 6.22653 6.45530 6.77447 6.95652 7.19204 7.45247 8.95809 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.004892 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.569903 B = 5722.422477 C = 6376.060334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.152 4.152 5 C 0.062 3.938 6 N -0.546 5.546 7 C 0.162 3.838 8 C -0.510 4.510 9 H 0.069 0.931 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.957 3.043 13 H -0.270 1.270 14 H -0.288 1.288 15 H -0.267 1.267 16 C 0.032 3.968 17 C 0.129 3.871 18 N -0.615 5.615 19 C 0.085 3.915 20 C -0.120 4.120 21 C -0.145 4.145 22 C 0.492 3.508 23 O -0.595 6.595 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.044 0.956 36 H -0.030 1.030 37 H 0.260 0.740 38 H 0.072 0.928 39 H 0.022 0.978 40 H 0.053 0.947 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.126 0.874 46 H 0.103 0.897 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.990 -2.397 -19.813 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.092 4.092 3 C -0.187 4.187 4 C -0.208 4.208 5 C -0.066 4.066 6 N -0.270 5.270 7 C 0.037 3.963 8 C -0.549 4.549 9 H 0.086 0.914 10 C -0.193 4.193 11 N -0.575 5.575 12 Si 0.782 3.218 13 H -0.196 1.196 14 H -0.214 1.214 15 H -0.192 1.192 16 C -0.097 4.097 17 C 0.006 3.994 18 N -0.348 5.348 19 C -0.036 4.036 20 C -0.157 4.157 21 C -0.185 4.185 22 C 0.282 3.718 23 O -0.476 6.476 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.061 0.939 36 H -0.012 1.012 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.145 0.855 46 H 0.121 0.879 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.014 -2.931 -18.796 21.982 hybrid contribution -1.053 0.874 1.090 1.749 sum 9.961 -2.057 -17.706 20.420 Atomic orbital electron populations 1.22708 0.96474 1.01053 1.00969 1.21118 0.94567 0.96864 0.96648 1.21778 1.01220 0.94586 1.01153 1.22638 1.01047 1.00603 0.96526 1.22467 0.95172 0.92161 0.96776 1.62095 1.15632 1.20032 1.29241 1.20559 0.87095 0.92993 0.95696 1.21563 0.93459 1.19227 1.20602 0.91361 1.25783 0.94866 0.99478 0.99157 1.70100 0.99590 1.44367 1.43395 0.85567 0.77882 0.79535 0.78776 1.19580 1.21443 1.19192 1.22806 0.97439 0.95787 0.93637 1.21539 0.96702 0.94147 0.86968 1.48516 1.69672 1.08539 1.08088 1.22601 1.03169 0.99450 0.78403 1.22668 1.02590 0.91314 0.99165 1.22360 1.06060 1.00033 0.90069 1.22067 0.74494 0.82708 0.92543 1.90702 1.53667 1.65099 1.38153 0.92759 0.93492 0.92468 0.91242 0.92002 0.94629 0.91639 0.91187 0.91076 0.91317 0.90743 0.93903 1.01183 0.93079 0.91040 0.95961 0.92874 0.86679 0.88452 0.89264 0.89877 0.85548 0.87859 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.81 6.18 71.98 0.44 -5.37 16 2 C -0.09 -2.74 0.77 -52.18 -0.04 -2.78 16 3 C -0.13 -3.51 8.23 71.98 0.59 -2.92 16 4 C -0.15 -3.28 6.62 71.98 0.48 -2.81 16 5 C 0.06 2.25 4.54 86.30 0.39 2.65 16 6 N -0.55 -23.89 4.90 -900.80 -4.41 -28.30 16 7 C 0.16 8.63 4.23 85.56 0.36 8.99 16 8 C -0.51 -28.35 7.33 25.60 0.19 -28.16 16 9 H 0.07 3.69 5.53 -2.91 -0.02 3.67 16 10 C 0.00 0.28 5.46 84.65 0.46 0.74 16 11 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 12 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 16 C 0.03 1.20 4.33 86.30 0.37 1.57 16 17 C 0.13 3.89 4.83 86.38 0.42 4.31 16 18 N -0.62 -15.32 2.94 -817.70 -2.40 -17.72 16 19 C 0.08 1.18 6.93 86.83 0.60 1.78 16 20 C -0.12 -1.18 7.18 31.65 0.23 -0.95 16 21 C -0.15 -2.32 6.86 30.59 0.21 -2.11 16 22 C 0.49 14.28 8.03 87.87 0.71 14.98 16 23 O -0.60 -24.42 17.60 -3.04 -0.05 -24.47 16 24 H 0.05 2.53 5.51 -2.39 -0.01 2.52 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 2.30 3.28 -2.39 -0.01 2.29 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.46 8.12 -2.39 -0.02 1.44 16 29 H 0.03 1.13 8.12 -2.39 -0.02 1.11 16 30 H 0.07 1.46 2.35 -2.39 -0.01 1.46 16 31 H 0.07 1.23 7.92 -2.39 -0.02 1.22 16 32 H 0.07 1.33 5.72 -2.39 -0.01 1.31 16 33 H 0.07 2.87 4.97 -2.39 -0.01 2.86 16 34 H 0.07 2.31 6.35 -2.39 -0.02 2.29 16 35 H 0.04 2.31 3.27 -10.96 -0.04 2.28 16 36 H -0.03 -1.88 8.14 -2.38 -0.02 -1.90 16 37 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.07 2.46 2.70 -2.39 -0.01 2.45 16 39 H 0.02 0.98 8.13 -2.39 -0.02 0.96 16 40 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 41 H 0.12 2.84 3.65 -2.39 -0.01 2.83 16 42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 1.18 5.66 -2.39 -0.01 1.17 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -75.31 333.76 1.81 -73.50 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.95 Total: 16.83 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 5.41 Total: -10.07 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -6.53 Total: -102.37 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -75.31 1.81 -73.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109812356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.970 kcal (2) G-P(sol) polarization free energy of solvation -75.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds