Wall clock time and date at job start Tue Mar 31 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47486 * 2 1 4 4 C 1.53001 * 109.47458 * 239.99708 * 2 1 3 5 5 C 1.50709 * 109.47328 * 120.00033 * 2 1 3 6 6 O 1.21281 * 119.99537 * 359.97438 * 5 2 1 7 7 N 1.34773 * 120.00198 * 180.02562 * 5 2 1 8 8 C 1.46503 * 119.99765 * 179.97438 * 7 5 2 9 9 C 1.52998 * 109.46654 * 179.97438 * 8 7 5 10 10 H 1.08993 * 109.51233 * 304.92046 * 9 8 7 11 11 C 1.53119 * 109.50500 * 65.00356 * 9 8 7 12 12 C 1.53122 * 109.16302 * 177.63158 * 11 9 8 13 13 C 1.53032 * 109.27537 * 302.34302 * 12 11 9 14 14 N 1.46843 * 109.52564 * 59.18205 * 13 12 11 15 15 C 1.46905 * 111.00416 * 174.15951 * 14 13 12 16 16 C 1.50696 * 109.46934 * 66.04278 * 15 14 13 17 17 H 1.07999 * 120.00202 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99573 * 0.27650 * 18 16 15 20 20 Si 1.86800 * 119.99781 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46758 * 89.99934 * 20 18 16 22 22 H 1.48499 * 109.47026 * 209.99782 * 20 18 16 23 23 H 1.48496 * 109.47474 * 329.99818 * 20 18 16 24 24 C 1.46850 * 111.19780 * 298.25682 * 14 13 12 25 25 H 1.09008 * 109.47129 * 300.00240 * 1 2 3 26 26 H 1.09003 * 109.47201 * 59.99902 * 1 2 3 27 27 H 1.09004 * 109.47199 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47670 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46981 * 300.00233 * 3 2 1 30 30 H 1.08998 * 109.47239 * 59.99716 * 3 2 1 31 31 H 1.08999 * 109.47142 * 300.00787 * 4 2 1 32 32 H 1.09003 * 109.46596 * 60.00020 * 4 2 1 33 33 H 1.08992 * 109.47528 * 180.02562 * 4 2 1 34 34 H 0.96999 * 120.00317 * 359.97438 * 7 5 2 35 35 H 1.08996 * 109.47370 * 60.00198 * 8 7 5 36 36 H 1.08998 * 109.46978 * 299.99727 * 8 7 5 37 37 H 1.09006 * 109.52533 * 57.72460 * 11 9 8 38 38 H 1.09003 * 109.57287 * 297.57102 * 11 9 8 39 39 H 1.08995 * 109.50227 * 182.40221 * 12 11 9 40 40 H 1.08998 * 109.50427 * 62.28782 * 12 11 9 41 41 H 1.09005 * 109.46863 * 299.16203 * 13 12 11 42 42 H 1.09000 * 109.46028 * 179.19547 * 13 12 11 43 43 H 1.09000 * 109.46374 * 306.04610 * 15 14 13 44 44 H 1.08999 * 109.46732 * 186.04683 * 15 14 13 45 45 H 0.97001 * 120.00651 * 359.71956 * 19 18 16 46 46 H 1.09002 * 109.46534 * 181.76203 * 24 14 13 47 47 H 1.09005 * 109.46032 * 301.72459 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2442 -1.1709 2.0290 7 7 3.3574 -0.8331 1.4440 8 6 3.8457 -1.5233 2.6405 9 6 5.3757 -1.5234 2.6404 10 1 5.7396 -1.9592 1.7101 11 6 5.8870 -0.0855 2.7656 12 6 7.4170 -0.0995 2.8243 13 6 7.8695 -0.9638 4.0033 14 7 7.3558 -2.3293 3.8364 15 6 7.8844 -3.2216 4.8768 16 6 7.3491 -2.7989 6.2206 17 1 6.6832 -1.9518 6.2944 18 6 7.7104 -3.4929 7.3559 19 7 8.5264 -4.5204 7.2667 20 14 7.0474 -2.9684 9.0217 21 1 5.7724 -3.6796 9.2932 22 1 8.0366 -3.3057 10.0766 23 1 6.8062 -1.5032 9.0196 24 6 5.8874 -2.3465 3.8247 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 -1.7489 -1.2492 32 1 1.6767 -0.2074 -2.1392 33 1 3.1299 -0.7217 -1.2490 34 1 3.9878 -0.4645 0.8056 35 1 3.4827 -2.5510 2.6408 36 1 3.4821 -1.0093 3.5303 37 1 5.4916 0.3637 3.6767 38 1 5.5608 0.4946 1.9023 39 1 7.7854 0.9178 2.9564 40 1 7.8130 -0.5129 1.8968 41 1 7.4847 -0.5420 4.9318 42 1 8.9586 -0.9875 4.0393 43 1 8.9729 -3.1650 4.8851 44 1 7.5753 -4.2459 4.6683 45 1 8.8709 -4.7925 6.4017 46 1 5.5369 -3.3744 3.7312 47 1 5.5118 -1.9181 4.7541 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112700880.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:14 Heat of formation + Delta-G solvation = -70.883519 kcal Electronic energy + Delta-G solvation = -23120.629358 eV Core-core repulsion = 19915.721503 eV Total energy + Delta-G solvation = -3204.907855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.29727 -38.63646 -35.88833 -35.32312 -33.53751 -31.74787 -30.93991 -27.68721 -27.47626 -26.38807 -25.89685 -23.88588 -22.70988 -21.98128 -20.84889 -19.66735 -19.05552 -16.96570 -16.81527 -16.05890 -15.52831 -14.97420 -14.59476 -14.25083 -14.21066 -14.12204 -13.96289 -13.71055 -13.41017 -13.22532 -12.67347 -12.58109 -12.35300 -12.21825 -12.13445 -12.01645 -11.89397 -11.61101 -11.25145 -11.22455 -11.03984 -10.92810 -10.69729 -10.49973 -10.44013 -10.16318 -9.99171 -9.80333 -9.61649 -9.18282 -9.04285 -8.39673 -7.16545 -6.40406 -4.14683 2.60321 3.12247 3.40504 3.42721 3.58316 4.37402 4.46774 4.49468 4.57436 4.71564 4.93777 4.98984 5.06750 5.21161 5.23281 5.28922 5.33781 5.38037 5.50128 5.51651 5.57368 5.61341 5.66083 5.74549 5.76795 5.83766 5.89517 5.98371 6.02542 6.03644 6.14181 6.21904 6.33340 6.40661 6.44699 6.58998 6.67361 6.80808 7.03689 7.20054 7.45833 7.83516 8.09328 8.13755 8.19149 8.47927 8.77779 9.58849 10.96813 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024163 B = 0.003538 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.533827 B = 7911.880668 C = 8442.801857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.518 3.482 6 O -0.541 6.541 7 N -0.724 5.724 8 C 0.124 3.876 9 C -0.097 4.097 10 H 0.078 0.922 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.062 3.938 14 N -0.536 5.536 15 C 0.176 3.824 16 C -0.630 4.630 17 H 0.052 0.948 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 1.067 2.933 21 H -0.287 1.287 22 H -0.283 1.283 23 H -0.290 1.290 24 C 0.075 3.925 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.398 0.602 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.020 0.980 44 H 0.021 0.979 45 H 0.270 0.730 46 H 0.065 0.935 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.374 11.710 -17.307 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.091 4.091 3 C -0.198 4.198 4 C -0.198 4.198 5 C 0.304 3.696 6 O -0.417 6.417 7 N -0.375 5.375 8 C 0.000 4.000 9 C -0.116 4.116 10 H 0.096 0.904 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.066 4.066 14 N -0.259 5.259 15 C 0.050 3.950 16 C -0.669 4.669 17 H 0.070 0.930 18 C -0.183 4.183 19 N -0.545 5.545 20 Si 0.895 3.105 21 H -0.214 1.214 22 H -0.209 1.209 23 H -0.216 1.216 24 C -0.055 4.055 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.233 0.767 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.718 10.822 -15.544 21.762 hybrid contribution 0.062 0.802 -1.022 1.301 sum -10.656 11.624 -16.566 22.871 Atomic orbital electron populations 1.21653 0.92017 1.02860 1.01934 1.20826 0.98063 0.96411 0.93790 1.21866 1.01232 0.93819 1.02862 1.21866 1.01251 1.00690 0.95986 1.20559 0.82268 0.79556 0.87231 1.90704 1.55377 1.48569 1.47070 1.46059 1.06933 1.58818 1.25725 1.21415 0.94002 0.97378 0.87191 1.21477 0.92355 0.96679 1.01070 0.90370 1.21597 0.96378 0.95786 1.01075 1.21612 0.95057 0.98981 0.99732 1.21864 0.99281 0.89586 0.95917 1.62348 1.06438 1.08290 1.48852 1.19823 0.95032 0.91938 0.88212 1.22568 1.32778 1.17599 0.93914 0.93027 1.25758 0.95040 0.94141 1.03370 1.70761 1.29791 1.25383 1.28533 0.83572 0.76224 0.75356 0.75331 1.21370 1.20906 1.21604 1.21743 0.89657 0.98901 0.95169 0.91943 0.92136 0.91927 0.92114 0.91393 0.92004 0.91983 0.91396 0.92095 0.76711 0.91333 0.91433 0.92187 0.92893 0.92390 0.91848 0.94396 0.91940 0.96151 0.96094 0.91971 0.91610 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 7.76 37.15 0.29 -0.85 16 2 C -0.09 -0.77 0.87 -155.66 -0.14 -0.91 16 3 C -0.14 -0.98 8.37 37.16 0.31 -0.67 16 4 C -0.14 -0.98 8.37 37.16 0.31 -0.67 16 5 C 0.52 6.48 6.48 -10.98 -0.07 6.41 16 6 O -0.54 -9.10 15.98 5.56 0.09 -9.02 16 7 N -0.72 -8.14 5.09 -60.29 -0.31 -8.45 16 8 C 0.12 1.70 5.07 -4.04 -0.02 1.68 16 9 C -0.10 -1.37 2.39 -90.54 -0.22 -1.59 16 10 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 11 C -0.11 -1.46 5.13 -26.61 -0.14 -1.59 16 12 C -0.12 -1.66 6.09 -26.65 -0.16 -1.83 16 13 C 0.06 1.18 5.13 -3.84 -0.02 1.16 16 14 N -0.54 -11.24 4.86 -236.11 -1.15 -12.39 16 15 C 0.18 4.47 4.44 -4.97 -0.02 4.45 16 16 C -0.63 -17.37 7.74 -34.44 -0.27 -17.64 16 17 H 0.05 1.43 5.84 -52.49 -0.31 1.12 16 18 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 19 N -0.91 -27.46 13.65 55.43 0.76 -26.71 16 20 Si 1.07 25.35 29.90 -169.99 -5.08 20.27 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.07 1.41 4.30 -3.83 -0.02 1.40 16 25 H 0.06 0.62 8.10 -51.92 -0.42 0.20 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.06 0.38 7.56 -51.93 -0.39 -0.02 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.38 7.56 -51.93 -0.39 -0.01 16 34 H 0.40 3.50 6.50 -40.82 -0.27 3.23 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.56 7.25 -51.93 -0.38 0.18 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.80 7.03 -51.93 -0.37 0.43 16 42 H 0.06 1.21 8.06 -51.93 -0.42 0.79 16 43 H 0.02 0.55 7.92 -51.93 -0.41 0.14 16 44 H 0.02 0.57 8.01 -51.93 -0.42 0.15 16 45 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 46 H 0.07 1.30 8.12 -51.93 -0.42 0.87 16 47 H 0.04 0.92 6.57 -51.93 -0.34 0.58 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -31.77 361.84 -9.18 -40.95 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.69 Total: 0.00 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.25 Total: -10.11 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.70 Total: -47.54 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.27 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.77 -9.18 -40.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112700880.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.933 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds