Wall clock time and date at job start Tue Mar 31 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99644 * 2 1 4 4 C 1.34770 * 120.00428 * 180.02562 * 2 1 3 5 5 O 1.21289 * 119.99942 * 5.40095 * 4 2 1 6 6 C 1.50698 * 120.00291 * 185.40615 * 4 2 1 7 7 H 1.08998 * 110.41752 * 323.43627 * 6 4 2 8 8 C 1.54900 * 110.37523 * 85.75165 * 6 4 2 9 9 C 1.55136 * 101.68964 * 155.88122 * 8 6 4 10 10 C 1.54367 * 102.99821 * 324.39287 * 9 8 6 11 11 N 1.47438 * 107.24675 * 22.23052 * 10 9 8 12 12 C 1.46896 * 110.99998 * 123.29259 * 11 10 9 13 13 C 1.53004 * 109.47513 * 76.81638 * 12 11 10 14 14 C 1.53003 * 109.47210 * 174.03164 * 13 12 11 15 15 C 1.53004 * 109.46867 * 294.03156 * 13 12 11 16 16 C 1.52999 * 109.46835 * 54.03113 * 13 12 11 17 17 C 1.50701 * 109.46981 * 180.02562 * 16 13 12 18 18 H 1.08001 * 119.99965 * 0.02562 * 17 16 13 19 19 C 1.37876 * 119.99877 * 179.97438 * 17 16 13 20 20 N 1.31513 * 119.99915 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99763 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47298 * 60.00250 * 21 19 17 23 23 H 1.48499 * 109.46974 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47146 * 299.99762 * 21 19 17 25 25 H 1.08998 * 109.46639 * 239.99471 * 1 2 3 26 26 H 1.08998 * 109.47270 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47300 * 119.99735 * 1 2 3 28 28 H 1.08996 * 109.47469 * 273.90818 * 3 2 1 29 29 H 1.09000 * 109.46808 * 33.91016 * 3 2 1 30 30 H 1.09003 * 109.46934 * 153.90607 * 3 2 1 31 31 H 1.09003 * 110.99304 * 273.99193 * 8 6 4 32 32 H 1.09000 * 110.99381 * 37.76858 * 8 6 4 33 33 H 1.08998 * 110.70801 * 82.74923 * 9 8 6 34 34 H 1.09001 * 110.70658 * 205.98208 * 9 8 6 35 35 H 1.08997 * 109.85268 * 262.83011 * 10 9 8 36 36 H 1.09000 * 110.03665 * 141.73146 * 10 9 8 37 37 H 1.09002 * 109.47252 * 196.81860 * 12 11 10 38 38 H 1.09007 * 109.47085 * 316.81433 * 12 11 10 39 39 H 1.08998 * 109.46691 * 54.45826 * 14 13 12 40 40 H 1.08997 * 109.46722 * 174.45964 * 14 13 12 41 41 H 1.08996 * 109.46783 * 294.45788 * 14 13 12 42 42 H 1.09004 * 109.46809 * 71.49390 * 15 13 12 43 43 H 1.08994 * 109.46873 * 191.48944 * 15 13 12 44 44 H 1.08989 * 109.46991 * 311.49651 * 15 13 12 45 45 H 1.08999 * 109.47346 * 300.00481 * 16 13 12 46 46 H 1.08998 * 109.47144 * 60.00537 * 16 13 12 47 47 H 0.97007 * 119.99468 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5367 -2.2151 -0.0999 6 6 3.6410 -1.1700 0.1224 7 1 4.0680 -0.3223 -0.4133 8 6 4.0601 -1.1325 1.6132 9 6 5.4774 -1.7608 1.5571 10 6 5.3401 -2.8292 0.4514 11 7 4.1972 -2.4386 -0.3943 12 6 4.6044 -2.3014 -1.7990 13 6 4.7535 -3.6897 -2.4248 14 6 5.0315 -3.5467 -3.9226 15 6 5.9166 -4.4272 -1.7583 16 6 3.4616 -4.4831 -2.2193 17 6 3.6087 -5.8507 -2.8351 18 1 4.5315 -6.1264 -3.3238 19 6 2.5655 -6.7501 -2.7737 20 7 1.4420 -6.4144 -2.1782 21 14 2.7481 -8.4456 -3.5364 22 1 3.8770 -9.1607 -2.8889 23 1 1.4941 -9.2156 -3.3371 24 1 3.0179 -8.3079 -4.9902 25 1 -0.3632 -0.5139 0.8899 26 1 -0.3634 1.0276 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 2.3185 1.6185 -1.0252 29 1 1.6404 2.0098 0.5733 30 1 3.1784 1.1220 0.4520 31 1 4.1017 -0.1074 1.9814 32 1 3.3888 -1.7372 2.2229 33 1 6.2200 -1.0126 1.2797 34 1 5.7322 -2.2229 2.5109 35 1 5.1531 -3.8046 0.9003 36 1 6.2498 -2.8653 -0.1481 37 1 3.8473 -1.7369 -2.3433 38 1 5.5575 -1.7750 -1.8513 39 1 5.8958 -2.8995 -4.0715 40 1 5.2350 -4.5287 -4.3496 41 1 4.1617 -3.1102 -4.4135 42 1 5.6344 -4.7093 -0.7440 43 1 6.1549 -5.3231 -2.3316 44 1 6.7890 -3.7747 -1.7246 45 1 3.2635 -4.5848 -1.1523 46 1 2.6331 -3.9576 -2.6941 47 1 0.7080 -7.0472 -2.1353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122787184.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:58 Heat of formation + Delta-G solvation = -24.029767 kcal Electronic energy + Delta-G solvation = -24318.370596 eV Core-core repulsion = 21115.494472 eV Total energy + Delta-G solvation = -3202.876124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13062 -38.25589 -35.92917 -35.20592 -32.27274 -30.80646 -29.94827 -27.77144 -26.86210 -26.48488 -25.69454 -25.02340 -22.61001 -21.72437 -20.76686 -18.69202 -17.86781 -17.09446 -16.11122 -15.85784 -15.45851 -15.27601 -14.81764 -14.25093 -13.60962 -13.50304 -13.35992 -13.04862 -12.76199 -12.70565 -12.57341 -12.45076 -12.36062 -12.09506 -11.90826 -11.75326 -11.52298 -11.38513 -11.03394 -10.81403 -10.76773 -10.60854 -10.54788 -10.19765 -10.12220 -9.96970 -9.45835 -9.30932 -8.77603 -8.55908 -8.48353 -8.06205 -7.68019 -5.67774 -3.69081 3.00650 3.12936 3.47338 3.51987 3.53570 4.28542 4.61036 4.67579 4.75416 4.93075 5.01380 5.06335 5.21379 5.27046 5.39540 5.48017 5.57336 5.63736 5.66048 5.68713 5.74591 5.78237 5.86684 5.93371 5.98057 6.04610 6.15118 6.21080 6.35617 6.43256 6.46109 6.56733 6.61955 6.84861 6.86052 7.13317 7.29964 7.34801 7.46223 7.60754 7.70322 8.05959 8.30104 8.51287 8.64784 8.76930 9.40384 9.91204 11.42049 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.005628 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.744913 B = 4973.580318 C = 5759.915796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.636 5.636 3 C 0.080 3.920 4 C 0.511 3.489 5 O -0.479 6.479 6 C 0.057 3.943 7 H 0.067 0.933 8 C -0.114 4.114 9 C -0.142 4.142 10 C 0.043 3.957 11 N -0.490 5.490 12 C 0.069 3.931 13 C -0.058 4.058 14 C -0.125 4.125 15 C -0.128 4.128 16 C 0.052 3.948 17 C -0.512 4.512 18 H 0.051 0.949 19 C 0.056 3.944 20 N -0.887 5.887 21 Si 0.879 3.121 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.281 1.281 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.023 0.977 45 H 0.039 0.961 46 H 0.006 0.994 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 17.921 7.150 20.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.374 5.374 3 C -0.063 4.063 4 C 0.296 3.704 5 O -0.348 6.348 6 C -0.056 4.056 7 H 0.084 0.916 8 C -0.152 4.152 9 C -0.181 4.181 10 C -0.084 4.084 11 N -0.213 5.213 12 C -0.059 4.059 13 C -0.059 4.059 14 C -0.183 4.183 15 C -0.184 4.184 16 C 0.015 3.985 17 C -0.550 4.550 18 H 0.069 0.931 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.708 3.292 22 H -0.206 1.206 23 H -0.216 1.216 24 H -0.206 1.206 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.042 0.958 45 H 0.057 0.943 46 H 0.024 0.976 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.075 16.842 7.143 18.985 hybrid contribution 0.535 -0.188 -0.615 0.836 sum 5.609 16.654 6.528 18.747 Atomic orbital electron populations 1.21520 0.79460 1.01420 1.02498 1.47818 1.06739 1.06199 1.76661 1.21790 0.97308 0.85727 1.01495 1.20567 0.89654 0.83118 0.77075 1.90862 1.69265 1.30461 1.44209 1.22478 0.92604 0.93681 0.96802 0.91570 1.22609 0.97330 1.01090 0.94168 1.22861 0.96174 0.98722 1.00295 1.23151 0.92787 0.98796 0.93698 1.63027 1.29444 1.26616 1.02246 1.22434 0.96940 0.98682 0.87838 1.20621 0.99443 0.92833 0.92993 1.21728 0.98818 1.01151 0.96577 1.21971 0.95631 0.99302 1.01544 1.18953 0.88782 0.92307 0.98501 1.21324 0.99062 0.99131 1.35506 0.93085 1.25000 0.95707 0.97828 0.95903 1.70030 1.03987 1.34982 1.43669 0.86880 0.77038 0.85604 0.79699 1.20567 1.21608 1.20644 0.92460 0.91314 0.92066 0.93010 0.91524 0.91052 0.90821 0.90087 0.91672 0.90598 0.90005 0.91616 0.92217 0.96038 0.95560 0.91874 0.93660 0.92245 0.92744 0.95814 0.94291 0.97573 0.93464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 10.17 59.85 0.61 1.75 16 2 N -0.64 -8.49 3.27 -189.51 -0.62 -9.11 16 3 C 0.08 0.69 10.06 59.85 0.60 1.29 16 4 C 0.51 8.96 6.93 -10.99 -0.08 8.88 16 5 O -0.48 -11.34 16.63 5.55 0.09 -11.25 16 6 C 0.06 0.84 1.76 -67.34 -0.12 0.72 16 7 H 0.07 0.84 6.42 -51.93 -0.33 0.51 16 8 C -0.11 -1.36 6.30 -24.60 -0.16 -1.52 16 9 C -0.14 -1.61 6.95 -24.88 -0.17 -1.79 16 10 C 0.04 0.66 4.91 -2.81 -0.01 0.64 16 11 N -0.49 -8.87 3.36 -224.73 -0.75 -9.62 16 12 C 0.07 1.26 3.88 -3.82 -0.01 1.25 16 13 C -0.06 -1.24 0.61 -154.50 -0.09 -1.34 16 14 C -0.12 -2.49 8.10 37.16 0.30 -2.19 16 15 C -0.13 -2.49 6.54 37.16 0.24 -2.25 16 16 C 0.05 1.42 3.79 -27.88 -0.11 1.31 16 17 C -0.51 -14.95 7.82 -34.44 -0.27 -15.22 16 18 H 0.05 1.44 5.76 -52.49 -0.30 1.13 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -28.71 13.29 55.43 0.74 -27.97 16 21 Si 0.88 22.80 29.54 -169.99 -5.02 17.78 16 22 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.58 7.85 -51.93 -0.41 0.17 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.42 8.00 -51.93 -0.42 0.00 16 30 H 0.07 0.54 5.41 -51.93 -0.28 0.26 16 31 H 0.07 0.66 7.49 -51.93 -0.39 0.27 16 32 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.38 7.41 -51.93 -0.38 1.00 16 36 H 0.07 0.95 5.21 -51.93 -0.27 0.68 16 37 H 0.06 1.15 7.97 -51.93 -0.41 0.73 16 38 H 0.02 0.34 7.68 -51.93 -0.40 -0.05 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.33 6.76 -51.93 -0.35 0.98 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.19 5.73 -51.93 -0.30 0.90 16 43 H 0.05 1.12 6.96 -51.93 -0.36 0.76 16 44 H 0.02 0.38 7.15 -51.94 -0.37 0.01 16 45 H 0.04 1.19 7.45 -51.93 -0.39 0.80 16 46 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 47 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -36.37 355.43 -7.87 -44.24 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.30 Total: -2.59 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 0.64 Total: -6.83 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.64 Total: -46.70 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.37 -7.87 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122787184.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.209 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds