Wall clock time and date at job start Tue Mar 31 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 C 1.53001 * 109.47302 * 240.00053 * 2 1 3 5 5 C 1.50702 * 109.47592 * 120.00146 * 2 1 3 6 6 O 1.21282 * 119.99684 * 359.97438 * 5 2 1 7 7 N 1.34769 * 120.00461 * 179.97438 * 5 2 1 8 8 C 1.46500 * 120.00237 * 180.02562 * 7 5 2 9 9 C 1.53006 * 109.46998 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.50180 * 55.00059 * 9 8 7 11 11 C 1.53113 * 109.50267 * 294.91982 * 9 8 7 12 12 C 1.53122 * 109.15909 * 182.44462 * 11 9 8 13 13 C 1.53041 * 109.30926 * 57.59599 * 12 11 9 14 14 N 1.46844 * 109.52252 * 300.84052 * 13 12 11 15 15 C 1.46903 * 110.99968 * 185.83635 * 14 13 12 16 16 C 1.50698 * 109.46925 * 65.79386 * 15 14 13 17 17 H 1.07996 * 120.00043 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00002 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99977 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00022 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47399 * 60.00003 * 20 18 16 22 22 H 1.48498 * 109.47170 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47246 * 300.00048 * 20 18 16 24 24 C 1.46849 * 111.19897 * 61.74489 * 14 13 12 25 25 H 1.09000 * 109.46870 * 299.99783 * 1 2 3 26 26 H 1.09001 * 109.47372 * 59.99633 * 1 2 3 27 27 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47398 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47194 * 300.00476 * 3 2 1 30 30 H 1.09000 * 109.46968 * 60.00277 * 3 2 1 31 31 H 1.09000 * 109.47437 * 300.00386 * 4 2 1 32 32 H 1.09001 * 109.47109 * 59.99598 * 4 2 1 33 33 H 1.08992 * 109.47514 * 179.97438 * 4 2 1 34 34 H 0.97010 * 119.99854 * 0.02562 * 7 5 2 35 35 H 1.08993 * 109.47452 * 60.00368 * 8 7 5 36 36 H 1.09000 * 109.47175 * 300.00158 * 8 7 5 37 37 H 1.08997 * 109.52375 * 302.31419 * 11 9 8 38 38 H 1.09001 * 109.52438 * 62.50285 * 11 9 8 39 39 H 1.08996 * 109.47043 * 297.65928 * 12 11 9 40 40 H 1.08997 * 109.54108 * 177.57526 * 12 11 9 41 41 H 1.08999 * 109.46102 * 180.82440 * 13 12 11 42 42 H 1.08999 * 109.46115 * 60.85622 * 13 12 11 43 43 H 1.09007 * 109.46998 * 185.79240 * 15 14 13 44 44 H 1.08997 * 109.47222 * 305.78938 * 15 14 13 45 45 H 0.96998 * 119.99870 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.46594 * 178.24259 * 24 14 13 47 47 H 1.09005 * 109.45358 * 58.26281 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 8 1.2443 -1.1710 2.0290 7 7 3.3574 -0.8340 1.4434 8 6 3.8458 -1.5251 2.6393 9 6 5.3759 -1.5250 2.6393 10 1 5.7396 -0.5014 2.5502 11 6 5.8871 -2.3539 1.4578 12 6 7.4171 -2.3992 1.5003 13 6 7.8689 -2.9859 2.8397 14 7 7.3552 -2.1563 3.9371 15 6 7.8831 -2.6092 5.2310 16 6 9.3728 -2.3849 5.2719 17 1 9.8768 -1.9492 4.4219 18 6 10.0922 -2.7360 6.3944 19 7 9.4784 -3.2662 7.4297 20 14 11.9388 -2.4587 6.4449 21 1 12.2271 -1.0122 6.2720 22 1 12.4725 -2.9164 7.7529 23 1 12.5848 -3.2265 5.3501 24 6 5.8868 -2.1370 3.9456 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7209 -1.2495 34 1 3.9878 -0.4653 0.8049 35 1 3.4823 -2.5527 2.6391 36 1 3.4828 -1.0115 3.5295 37 1 5.4912 -3.3671 1.5252 38 1 5.5616 -1.8961 0.5236 39 1 7.8136 -1.3896 1.3930 40 1 7.7861 -3.0235 0.6866 41 1 8.9580 -3.0057 2.8785 42 1 7.4835 -4.0005 2.9402 43 1 7.4086 -2.0456 6.0344 44 1 7.6719 -3.6709 5.3581 45 1 9.9845 -3.5129 8.2196 46 1 5.5363 -1.5403 4.7877 47 1 5.5109 -3.1557 4.0409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112700879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:10 Heat of formation + Delta-G solvation = -66.363656 kcal Electronic energy + Delta-G solvation = -22823.152164 eV Core-core repulsion = 19618.440305 eV Total energy + Delta-G solvation = -3204.711859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32654 -38.58401 -35.89204 -35.27197 -33.29643 -31.81168 -30.97250 -27.69556 -27.52784 -27.05969 -25.88743 -23.85098 -22.61338 -22.02532 -20.63586 -19.65558 -19.05501 -16.95718 -16.33467 -16.08137 -15.56688 -15.22574 -14.60806 -14.41238 -14.17784 -14.16810 -14.04422 -13.48951 -13.47698 -13.18077 -12.68560 -12.58503 -12.42592 -12.23973 -12.14685 -12.02880 -11.87756 -11.65386 -11.26603 -11.24100 -11.21955 -10.83877 -10.76862 -10.65580 -10.37981 -10.15805 -10.05887 -9.80158 -9.61299 -9.17512 -9.08264 -8.43913 -7.24294 -6.03134 -4.04754 2.57012 3.09046 3.32620 3.36935 3.39521 4.35332 4.41162 4.45355 4.55980 4.70247 4.92248 4.96064 5.05488 5.20420 5.20991 5.27866 5.32354 5.37488 5.49070 5.50243 5.55997 5.59886 5.63165 5.71964 5.74165 5.82936 5.87731 5.88314 5.98517 6.00924 6.14685 6.20609 6.22788 6.35981 6.37438 6.50588 6.71914 6.74012 7.29989 7.34584 7.42767 7.79251 8.09202 8.15324 8.20536 8.54705 9.02626 9.59402 11.07753 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037063 B = 0.002955 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.282474 B = 9473.044880 C = 9751.889050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.140 4.140 5 C 0.519 3.481 6 O -0.542 6.542 7 N -0.724 5.724 8 C 0.123 3.877 9 C -0.095 4.095 10 H 0.083 0.917 11 C -0.111 4.111 12 C -0.117 4.117 13 C 0.063 3.937 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.508 4.508 17 H 0.063 0.937 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.065 3.935 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.018 0.982 43 H 0.030 0.970 44 H -0.010 1.010 45 H 0.262 0.738 46 H 0.070 0.930 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.589 6.342 -18.009 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.305 3.695 6 O -0.419 6.419 7 N -0.375 5.375 8 C 0.000 4.000 9 C -0.114 4.114 10 H 0.101 0.899 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.065 4.065 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.547 4.547 17 H 0.081 0.919 18 C -0.146 4.146 19 N -0.538 5.538 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.065 4.065 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.036 0.964 43 H 0.048 0.952 44 H 0.008 0.992 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.945 6.399 -17.286 23.113 hybrid contribution 1.076 -0.604 0.077 1.236 sum -12.869 5.795 -17.210 22.257 Atomic orbital electron populations 1.21652 0.92016 1.02820 1.01968 1.20826 0.98059 0.96465 0.93753 1.21872 1.01311 0.93752 1.02904 1.21866 1.01267 1.00646 0.96013 1.20559 0.82239 0.79486 0.87228 1.90697 1.55409 1.48668 1.47098 1.46054 1.06967 1.58689 1.25821 1.21428 0.94042 0.97269 0.87298 1.21435 0.92186 1.01180 0.96593 0.89866 1.21611 0.96662 0.99704 0.96897 1.21626 0.94673 1.01675 0.97524 1.21949 1.01251 0.93356 0.89973 1.62009 1.04381 1.53479 1.06131 1.19702 0.95445 0.93671 0.84298 1.21117 0.92075 1.40524 1.00955 0.91912 1.24996 0.98731 0.95336 0.95572 1.69951 1.35998 1.42742 1.05127 0.86559 0.85130 0.78632 0.77070 1.20163 1.21365 1.20295 1.21904 0.90582 0.98382 0.95611 0.91926 0.92122 0.91969 0.92036 0.91377 0.91960 0.92025 0.91376 0.92076 0.76598 0.91584 0.91325 0.92395 0.92805 0.91461 0.92389 0.89856 0.96372 0.95184 0.99178 0.92851 0.91186 0.95799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 7.76 37.16 0.29 -0.79 16 2 C -0.09 -0.74 0.87 -155.66 -0.14 -0.87 16 3 C -0.14 -0.95 8.37 37.16 0.31 -0.64 16 4 C -0.14 -0.93 8.37 37.16 0.31 -0.62 16 5 C 0.52 6.19 6.48 -10.99 -0.07 6.12 16 6 O -0.54 -8.74 15.98 5.56 0.09 -8.65 16 7 N -0.72 -7.70 5.09 -60.29 -0.31 -8.01 16 8 C 0.12 1.56 5.07 -4.04 -0.02 1.54 16 9 C -0.09 -1.27 2.39 -90.54 -0.22 -1.49 16 10 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 11 C -0.11 -1.38 5.13 -26.61 -0.14 -1.52 16 12 C -0.12 -1.68 6.09 -26.65 -0.16 -1.84 16 13 C 0.06 1.19 5.30 -3.83 -0.02 1.17 16 14 N -0.54 -11.28 4.65 -236.10 -1.10 -12.38 16 15 C 0.19 5.04 4.72 -4.98 -0.02 5.01 16 16 C -0.51 -14.17 8.43 -34.44 -0.29 -14.46 16 17 H 0.06 1.72 7.12 -52.49 -0.37 1.35 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 20 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.06 1.13 4.74 -3.83 -0.02 1.11 16 25 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.06 0.37 7.57 -51.93 -0.39 -0.02 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 34 H 0.40 3.34 6.51 -40.82 -0.27 3.07 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.54 7.26 -51.93 -0.38 0.16 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.73 6.70 -51.93 -0.35 1.38 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.03 0.84 7.99 -51.92 -0.41 0.42 16 44 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -31.70 366.24 -9.24 -40.94 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.87 Total: -2.10 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -0.28 Total: -5.83 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: -0.67 Total: -46.41 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.70 -9.24 -40.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112700879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.424 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds