Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.53007 * 109.47153 * 239.99822 * 2 1 3 5 5 C 1.53000 * 109.46878 * 119.99959 * 2 1 3 6 6 N 1.46898 * 109.47070 * 75.39277 * 5 2 1 7 7 C 1.46896 * 111.00586 * 81.95418 * 6 5 2 8 8 C 1.50699 * 109.47080 * 74.16705 * 7 6 5 9 9 H 1.08006 * 120.00430 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00184 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00048 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00465 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46865 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47430 * 119.99465 * 12 10 8 15 15 H 1.48499 * 109.47070 * 240.00362 * 12 10 8 16 16 C 1.46901 * 111.00258 * 317.99870 * 6 5 2 17 17 C 1.50703 * 109.46971 * 300.63077 * 16 6 5 18 18 O 1.21284 * 119.99921 * 355.15884 * 17 16 6 19 19 N 1.34780 * 120.00197 * 175.16280 * 17 16 6 20 20 C 1.46502 * 119.99750 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.46524 * 180.02562 * 20 19 17 22 22 C 1.53002 * 117.49607 * 243.62326 * 21 20 19 23 23 C 1.52998 * 59.99953 * 252.50959 * 22 21 20 24 24 H 1.09003 * 109.47264 * 280.20247 * 1 2 3 25 25 H 1.09006 * 109.46911 * 40.20020 * 1 2 3 26 26 H 1.09005 * 109.47466 * 160.19789 * 1 2 3 27 27 H 1.09002 * 109.46783 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46808 * 299.99455 * 3 2 1 29 29 H 1.08991 * 109.47102 * 59.99797 * 3 2 1 30 30 H 1.09004 * 109.46753 * 306.37018 * 4 2 1 31 31 H 1.08994 * 109.46872 * 66.37251 * 4 2 1 32 32 H 1.09000 * 109.47139 * 186.37358 * 4 2 1 33 33 H 1.08994 * 109.47359 * 315.38871 * 5 2 1 34 34 H 1.09002 * 109.46869 * 195.38325 * 5 2 1 35 35 H 1.08999 * 109.47634 * 194.17035 * 7 6 5 36 36 H 1.09003 * 109.47256 * 314.17024 * 7 6 5 37 37 H 0.96996 * 120.00023 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.47798 * 180.63050 * 16 6 5 39 39 H 1.08998 * 109.47047 * 60.62423 * 16 6 5 40 40 H 0.97001 * 119.99534 * 0.02562 * 19 17 16 41 41 H 1.09000 * 109.47455 * 300.00031 * 20 19 17 42 42 H 1.08996 * 109.46893 * 60.00521 * 20 19 17 43 43 H 1.08996 * 115.55227 * 29.33237 * 21 20 19 44 44 H 1.08999 * 117.50341 * 0.02562 * 22 21 20 45 45 H 1.09002 * 117.49971 * 145.02457 * 22 21 20 46 46 H 1.09001 * 117.50373 * 252.50755 * 23 22 21 47 47 H 1.09003 * 117.49750 * 107.49119 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2493 6 7 1.8738 -2.1709 1.0798 7 6 2.9776 -2.7392 0.2945 8 6 4.2209 -2.7967 1.1441 9 1 4.1938 -2.4466 2.1655 10 6 5.3932 -3.2964 0.6176 11 7 5.4264 -3.7223 -0.6263 12 14 6.9342 -3.3684 1.6709 13 1 6.6351 -2.8322 3.0230 14 1 7.3897 -4.7771 1.7862 15 1 8.0030 -2.5525 1.0407 16 6 0.5760 -2.4841 0.4669 17 6 -0.5326 -1.9569 1.3410 18 8 -0.2723 -1.4556 2.4144 19 7 -1.8134 -2.0424 0.9302 20 6 -2.8911 -1.5303 1.7803 21 6 -4.2365 -1.7494 1.0854 22 6 -5.0431 -0.5077 0.7002 23 6 -5.5018 -1.3868 1.8653 24 1 -0.3634 0.1820 1.0114 25 1 -0.3633 0.7850 -0.6634 26 1 -0.3634 -0.9669 -0.3482 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.5865 -1.7108 -1.3080 31 1 1.7728 -0.1459 -2.1355 32 1 3.1240 -0.8212 -1.1941 33 1 1.4713 -0.3895 2.1179 34 1 3.0952 -0.4913 1.3962 35 1 2.7123 -3.7454 -0.0300 36 1 3.1626 -2.1129 -0.5783 37 1 6.2510 -4.0741 -0.9966 38 1 0.4743 -3.5643 0.3631 39 1 0.5165 -2.0174 -0.5163 40 1 -2.0216 -2.4436 0.0719 41 1 -2.8845 -2.0590 2.7334 42 1 -2.7411 -0.4649 1.9547 43 1 -4.2861 -2.6093 0.4175 44 1 -4.6152 0.4654 0.9414 45 1 -5.6236 -0.5504 -0.2214 46 1 -6.3840 -2.0080 1.7103 47 1 -5.3758 -0.9922 2.8736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109813630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = 45.469835 kcal Electronic energy + Delta-G solvation = -23973.000305 eV Core-core repulsion = 20773.137910 eV Total energy + Delta-G solvation = -3199.862395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70939 -38.31291 -37.22634 -34.04977 -33.76697 -32.25918 -29.56065 -27.59646 -26.87588 -26.45389 -25.86251 -23.61787 -22.67452 -21.13714 -20.77897 -19.79167 -18.55968 -16.91106 -16.48356 -16.18138 -15.74979 -15.13814 -14.68774 -14.53559 -14.22305 -14.15093 -13.92893 -13.41245 -13.23179 -12.80867 -12.56215 -12.19355 -11.93681 -11.82726 -11.62720 -11.33446 -11.22461 -11.18425 -11.03941 -10.87081 -10.76190 -10.67024 -10.47183 -10.40023 -10.30726 -9.98074 -9.81255 -9.73049 -9.27151 -8.93905 -8.77282 -8.33948 -6.88044 -5.95743 -3.94388 3.08818 3.23282 3.35488 3.43078 3.49752 3.58455 4.41003 4.49667 4.62389 4.69927 4.97659 5.06566 5.21645 5.28597 5.30161 5.32743 5.34339 5.39822 5.53162 5.60101 5.67425 5.81718 5.84239 5.90741 5.93377 5.95643 5.98623 6.05165 6.11533 6.19124 6.31601 6.45614 6.49047 6.60210 6.65161 6.78537 6.92459 7.09361 7.29642 7.50764 7.68724 7.92387 8.18047 8.31572 8.60464 8.69038 9.13873 9.68313 11.14315 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026017 B = 0.004111 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.956855 B = 6809.689901 C = 7253.322044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.101 4.101 3 C -0.132 4.132 4 C -0.158 4.158 5 C 0.066 3.934 6 N -0.511 5.511 7 C 0.159 3.841 8 C -0.496 4.496 9 H 0.062 0.938 10 C 0.053 3.947 11 N -0.902 5.902 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.286 1.286 16 C 0.004 3.996 17 C 0.530 3.470 18 O -0.525 6.525 19 N -0.745 5.745 20 C 0.154 3.846 21 C -0.167 4.167 22 C -0.178 4.178 23 C -0.173 4.173 24 H 0.066 0.934 25 H 0.042 0.958 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.022 0.978 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.397 0.603 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.772 6.192 -1.684 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.103 4.103 3 C -0.190 4.190 4 C -0.214 4.214 5 C -0.062 4.062 6 N -0.234 5.234 7 C 0.035 3.965 8 C -0.535 4.535 9 H 0.080 0.920 10 C -0.147 4.147 11 N -0.543 5.543 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.213 1.213 16 C -0.126 4.126 17 C 0.318 3.682 18 O -0.400 6.400 19 N -0.400 5.400 20 C 0.030 3.970 21 C -0.185 4.185 22 C -0.215 4.215 23 C -0.211 4.211 24 H 0.085 0.915 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.128 0.872 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.114 0.886 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.413 6.248 -0.521 19.451 hybrid contribution 0.684 -0.015 -0.807 1.058 sum -17.729 6.233 -1.327 18.840 Atomic orbital electron populations 1.23055 0.96003 1.01853 1.02215 1.21241 0.94937 0.96221 0.97906 1.21775 1.01183 0.95479 1.00565 1.22634 1.03166 0.99770 0.95849 1.22389 1.01731 0.86980 0.95105 1.62100 0.99718 1.11477 1.50150 1.20520 0.87363 0.94952 0.93646 1.21234 0.93419 1.40019 0.98834 0.91952 1.24943 0.98866 0.95839 0.95065 1.69958 1.27274 1.43343 1.13694 0.86495 0.83028 0.77537 0.80710 1.19674 1.21175 1.21257 1.23001 0.91211 1.01664 0.96750 1.20668 0.82993 0.77534 0.87001 1.90649 1.82840 1.43565 1.22972 1.46150 1.06197 1.64740 1.22961 1.20749 0.83502 0.99288 0.93413 1.22478 0.92156 1.00000 1.03880 1.23076 1.03678 0.95308 0.99390 1.22946 0.97417 1.03621 0.97083 0.91476 0.93898 0.90756 0.92479 0.93615 0.93166 0.91386 0.94313 0.89938 0.90361 0.90485 0.96004 0.94764 0.93184 0.89508 0.89711 0.76947 0.91467 0.91724 0.87248 0.88551 0.88761 0.88588 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 6.60 37.16 0.25 -2.34 16 2 C -0.10 -1.71 0.77 -154.51 -0.12 -1.83 16 3 C -0.13 -2.02 8.32 37.16 0.31 -1.71 16 4 C -0.16 -2.77 6.55 37.16 0.24 -2.52 16 5 C 0.07 1.36 4.47 -3.83 -0.02 1.34 16 6 N -0.51 -11.17 4.47 -237.52 -1.06 -12.23 16 7 C 0.16 4.00 4.01 -4.98 -0.02 3.98 16 8 C -0.50 -13.99 8.42 -34.44 -0.29 -14.28 16 9 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 10 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 11 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 12 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 C 0.00 0.08 4.49 -4.97 -0.02 0.06 16 17 C 0.53 8.62 4.17 -10.98 -0.05 8.57 16 18 O -0.53 -10.51 13.10 5.55 0.07 -10.44 16 19 N -0.75 -8.81 4.72 -60.29 -0.28 -9.10 16 20 C 0.15 1.66 5.96 -4.04 -0.02 1.64 16 21 C -0.17 -1.33 5.85 -90.62 -0.53 -1.86 16 22 C -0.18 -1.28 10.18 -26.73 -0.27 -1.56 16 23 C -0.17 -1.22 10.25 -26.73 -0.27 -1.50 16 24 H 0.07 1.09 5.66 -51.93 -0.29 0.80 16 25 H 0.04 0.57 7.98 -51.93 -0.41 0.16 16 26 H 0.07 1.03 3.15 -51.93 -0.16 0.86 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.21 3.99 -51.93 -0.21 1.00 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.70 6.28 -51.93 -0.33 1.38 16 33 H 0.08 1.67 5.82 -51.93 -0.30 1.37 16 34 H 0.08 1.74 7.11 -51.93 -0.37 1.37 16 35 H 0.02 0.59 7.87 -51.93 -0.41 0.18 16 36 H 0.04 0.87 3.43 -51.93 -0.18 0.69 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.09 1.47 8.00 -51.93 -0.42 1.06 16 39 H 0.09 1.35 2.52 -51.93 -0.13 1.22 16 40 H 0.40 3.65 8.37 -40.82 -0.34 3.31 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.76 7.88 -51.93 -0.41 0.35 16 43 H 0.11 0.78 8.04 -51.93 -0.42 0.36 16 44 H 0.10 0.72 8.03 -51.93 -0.42 0.31 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -31.48 347.29 -8.96 -40.43 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.72 Total: 5.41 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.91 Total: -10.60 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.61 Total: -46.99 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.44 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.48 -8.96 -40.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109813630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.903 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds