Wall clock time and date at job start Tue Mar 31 2020 05:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 120.00492 * 2 1 4 4 C 1.34775 * 119.99942 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99775 * 0.02562 * 4 2 1 6 6 C 1.50703 * 120.00287 * 179.97438 * 4 2 1 7 7 H 1.09000 * 110.72411 * 56.90431 * 6 4 2 8 8 C 1.54937 * 110.66669 * 293.81041 * 6 4 2 9 9 C 1.54598 * 102.92136 * 204.14932 * 8 6 4 10 10 C 1.53992 * 105.13609 * 21.95556 * 9 8 6 11 11 N 1.47897 * 107.06249 * 1.22720 * 10 9 8 12 12 C 1.46900 * 111.00198 * 214.15529 * 11 10 9 13 13 C 1.53002 * 109.47337 * 77.18958 * 12 11 10 14 14 C 1.53002 * 109.47095 * 81.96466 * 13 12 11 15 15 C 1.53004 * 109.46689 * 321.97010 * 13 12 11 16 16 C 1.52998 * 109.47148 * 201.96765 * 13 12 11 17 17 C 1.50695 * 109.46908 * 179.97438 * 16 13 12 18 18 H 1.08002 * 120.00039 * 0.02562 * 17 16 13 19 19 C 1.37872 * 120.00064 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00204 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47193 * 60.00478 * 21 19 17 23 23 H 1.48503 * 109.46956 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47042 * 300.00282 * 21 19 17 25 25 H 1.08996 * 109.46853 * 270.00295 * 1 2 3 26 26 H 1.09011 * 109.46692 * 29.99529 * 1 2 3 27 27 H 1.08994 * 109.47144 * 149.99856 * 1 2 3 28 28 H 1.09000 * 109.47000 * 270.00818 * 3 2 1 29 29 H 1.09005 * 109.46588 * 29.99683 * 3 2 1 30 30 H 1.08996 * 109.47539 * 149.99988 * 3 2 1 31 31 H 1.09000 * 110.72479 * 85.78750 * 8 6 4 32 32 H 1.08998 * 110.72250 * 322.50832 * 8 6 4 33 33 H 1.08996 * 110.30681 * 263.04373 * 9 8 6 34 34 H 1.08993 * 110.39060 * 140.91290 * 9 8 6 35 35 H 1.08996 * 109.91826 * 241.86867 * 10 9 8 36 36 H 1.09004 * 109.91512 * 120.58025 * 10 9 8 37 37 H 1.08999 * 109.47218 * 317.18911 * 12 11 10 38 38 H 1.09001 * 109.46937 * 197.19120 * 12 11 10 39 39 H 1.08991 * 109.46795 * 159.06986 * 14 13 12 40 40 H 1.09000 * 109.47356 * 279.07553 * 14 13 12 41 41 H 1.09003 * 109.46451 * 39.07154 * 14 13 12 42 42 H 1.09004 * 109.47106 * 292.46057 * 15 13 12 43 43 H 1.08994 * 109.47240 * 52.45993 * 15 13 12 44 44 H 1.09005 * 109.46574 * 172.46721 * 15 13 12 45 45 H 1.08997 * 109.46892 * 300.00128 * 16 13 12 46 46 H 1.09004 * 109.47089 * 59.99974 * 16 13 12 47 47 H 0.96999 * 120.00086 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0015 6 6 3.6459 -1.1673 -0.0011 7 1 4.0320 -0.6108 0.8529 8 6 4.1922 -0.5818 -1.3275 9 6 5.6007 -1.2112 -1.4290 10 6 5.5435 -2.4697 -0.5434 11 7 4.1701 -2.5570 -0.0017 12 6 4.1743 -3.1186 1.3558 13 6 4.6230 -2.0458 2.3501 14 6 3.4349 -1.1488 2.7032 15 6 5.7319 -1.1996 1.7214 16 6 5.1509 -2.7164 3.6200 17 6 5.5935 -1.6598 4.5991 18 1 5.5064 -0.6145 4.3416 19 6 6.1085 -2.0274 5.8241 20 7 6.2140 -3.3002 6.1379 21 14 6.6564 -0.7176 7.0381 22 1 5.5033 0.1533 7.3806 23 1 7.1689 -1.3684 8.2706 24 1 7.7330 0.1035 6.4281 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 2.3792 1.5834 -1.0277 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1384 0.5138 31 1 4.2584 0.5048 -1.2712 32 1 3.5712 -0.8883 -2.1691 33 1 6.3528 -0.5178 -1.0528 34 1 5.8210 -1.4843 -2.4609 35 1 6.2599 -2.3819 0.2733 36 1 5.7639 -3.3544 -1.1408 37 1 4.8621 -3.9631 1.3975 38 1 3.1699 -3.4550 1.6129 39 1 3.6295 -0.6438 3.6493 40 1 3.2938 -0.4066 1.9175 41 1 2.5350 -1.7570 2.7943 42 1 6.6260 -1.8097 1.5928 43 1 5.4011 -0.8306 0.7506 44 1 5.9585 -0.3557 2.3730 45 1 4.3610 -3.3193 4.0678 46 1 5.9974 -3.3555 3.3684 47 1 6.5766 -3.5588 6.9996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122787380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:02 Heat of formation + Delta-G solvation = 28.059102 kcal Electronic energy + Delta-G solvation = -24933.819434 eV Core-core repulsion = 21733.202052 eV Total energy + Delta-G solvation = -3200.617381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26363 -38.67001 -35.55539 -35.38225 -32.53217 -30.97798 -30.15380 -27.74200 -27.27416 -26.59336 -25.93265 -25.53359 -22.73424 -21.58533 -20.67944 -18.98020 -18.18553 -17.36450 -16.27588 -15.92641 -15.69156 -15.29945 -14.76400 -14.51924 -14.28258 -13.80084 -13.76465 -13.07128 -12.75429 -12.68894 -12.66240 -12.37670 -12.22020 -12.07062 -12.03263 -11.70862 -11.44318 -11.24278 -11.14813 -10.97313 -10.87187 -10.79713 -10.53906 -10.36196 -10.27075 -9.89176 -9.69073 -9.36661 -9.29582 -8.97624 -8.62207 -8.35068 -7.61862 -5.98862 -4.00243 2.90029 3.02724 3.30576 3.36271 3.37123 4.32167 4.44747 4.62945 4.73351 4.95546 5.00637 5.06869 5.19813 5.34733 5.35902 5.37494 5.50398 5.55297 5.58811 5.63448 5.65845 5.75835 5.78497 5.80420 5.83137 6.00592 6.13154 6.17064 6.23566 6.30284 6.34703 6.48974 6.53263 6.60006 6.74847 7.00220 7.04026 7.17226 7.20632 7.47972 7.51790 7.66465 7.81382 7.99726 8.43041 8.44720 9.04427 9.62513 11.12228 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.005497 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.590494 B = 5092.839546 C = 5590.339611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.629 5.629 3 C 0.077 3.923 4 C 0.530 3.470 5 O -0.520 6.520 6 C 0.000 4.000 7 H 0.141 0.859 8 C -0.117 4.117 9 C -0.128 4.128 10 C 0.008 3.992 11 N -0.490 5.490 12 C 0.052 3.948 13 C -0.092 4.092 14 C -0.149 4.149 15 C -0.162 4.162 16 C 0.039 3.961 17 C -0.511 4.511 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.887 3.113 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.016 0.984 46 H 0.015 0.985 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.227 9.763 -15.078 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.365 5.365 3 C -0.066 4.066 4 C 0.317 3.683 5 O -0.394 6.394 6 C -0.110 4.110 7 H 0.158 0.842 8 C -0.155 4.155 9 C -0.166 4.166 10 C -0.120 4.120 11 N -0.213 5.213 12 C -0.075 4.075 13 C -0.093 4.093 14 C -0.205 4.205 15 C -0.218 4.218 16 C 0.001 3.999 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.715 3.285 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.035 0.965 46 H 0.034 0.966 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.833 8.680 -15.258 18.498 hybrid contribution 0.783 1.195 1.398 1.999 sum -5.050 9.875 -13.860 17.751 Atomic orbital electron populations 1.21564 0.79606 1.02631 1.01699 1.47718 1.06733 1.06388 1.75681 1.21882 0.97613 0.85564 1.01574 1.20498 0.89788 0.82863 0.75121 1.90659 1.69981 1.30906 1.47838 1.24087 0.91738 0.94063 1.01127 0.84246 1.22540 0.96751 0.99593 0.96610 1.22387 0.96550 0.97270 1.00431 1.23502 0.91727 0.97657 0.99073 1.64669 1.17777 1.16298 1.22529 1.22586 1.02066 0.97214 0.85684 1.21183 0.94646 0.95521 0.97979 1.22454 0.97505 0.98951 1.01623 1.22788 0.98697 1.00631 0.99725 1.19088 0.95699 0.95399 0.89693 1.21168 1.40937 0.92905 0.99912 0.92543 1.25012 0.96139 0.95065 0.98235 1.69954 1.45987 1.15105 1.22360 0.86743 0.78966 0.81959 0.80814 1.20380 1.21367 1.20368 0.92932 0.91648 0.90733 0.92623 0.91102 0.90812 0.90715 0.91014 0.91128 0.91197 0.90105 0.91075 0.91089 0.90511 0.90878 0.93968 0.93668 0.92367 0.92082 0.92169 0.96540 0.96637 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.44 59.85 0.62 1.57 16 2 N -0.63 -7.84 3.27 -189.51 -0.62 -8.46 16 3 C 0.08 0.69 8.85 59.85 0.53 1.22 16 4 C 0.53 8.50 5.43 -10.98 -0.06 8.44 16 5 O -0.52 -10.40 15.53 5.56 0.09 -10.32 16 6 C 0.00 0.00 0.43 -66.94 -0.03 -0.03 16 7 H 0.14 2.11 1.31 -51.93 -0.07 2.04 16 8 C -0.12 -1.35 5.63 -24.87 -0.14 -1.49 16 9 C -0.13 -1.45 6.17 -25.37 -0.16 -1.61 16 10 C 0.01 0.11 5.74 -2.76 -0.02 0.09 16 11 N -0.49 -8.24 4.82 -223.99 -1.08 -9.32 16 12 C 0.05 1.00 4.91 -3.82 -0.02 0.98 16 13 C -0.09 -1.83 0.53 -154.50 -0.08 -1.91 16 14 C -0.15 -2.85 7.33 37.16 0.27 -2.58 16 15 C -0.16 -2.85 5.90 37.16 0.22 -2.64 16 16 C 0.04 0.97 3.93 -27.89 -0.11 0.86 16 17 C -0.51 -13.74 7.43 -34.44 -0.26 -13.99 16 18 H 0.06 1.46 5.91 -52.49 -0.31 1.15 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 21 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.50 8.07 -51.92 -0.42 0.08 16 27 H 0.07 0.90 7.42 -51.93 -0.39 0.52 16 28 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 29 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 30 H 0.07 0.69 5.40 -51.93 -0.28 0.41 16 31 H 0.07 0.68 6.59 -51.93 -0.34 0.34 16 32 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 33 H 0.07 0.72 7.82 -51.93 -0.41 0.32 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.22 4.04 -51.93 -0.21 1.01 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.37 7.78 -51.93 -0.40 0.97 16 38 H 0.08 1.61 7.24 -51.93 -0.38 1.24 16 39 H 0.07 1.53 6.24 -51.93 -0.32 1.20 16 40 H 0.04 0.69 3.29 -51.93 -0.17 0.52 16 41 H 0.04 0.91 7.64 -51.93 -0.40 0.51 16 42 H 0.06 1.05 6.40 -51.93 -0.33 0.72 16 43 H 0.06 0.90 1.97 -51.93 -0.10 0.80 16 44 H 0.06 1.12 6.88 -51.93 -0.36 0.76 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -32.42 332.75 -7.57 -39.99 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.37 Total: 2.30 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 0.68 Total: -9.60 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: -0.96 Total: -43.68 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.42 -7.57 -39.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122787380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.050 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds