Wall clock time and date at job start Tue Mar 31 2020 05:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34772 * 119.99981 * 2 1 4 4 O 1.21282 * 119.99854 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00224 * 0.02562 * 3 2 1 6 6 N 1.46895 * 109.47357 * 180.02562 * 5 3 2 7 7 C 1.46905 * 111.00174 * 188.58305 * 6 5 3 8 8 C 1.50701 * 109.47042 * 184.98900 * 7 6 5 9 9 H 1.07996 * 120.00153 * 4.39336 * 8 7 6 10 10 C 1.37881 * 119.99722 * 184.39085 * 8 7 6 11 11 N 1.31519 * 119.99686 * 180.02562 * 10 8 7 12 12 Si 1.86803 * 119.99916 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.46966 * 90.00312 * 12 10 8 14 14 H 1.48506 * 109.46577 * 209.99707 * 12 10 8 15 15 H 1.48495 * 109.47029 * 329.99764 * 12 10 8 16 16 C 1.46899 * 111.00425 * 64.62130 * 6 5 3 17 17 C 1.53000 * 109.46631 * 48.72352 * 16 6 5 18 18 C 1.53003 * 109.47559 * 37.92078 * 17 16 6 19 19 C 1.53004 * 109.47163 * 157.91915 * 17 16 6 20 20 C 1.53004 * 109.47303 * 277.91737 * 17 16 6 21 21 C 1.46507 * 120.00004 * 180.02562 * 2 1 3 22 22 C 1.53003 * 117.49595 * 8.62340 * 21 2 1 23 23 C 1.53004 * 117.49691 * 300.00165 * 21 2 1 24 24 H 1.08998 * 109.46961 * 89.99980 * 1 2 3 25 25 H 1.09003 * 109.47422 * 209.99524 * 1 2 3 26 26 H 1.08996 * 109.47131 * 329.99653 * 1 2 3 27 27 H 1.08998 * 109.47297 * 59.99213 * 5 3 2 28 28 H 1.09007 * 109.46910 * 299.99657 * 5 3 2 29 29 H 1.08996 * 109.46493 * 304.98762 * 7 6 5 30 30 H 1.08999 * 109.47430 * 64.98884 * 7 6 5 31 31 H 0.97001 * 119.99484 * 180.02562 * 11 10 8 32 32 H 1.08999 * 109.47374 * 168.71714 * 16 6 5 33 33 H 1.08990 * 109.47384 * 288.72465 * 16 6 5 34 34 H 1.09000 * 109.46768 * 61.67883 * 18 17 16 35 35 H 1.08993 * 109.47568 * 181.68600 * 18 17 16 36 36 H 1.09004 * 109.46453 * 301.68635 * 18 17 16 37 37 H 1.08997 * 109.47311 * 59.99884 * 19 17 16 38 38 H 1.09005 * 109.47128 * 179.97438 * 19 17 16 39 39 H 1.09000 * 109.46969 * 299.99745 * 19 17 16 40 40 H 1.09006 * 109.46840 * 97.91046 * 20 17 16 41 41 H 1.08993 * 109.47225 * 217.91098 * 20 17 16 42 42 H 1.09002 * 109.46532 * 337.91563 * 20 17 16 43 43 H 1.08992 * 115.54674 * 154.32938 * 21 2 1 44 44 H 1.08994 * 117.50186 * 359.97438 * 22 21 2 45 45 H 1.09001 * 117.49657 * 145.02300 * 22 21 2 46 46 H 1.08992 * 117.49473 * 214.98048 * 23 21 2 47 47 H 1.08999 * 117.49705 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3400 3.5888 -0.0002 7 6 1.6515 4.8702 0.2051 8 6 2.6419 5.9988 0.0764 9 1 3.6634 5.7912 -0.2063 10 6 2.2439 7.2963 0.3195 11 7 3.1081 8.2813 0.2067 12 14 0.4772 7.6551 0.8090 13 1 0.3530 7.6030 2.2879 14 1 0.0951 9.0070 0.3276 15 1 -0.4207 6.6408 0.2007 16 6 3.1279 3.6070 -1.2398 17 6 2.1902 3.4796 -2.4420 18 6 0.9083 4.2713 -2.1752 19 6 2.8816 4.0340 -3.6892 20 6 1.8427 2.0062 -2.6639 21 6 2.1975 -1.2688 -0.0006 22 6 1.3887 -2.5514 -0.2046 23 6 1.9630 -2.2204 1.1744 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 0.7590 2.5298 0.8907 28 1 0.7584 2.5302 -0.8892 29 1 0.8690 4.9862 -0.5447 30 1 1.2070 4.8886 1.2001 31 1 2.8281 9.1940 0.3781 32 1 3.6787 4.5453 -1.3065 33 1 3.8298 2.7732 -1.2365 34 1 1.1527 5.3257 -2.0467 35 1 0.2278 4.1561 -3.0188 36 1 0.4314 3.8959 -1.2697 37 1 3.7947 3.4701 -3.8794 38 1 2.2136 3.9428 -4.5458 39 1 3.1290 5.0837 -3.5311 40 1 0.8757 1.7886 -2.2104 41 1 1.7969 1.8008 -3.7334 42 1 2.6081 1.3795 -2.2060 43 1 3.2001 -1.2325 -0.4265 44 1 0.3115 -2.4513 -0.3380 45 1 1.8591 -3.3593 -0.7651 46 1 2.8113 -2.8104 1.5210 47 1 1.2641 -1.9023 1.9479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112981834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:13 Heat of formation + Delta-G solvation = 57.950266 kcal Electronic energy + Delta-G solvation = -24581.701337 eV Core-core repulsion = 21382.380134 eV Total energy + Delta-G solvation = -3199.321203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58138 -38.76311 -36.89902 -33.89640 -33.80189 -32.27319 -29.13644 -27.91272 -27.09054 -26.59139 -26.21476 -24.15345 -22.58088 -21.86125 -20.17025 -19.08292 -18.40473 -17.24447 -16.96194 -16.30189 -15.82446 -15.09247 -14.59696 -14.45460 -14.24870 -13.85871 -13.68428 -13.24872 -13.19856 -12.82735 -12.58440 -12.47853 -12.37714 -12.01692 -11.68740 -11.47837 -11.43267 -11.24958 -11.08841 -10.98795 -10.75524 -10.73907 -10.65677 -10.42810 -10.33449 -10.06142 -9.81085 -9.70855 -9.28440 -8.88946 -8.53222 -8.43085 -7.01061 -6.01672 -3.97461 2.89273 2.90949 3.28845 3.36115 3.36803 3.72187 4.43295 4.55058 4.71182 4.77774 4.82199 4.95678 5.07476 5.21923 5.27629 5.30433 5.36136 5.37345 5.40086 5.49843 5.64434 5.70785 5.73114 5.83670 5.87246 5.95263 5.98283 6.06803 6.15032 6.19213 6.39318 6.44768 6.50699 6.59785 6.67331 6.77953 6.86955 7.04298 7.11213 7.19561 7.42054 7.62528 7.99650 8.13852 8.52265 8.70498 9.06603 9.59355 11.10926 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.005207 C = 0.004807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.110909 B = 5376.328114 C = 5823.377975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.601 5.601 3 C 0.527 3.473 4 O -0.514 6.514 5 C 0.008 3.992 6 N -0.505 5.505 7 C 0.119 3.881 8 C -0.505 4.505 9 H 0.084 0.916 10 C 0.069 3.931 11 N -0.901 5.901 12 Si 0.872 3.128 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.267 1.267 16 C 0.059 3.941 17 C -0.098 4.098 18 C -0.163 4.163 19 C -0.132 4.132 20 C -0.152 4.152 21 C 0.089 3.911 22 C -0.189 4.189 23 C -0.195 4.195 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.016 0.984 31 H 0.263 0.737 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.131 0.869 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.099 0.901 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.257 -18.682 -3.929 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.336 5.336 3 C 0.316 3.684 4 O -0.388 6.388 5 C -0.123 4.123 6 N -0.227 5.227 7 C -0.006 4.006 8 C -0.543 4.543 9 H 0.101 0.899 10 C -0.132 4.132 11 N -0.540 5.540 12 Si 0.699 3.301 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.192 1.192 16 C -0.068 4.068 17 C -0.100 4.100 18 C -0.219 4.219 19 C -0.190 4.190 20 C -0.209 4.209 21 C -0.016 4.016 22 C -0.227 4.227 23 C -0.234 4.234 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.148 0.852 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.244 -18.489 -3.499 20.163 hybrid contribution -1.686 0.329 -0.213 1.731 sum -8.930 -18.160 -3.711 20.574 Atomic orbital electron populations 1.21806 0.79983 1.03197 1.01880 1.47419 1.06266 1.04728 1.75194 1.20848 0.88327 0.84588 0.74655 1.90648 1.13933 1.86676 1.47523 1.22712 0.96008 0.90448 1.03142 1.61920 1.23128 1.02215 1.35462 1.21196 0.96313 0.86640 0.96469 1.21082 0.97922 0.89150 1.46112 0.89864 1.24873 0.96862 0.96225 0.95234 1.69895 1.34286 0.99694 1.50105 0.86918 0.86171 0.77659 0.79309 1.20302 1.21402 1.19226 1.22605 0.95407 1.04171 0.84663 1.21215 0.96977 0.94015 0.97765 1.22829 0.96423 1.02677 0.99946 1.21813 0.99478 1.01592 0.96136 1.22474 1.00876 0.96791 1.00781 1.21528 0.97386 0.80450 1.02231 1.23360 1.00373 0.98762 1.00227 1.23372 1.03877 1.04002 0.92169 0.92514 0.91195 0.90634 0.89496 0.89582 0.94711 0.96570 0.92752 0.88459 0.90591 0.89760 0.94613 0.91018 0.93246 0.93750 0.91893 0.93028 0.93539 0.92104 0.85153 0.88351 0.88115 0.88244 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 9.49 59.85 0.57 1.24 16 2 N -0.60 -7.56 3.21 -173.93 -0.56 -8.11 16 3 C 0.53 8.70 4.82 -10.99 -0.05 8.64 16 4 O -0.51 -10.41 13.37 5.56 0.07 -10.33 16 5 C 0.01 0.13 2.97 -4.98 -0.01 0.11 16 6 N -0.50 -10.76 4.58 -237.52 -1.09 -11.84 16 7 C 0.12 2.78 3.17 -4.97 -0.02 2.76 16 8 C -0.50 -13.94 8.56 -34.44 -0.29 -14.23 16 9 H 0.08 2.53 6.21 -52.49 -0.33 2.21 16 10 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 11 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 12 Si 0.87 21.03 27.38 -169.99 -4.65 16.38 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 15 H -0.27 -6.04 6.67 56.52 0.38 -5.66 16 16 C 0.06 1.23 4.46 -3.82 -0.02 1.21 16 17 C -0.10 -1.68 0.77 -154.50 -0.12 -1.80 16 18 C -0.16 -2.86 6.10 37.16 0.23 -2.63 16 19 C -0.13 -2.13 8.14 37.16 0.30 -1.83 16 20 C -0.15 -2.26 7.43 37.16 0.28 -1.99 16 21 C 0.09 1.01 6.22 -67.92 -0.42 0.59 16 22 C -0.19 -1.53 9.72 -26.73 -0.26 -1.79 16 23 C -0.20 -1.81 10.13 -26.73 -0.27 -2.08 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.50 6.33 -51.93 -0.33 0.17 16 26 H 0.08 0.66 6.44 -51.93 -0.33 0.33 16 27 H 0.09 1.37 7.36 -51.93 -0.38 0.98 16 28 H 0.09 1.33 2.40 -51.92 -0.12 1.20 16 29 H 0.04 0.79 2.58 -54.04 -0.14 0.65 16 30 H 0.02 0.39 7.33 -51.93 -0.38 0.01 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.10 2.29 5.22 -51.93 -0.27 2.02 16 33 H 0.08 1.62 5.49 -51.93 -0.29 1.34 16 34 H 0.08 1.74 6.50 -51.93 -0.34 1.40 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.25 3.23 -51.93 -0.17 1.08 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 39 H 0.06 1.11 8.12 -51.93 -0.42 0.68 16 40 H 0.05 0.70 5.59 -51.93 -0.29 0.41 16 41 H 0.05 0.63 7.72 -51.93 -0.40 0.22 16 42 H 0.06 0.99 5.14 -51.93 -0.27 0.72 16 43 H 0.13 1.66 7.67 -51.93 -0.40 1.26 16 44 H 0.10 0.70 6.46 -51.93 -0.34 0.36 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.09 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 335.85 15.07 5.06 5.06 Total: -1.00 -31.84 335.85 -7.89 -39.73 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -7.31 Total: 5.56 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.19 Total: -9.92 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.87 Total: -46.47 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.33 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.65 Total: 16.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.84 -7.89 -39.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112981834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.677 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds