Wall clock time and date at job start Tue Mar 31 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47328 * 2 1 4 4 C 1.53001 * 109.47302 * 240.00053 * 2 1 3 5 5 C 1.50702 * 109.47592 * 120.00146 * 2 1 3 6 6 O 1.21282 * 119.99684 * 359.97438 * 5 2 1 7 7 N 1.34769 * 120.00461 * 179.97438 * 5 2 1 8 8 C 1.46500 * 120.00237 * 180.02562 * 7 5 2 9 9 C 1.53006 * 109.46998 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.50180 * 55.00059 * 9 8 7 11 11 C 1.53113 * 109.50267 * 294.91982 * 9 8 7 12 12 C 1.53122 * 109.15909 * 182.44462 * 11 9 8 13 13 C 1.53041 * 109.30926 * 57.59599 * 12 11 9 14 14 N 1.46844 * 109.52252 * 300.84052 * 13 12 11 15 15 C 1.46903 * 110.99968 * 185.83635 * 14 13 12 16 16 C 1.50698 * 109.46925 * 65.79386 * 15 14 13 17 17 H 1.07996 * 120.00043 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00002 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99977 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00022 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47399 * 60.00003 * 20 18 16 22 22 H 1.48498 * 109.47170 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47246 * 300.00048 * 20 18 16 24 24 C 1.46849 * 111.19897 * 61.74489 * 14 13 12 25 25 H 1.09000 * 109.46870 * 299.99783 * 1 2 3 26 26 H 1.09001 * 109.47372 * 59.99633 * 1 2 3 27 27 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47398 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47194 * 300.00476 * 3 2 1 30 30 H 1.09000 * 109.46968 * 60.00277 * 3 2 1 31 31 H 1.09000 * 109.47437 * 300.00386 * 4 2 1 32 32 H 1.09001 * 109.47109 * 59.99598 * 4 2 1 33 33 H 1.08992 * 109.47514 * 179.97438 * 4 2 1 34 34 H 0.97010 * 119.99854 * 0.02562 * 7 5 2 35 35 H 1.08993 * 109.47452 * 60.00368 * 8 7 5 36 36 H 1.09000 * 109.47175 * 300.00158 * 8 7 5 37 37 H 1.08997 * 109.52375 * 302.31419 * 11 9 8 38 38 H 1.09001 * 109.52438 * 62.50285 * 11 9 8 39 39 H 1.08996 * 109.47043 * 297.65928 * 12 11 9 40 40 H 1.08997 * 109.54108 * 177.57526 * 12 11 9 41 41 H 1.08999 * 109.46102 * 180.82440 * 13 12 11 42 42 H 1.08999 * 109.46115 * 60.85622 * 13 12 11 43 43 H 1.09007 * 109.46998 * 185.79240 * 15 14 13 44 44 H 1.08997 * 109.47222 * 305.78938 * 15 14 13 45 45 H 0.96998 * 119.99870 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.46594 * 178.24259 * 24 14 13 47 47 H 1.09005 * 109.45358 * 58.26281 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2304 6 8 1.2443 -1.1710 2.0290 7 7 3.3574 -0.8340 1.4434 8 6 3.8458 -1.5251 2.6393 9 6 5.3759 -1.5250 2.6393 10 1 5.7396 -0.5014 2.5502 11 6 5.8871 -2.3539 1.4578 12 6 7.4171 -2.3992 1.5003 13 6 7.8689 -2.9859 2.8397 14 7 7.3552 -2.1563 3.9371 15 6 7.8831 -2.6092 5.2310 16 6 9.3728 -2.3849 5.2719 17 1 9.8768 -1.9492 4.4219 18 6 10.0922 -2.7360 6.3944 19 7 9.4784 -3.2662 7.4297 20 14 11.9388 -2.4587 6.4449 21 1 12.2271 -1.0122 6.2720 22 1 12.4725 -2.9164 7.7529 23 1 12.5848 -3.2265 5.3501 24 6 5.8868 -2.1370 3.9456 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1299 -0.7209 -1.2495 34 1 3.9878 -0.4653 0.8049 35 1 3.4823 -2.5527 2.6391 36 1 3.4828 -1.0115 3.5295 37 1 5.4912 -3.3671 1.5252 38 1 5.5616 -1.8961 0.5236 39 1 7.8136 -1.3896 1.3930 40 1 7.7861 -3.0235 0.6866 41 1 8.9580 -3.0057 2.8785 42 1 7.4835 -4.0005 2.9402 43 1 7.4086 -2.0456 6.0344 44 1 7.6719 -3.6709 5.3581 45 1 9.9845 -3.5129 8.2196 46 1 5.5363 -1.5403 4.7877 47 1 5.5109 -3.1557 4.0409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112700879.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:09 Heat of formation + Delta-G solvation = -87.623398 kcal Electronic energy + Delta-G solvation = -22824.074055 eV Core-core repulsion = 19618.440305 eV Total energy + Delta-G solvation = -3205.633751 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27106 -39.95124 -36.77113 -36.47988 -35.04409 -33.50553 -32.21862 -29.09095 -28.18112 -28.12191 -27.02288 -25.54166 -23.64481 -23.49182 -22.10323 -20.80289 -20.13036 -18.45718 -17.74933 -17.15627 -16.91018 -16.48535 -16.10740 -15.79829 -15.34535 -15.20015 -15.07234 -14.81869 -14.51536 -14.38437 -14.03945 -13.72979 -13.48500 -13.27243 -13.14439 -13.00817 -12.97055 -12.84742 -12.66544 -12.59830 -12.52570 -12.09320 -11.99441 -11.87777 -11.82416 -11.63820 -11.55828 -11.17118 -11.07846 -10.66684 -10.61798 -10.09562 -9.03328 -8.21490 -6.32275 1.40646 1.44282 1.52179 1.65078 2.17079 2.40018 3.10662 3.25954 3.62740 3.77157 3.81837 3.89097 3.95707 3.98105 4.26722 4.29745 4.42308 4.46166 4.50952 4.66149 4.71583 4.74535 4.76062 4.81629 4.85590 4.91108 4.97341 4.97885 4.99798 5.04369 5.09505 5.17987 5.21672 5.24027 5.26589 5.33840 5.36581 5.37461 5.43344 5.54166 5.64484 6.04052 6.34276 6.56284 6.63829 6.84281 7.26264 7.37705 8.89764 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037063 B = 0.002955 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.282474 B = 9473.044880 C = 9751.889050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 C -0.139 4.139 4 C -0.138 4.138 5 C 0.514 3.486 6 O -0.591 6.591 7 N -0.710 5.710 8 C 0.134 3.866 9 C -0.078 4.078 10 H 0.091 0.909 11 C -0.106 4.106 12 C -0.106 4.106 13 C 0.060 3.940 14 N -0.538 5.538 15 C 0.207 3.793 16 C -0.523 4.523 17 H 0.066 0.934 18 C -0.001 4.001 19 N -0.937 5.937 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.061 3.939 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.415 0.585 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.007 0.993 43 H 0.001 0.999 44 H -0.043 1.043 45 H 0.264 0.736 46 H 0.059 0.941 47 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.796 7.786 -21.326 26.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.086 4.086 3 C -0.197 4.197 4 C -0.196 4.196 5 C 0.301 3.699 6 O -0.472 6.472 7 N -0.362 5.362 8 C 0.009 3.991 9 C -0.097 4.097 10 H 0.109 0.891 11 C -0.144 4.144 12 C -0.144 4.144 13 C -0.068 4.068 14 N -0.263 5.263 15 C 0.081 3.919 16 C -0.561 4.561 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.578 5.578 20 Si 0.796 3.204 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.068 4.068 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.252 0.748 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.079 0.921 42 H 0.025 0.975 43 H 0.019 0.981 44 H -0.026 1.026 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -13.141 7.863 -20.655 25.712 hybrid contribution 0.765 -1.078 1.140 1.745 sum -12.376 6.785 -19.515 24.084 Atomic orbital electron populations 1.21674 0.92433 1.01965 1.02439 1.20870 0.97742 0.97333 0.92624 1.21896 1.02064 0.92296 1.03397 1.21890 1.02122 0.99991 0.95563 1.21332 0.81974 0.78759 0.87798 1.90679 1.56627 1.50812 1.49050 1.45890 1.07099 1.58031 1.25221 1.21140 0.93277 0.96813 0.87887 1.21246 0.92437 1.01378 0.94615 0.89050 1.21615 0.95198 0.99695 0.97850 1.21568 0.95928 1.02021 0.94885 1.22032 0.99923 0.93076 0.91804 1.61954 1.06442 1.53462 1.04418 1.19359 0.95111 0.91128 0.86317 1.21435 0.92991 1.40489 1.01212 0.91569 1.25975 1.04115 0.94788 0.95021 1.70095 1.38121 1.43715 1.05836 0.85398 0.78608 0.79004 0.77389 1.19128 1.20985 1.19037 1.21994 0.88496 0.98195 0.98114 0.93648 0.89403 0.93529 0.90846 0.89151 0.93266 0.93090 0.89209 0.90723 0.74761 0.92623 0.92760 0.92728 0.88814 0.90906 0.89762 0.92088 0.97460 0.98100 1.02550 0.92688 0.92292 0.96690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.76 71.98 0.56 -1.46 16 2 C -0.08 -1.20 0.87 -52.93 -0.05 -1.25 16 3 C -0.14 -1.45 8.37 71.98 0.60 -0.85 16 4 C -0.14 -1.35 8.37 71.98 0.60 -0.75 16 5 C 0.51 11.69 6.48 87.66 0.57 12.25 16 6 O -0.59 -19.37 15.98 -3.04 -0.05 -19.42 16 7 N -0.71 -13.65 5.09 -463.06 -2.36 -16.01 16 8 C 0.13 3.28 5.07 86.38 0.44 3.72 16 9 C -0.08 -1.98 2.39 -10.74 -0.03 -2.00 16 10 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 11 C -0.11 -2.32 5.13 30.67 0.16 -2.16 16 12 C -0.11 -2.76 6.09 30.65 0.19 -2.57 16 13 C 0.06 2.26 5.30 86.33 0.46 2.72 16 14 N -0.54 -23.27 4.65 -900.90 -4.19 -27.46 16 15 C 0.21 11.34 4.72 85.56 0.40 11.75 16 16 C -0.52 -29.92 8.43 25.60 0.22 -29.70 16 17 H 0.07 3.66 7.12 -2.91 -0.02 3.64 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.94 -57.43 13.29 21.45 0.28 -57.15 16 20 Si 0.97 44.36 29.54 68.60 2.03 46.38 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C 0.06 2.20 4.74 86.33 0.41 2.61 16 25 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16 28 H 0.07 0.60 7.57 -2.39 -0.02 0.58 16 29 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 0.53 7.56 -2.39 -0.02 0.52 16 34 H 0.41 5.37 6.51 -92.70 -0.60 4.76 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.39 7.26 -2.39 -0.02 1.37 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 2.55 6.70 -2.39 -0.02 2.54 16 42 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.00 0.05 7.99 -2.38 -0.02 0.03 16 44 H -0.04 -2.59 8.12 -2.39 -0.02 -2.61 16 45 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.06 2.21 8.02 -2.39 -0.02 2.19 16 47 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 Total: -1.00 -72.57 366.24 1.02 -71.55 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.31 Total: 9.40 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 4.99 Total: -7.30 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -6.26 Total: -100.61 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.57 1.02 -71.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112700879.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.072 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds