Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47215 * 2 1 4 4 C 1.53007 * 109.47153 * 239.99822 * 2 1 3 5 5 C 1.53000 * 109.46878 * 119.99959 * 2 1 3 6 6 N 1.46898 * 109.47070 * 75.39277 * 5 2 1 7 7 C 1.46896 * 111.00586 * 81.95418 * 6 5 2 8 8 C 1.50699 * 109.47080 * 74.16705 * 7 6 5 9 9 H 1.08006 * 120.00430 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00184 * 180.02562 * 8 7 6 11 11 N 1.31519 * 120.00048 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00465 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46865 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47430 * 119.99465 * 12 10 8 15 15 H 1.48499 * 109.47070 * 240.00362 * 12 10 8 16 16 C 1.46901 * 111.00258 * 317.99870 * 6 5 2 17 17 C 1.50703 * 109.46971 * 300.63077 * 16 6 5 18 18 O 1.21284 * 119.99921 * 355.15884 * 17 16 6 19 19 N 1.34780 * 120.00197 * 175.16280 * 17 16 6 20 20 C 1.46502 * 119.99750 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.46524 * 180.02562 * 20 19 17 22 22 C 1.53002 * 117.49607 * 243.62326 * 21 20 19 23 23 C 1.52998 * 59.99953 * 252.50959 * 22 21 20 24 24 H 1.09003 * 109.47264 * 280.20247 * 1 2 3 25 25 H 1.09006 * 109.46911 * 40.20020 * 1 2 3 26 26 H 1.09005 * 109.47466 * 160.19789 * 1 2 3 27 27 H 1.09002 * 109.46783 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46808 * 299.99455 * 3 2 1 29 29 H 1.08991 * 109.47102 * 59.99797 * 3 2 1 30 30 H 1.09004 * 109.46753 * 306.37018 * 4 2 1 31 31 H 1.08994 * 109.46872 * 66.37251 * 4 2 1 32 32 H 1.09000 * 109.47139 * 186.37358 * 4 2 1 33 33 H 1.08994 * 109.47359 * 315.38871 * 5 2 1 34 34 H 1.09002 * 109.46869 * 195.38325 * 5 2 1 35 35 H 1.08999 * 109.47634 * 194.17035 * 7 6 5 36 36 H 1.09003 * 109.47256 * 314.17024 * 7 6 5 37 37 H 0.96996 * 120.00023 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.47798 * 180.63050 * 16 6 5 39 39 H 1.08998 * 109.47047 * 60.62423 * 16 6 5 40 40 H 0.97001 * 119.99534 * 0.02562 * 19 17 16 41 41 H 1.09000 * 109.47455 * 300.00031 * 20 19 17 42 42 H 1.08996 * 109.46893 * 60.00521 * 20 19 17 43 43 H 1.08996 * 115.55227 * 29.33237 * 21 20 19 44 44 H 1.08999 * 117.50341 * 0.02562 * 22 21 20 45 45 H 1.09002 * 117.49971 * 145.02457 * 22 21 20 46 46 H 1.09001 * 117.50373 * 252.50755 * 23 22 21 47 47 H 1.09003 * 117.49750 * 107.49119 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0399 -0.7213 1.2493 6 7 1.8738 -2.1709 1.0798 7 6 2.9776 -2.7392 0.2945 8 6 4.2209 -2.7967 1.1441 9 1 4.1938 -2.4466 2.1655 10 6 5.3932 -3.2964 0.6176 11 7 5.4264 -3.7223 -0.6263 12 14 6.9342 -3.3684 1.6709 13 1 6.6351 -2.8322 3.0230 14 1 7.3897 -4.7771 1.7862 15 1 8.0030 -2.5525 1.0407 16 6 0.5760 -2.4841 0.4669 17 6 -0.5326 -1.9569 1.3410 18 8 -0.2723 -1.4556 2.4144 19 7 -1.8134 -2.0424 0.9302 20 6 -2.8911 -1.5303 1.7803 21 6 -4.2365 -1.7494 1.0854 22 6 -5.0431 -0.5077 0.7002 23 6 -5.5018 -1.3868 1.8653 24 1 -0.3634 0.1820 1.0114 25 1 -0.3633 0.7850 -0.6634 26 1 -0.3634 -0.9669 -0.3482 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.5865 -1.7108 -1.3080 31 1 1.7728 -0.1459 -2.1355 32 1 3.1240 -0.8212 -1.1941 33 1 1.4713 -0.3895 2.1179 34 1 3.0952 -0.4913 1.3962 35 1 2.7123 -3.7454 -0.0300 36 1 3.1626 -2.1129 -0.5783 37 1 6.2510 -4.0741 -0.9966 38 1 0.4743 -3.5643 0.3631 39 1 0.5165 -2.0174 -0.5163 40 1 -2.0216 -2.4436 0.0719 41 1 -2.8845 -2.0590 2.7334 42 1 -2.7411 -0.4649 1.9547 43 1 -4.2861 -2.6093 0.4175 44 1 -4.6152 0.4654 0.9414 45 1 -5.6236 -0.5504 -0.2214 46 1 -6.3840 -2.0080 1.7103 47 1 -5.3758 -0.9922 2.8736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109813630.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = 24.507009 kcal Electronic energy + Delta-G solvation = -23973.909322 eV Core-core repulsion = 20773.137910 eV Total energy + Delta-G solvation = -3200.771411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11490 -39.45668 -38.18767 -35.60353 -35.08112 -34.21673 -31.00405 -29.25244 -28.26961 -27.85795 -27.13798 -25.40264 -23.21448 -22.48615 -21.94221 -21.05868 -19.95459 -18.58931 -17.85014 -17.43260 -17.18142 -16.57494 -16.33692 -15.69740 -15.65395 -15.44532 -15.08092 -14.67587 -14.52855 -14.20650 -14.10748 -13.89713 -13.27691 -12.94305 -12.83212 -12.68264 -12.60684 -12.52826 -12.40788 -12.35169 -12.31430 -12.12250 -11.99478 -11.77168 -11.41397 -11.36942 -11.26603 -11.19956 -11.04954 -10.51796 -10.42702 -9.89523 -8.58991 -8.12395 -6.19793 1.39030 1.40570 1.53659 1.77803 2.16592 2.44264 2.92769 3.17334 3.48248 3.75706 3.89284 3.91002 3.94594 3.97522 4.05067 4.16012 4.32625 4.46194 4.48930 4.61267 4.62504 4.70968 4.72792 4.80004 4.81343 4.83434 4.84810 4.94835 5.02234 5.06658 5.15214 5.23173 5.25324 5.29503 5.29627 5.34711 5.44927 5.50111 5.58029 5.63097 5.73408 6.17096 6.48806 6.56570 6.80618 6.94851 7.42121 7.47232 8.95169 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026017 B = 0.004111 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.956855 B = 6809.689901 C = 7253.322044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.098 4.098 3 C -0.129 4.129 4 C -0.150 4.150 5 C 0.074 3.926 6 N -0.533 5.533 7 C 0.174 3.826 8 C -0.516 4.516 9 H 0.044 0.956 10 C 0.007 3.993 11 N -0.928 5.928 12 Si 0.956 3.044 13 H -0.274 1.274 14 H -0.278 1.278 15 H -0.277 1.277 16 C 0.002 3.998 17 C 0.536 3.464 18 O -0.567 6.567 19 N -0.723 5.723 20 C 0.156 3.844 21 C -0.170 4.170 22 C -0.173 4.173 23 C -0.171 4.171 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.044 0.956 35 H -0.002 1.002 36 H 0.036 0.964 37 H 0.263 0.737 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.413 0.587 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.588 6.813 -2.753 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.100 4.100 3 C -0.187 4.187 4 C -0.206 4.206 5 C -0.054 4.054 6 N -0.256 5.256 7 C 0.049 3.951 8 C -0.555 4.555 9 H 0.063 0.937 10 C -0.190 4.190 11 N -0.569 5.569 12 Si 0.782 3.218 13 H -0.198 1.198 14 H -0.204 1.204 15 H -0.202 1.202 16 C -0.128 4.128 17 C 0.324 3.676 18 O -0.445 6.445 19 N -0.378 5.378 20 C 0.033 3.967 21 C -0.189 4.189 22 C -0.210 4.210 23 C -0.208 4.208 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.016 0.984 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.250 0.750 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.110 0.890 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.276 6.864 -1.618 21.467 hybrid contribution 1.184 -0.211 -0.457 1.287 sum -19.092 6.653 -2.075 20.324 Atomic orbital electron populations 1.22908 0.93833 1.03236 1.02068 1.21171 0.96580 0.96676 0.95544 1.21749 1.00392 0.94496 1.02061 1.22475 1.00579 1.00200 0.97347 1.22214 0.99614 0.86767 0.96825 1.61899 1.00745 1.12410 1.50557 1.20231 0.87614 0.93798 0.93503 1.21487 0.95290 1.40251 0.98462 0.93729 1.25679 1.01693 0.95396 0.96264 1.70040 1.28207 1.43782 1.14899 0.85527 0.79488 0.77816 0.78946 1.19849 1.20394 1.20237 1.23093 0.89690 1.02267 0.97798 1.20347 0.84014 0.77140 0.86120 1.90642 1.83651 1.45638 1.24592 1.45916 1.04916 1.63412 1.23563 1.20776 0.84459 0.98426 0.93063 1.22386 0.90734 1.01178 1.04558 1.23138 1.03189 0.94672 1.00013 1.23040 0.97227 1.03550 0.97001 0.92793 0.91403 0.89928 0.93822 0.91096 0.92633 0.91807 0.91376 0.93630 0.91378 0.93760 0.98375 0.94641 0.92843 0.89174 0.87589 0.74991 0.92876 0.92554 0.85852 0.88994 0.87361 0.87178 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.49 6.60 71.98 0.47 -4.01 16 2 C -0.10 -3.23 0.77 -52.18 -0.04 -3.27 16 3 C -0.13 -3.78 8.32 71.98 0.60 -3.18 16 4 C -0.15 -5.12 6.55 71.98 0.47 -4.65 16 5 C 0.07 3.13 4.47 86.30 0.39 3.51 16 6 N -0.53 -23.99 4.47 -905.39 -4.04 -28.03 16 7 C 0.17 9.04 4.01 85.56 0.34 9.39 16 8 C -0.52 -30.18 8.42 25.60 0.22 -29.96 16 9 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 10 C 0.01 0.43 5.46 84.65 0.46 0.89 16 11 N -0.93 -55.09 13.29 21.45 0.28 -54.81 16 12 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 13 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 C 0.00 0.06 4.49 85.56 0.38 0.44 16 17 C 0.54 17.11 4.17 87.66 0.37 17.47 16 18 O -0.57 -22.93 13.10 -3.04 -0.04 -22.97 16 19 N -0.72 -15.85 4.72 -463.05 -2.18 -18.04 16 20 C 0.16 3.15 5.96 86.38 0.51 3.66 16 21 C -0.17 -2.29 5.85 -10.79 -0.06 -2.35 16 22 C -0.17 -2.03 10.18 30.59 0.31 -1.72 16 23 C -0.17 -2.00 10.25 30.59 0.31 -1.69 16 24 H 0.05 1.67 5.66 -2.39 -0.01 1.66 16 25 H 0.07 1.55 7.98 -2.38 -0.02 1.53 16 26 H 0.08 2.08 3.15 -2.38 -0.01 2.07 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 2.21 3.99 -2.38 -0.01 2.20 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.91 6.28 -2.39 -0.01 1.90 16 33 H 0.07 3.02 5.82 -2.39 -0.01 3.00 16 34 H 0.04 2.11 7.11 -2.39 -0.02 2.09 16 35 H 0.00 -0.10 7.87 -2.39 -0.02 -0.12 16 36 H 0.04 1.87 3.43 -2.39 -0.01 1.86 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.09 3.04 8.00 -2.39 -0.02 3.03 16 39 H 0.11 3.24 2.52 -2.39 -0.01 3.23 16 40 H 0.41 6.46 8.37 -92.71 -0.78 5.68 16 41 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 1.26 7.88 -2.39 -0.02 1.24 16 43 H 0.12 1.35 8.04 -2.39 -0.02 1.33 16 44 H 0.09 1.17 8.03 -2.39 -0.02 1.16 16 45 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 47 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.86 347.29 0.97 -68.89 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.19 Total: 22.61 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 4.74 Total: -15.47 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -5.94 Total: -100.88 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.04 Total: -22.97 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -69.86 0.97 -68.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109813630.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.395 kcal (2) G-P(sol) polarization free energy of solvation -69.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds