Wall clock time and date at job start Tue Mar 31 2020 05:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 120.00492 * 2 1 4 4 C 1.34775 * 119.99942 * 180.02562 * 2 1 3 5 5 O 1.21283 * 119.99775 * 0.02562 * 4 2 1 6 6 C 1.50703 * 120.00287 * 179.97438 * 4 2 1 7 7 H 1.09000 * 110.72411 * 56.90431 * 6 4 2 8 8 C 1.54937 * 110.66669 * 293.81041 * 6 4 2 9 9 C 1.54598 * 102.92136 * 204.14932 * 8 6 4 10 10 C 1.53992 * 105.13609 * 21.95556 * 9 8 6 11 11 N 1.47897 * 107.06249 * 1.22720 * 10 9 8 12 12 C 1.46900 * 111.00198 * 214.15529 * 11 10 9 13 13 C 1.53002 * 109.47337 * 77.18958 * 12 11 10 14 14 C 1.53002 * 109.47095 * 81.96466 * 13 12 11 15 15 C 1.53004 * 109.46689 * 321.97010 * 13 12 11 16 16 C 1.52998 * 109.47148 * 201.96765 * 13 12 11 17 17 C 1.50695 * 109.46908 * 179.97438 * 16 13 12 18 18 H 1.08002 * 120.00039 * 0.02562 * 17 16 13 19 19 C 1.37872 * 120.00064 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00114 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00204 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47193 * 60.00478 * 21 19 17 23 23 H 1.48503 * 109.46956 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47042 * 300.00282 * 21 19 17 25 25 H 1.08996 * 109.46853 * 270.00295 * 1 2 3 26 26 H 1.09011 * 109.46692 * 29.99529 * 1 2 3 27 27 H 1.08994 * 109.47144 * 149.99856 * 1 2 3 28 28 H 1.09000 * 109.47000 * 270.00818 * 3 2 1 29 29 H 1.09005 * 109.46588 * 29.99683 * 3 2 1 30 30 H 1.08996 * 109.47539 * 149.99988 * 3 2 1 31 31 H 1.09000 * 110.72479 * 85.78750 * 8 6 4 32 32 H 1.08998 * 110.72250 * 322.50832 * 8 6 4 33 33 H 1.08996 * 110.30681 * 263.04373 * 9 8 6 34 34 H 1.08993 * 110.39060 * 140.91290 * 9 8 6 35 35 H 1.08996 * 109.91826 * 241.86867 * 10 9 8 36 36 H 1.09004 * 109.91512 * 120.58025 * 10 9 8 37 37 H 1.08999 * 109.47218 * 317.18911 * 12 11 10 38 38 H 1.09001 * 109.46937 * 197.19120 * 12 11 10 39 39 H 1.08991 * 109.46795 * 159.06986 * 14 13 12 40 40 H 1.09000 * 109.47356 * 279.07553 * 14 13 12 41 41 H 1.09003 * 109.46451 * 39.07154 * 14 13 12 42 42 H 1.09004 * 109.47106 * 292.46057 * 15 13 12 43 43 H 1.08994 * 109.47240 * 52.45993 * 15 13 12 44 44 H 1.09005 * 109.46574 * 172.46721 * 15 13 12 45 45 H 1.08997 * 109.46892 * 300.00128 * 16 13 12 46 46 H 1.09004 * 109.47089 * 59.99974 * 16 13 12 47 47 H 0.96999 * 120.00086 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5324 -2.2175 -0.0015 6 6 3.6459 -1.1673 -0.0011 7 1 4.0320 -0.6108 0.8529 8 6 4.1922 -0.5818 -1.3275 9 6 5.6007 -1.2112 -1.4290 10 6 5.5435 -2.4697 -0.5434 11 7 4.1701 -2.5570 -0.0017 12 6 4.1743 -3.1186 1.3558 13 6 4.6230 -2.0458 2.3501 14 6 3.4349 -1.1488 2.7032 15 6 5.7319 -1.1996 1.7214 16 6 5.1509 -2.7164 3.6200 17 6 5.5935 -1.6598 4.5991 18 1 5.5064 -0.6145 4.3416 19 6 6.1085 -2.0274 5.8241 20 7 6.2140 -3.3002 6.1379 21 14 6.6564 -0.7176 7.0381 22 1 5.5033 0.1533 7.3806 23 1 7.1689 -1.3684 8.2706 24 1 7.7330 0.1035 6.4281 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 2.3792 1.5834 -1.0277 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1384 0.5138 31 1 4.2584 0.5048 -1.2712 32 1 3.5712 -0.8883 -2.1691 33 1 6.3528 -0.5178 -1.0528 34 1 5.8210 -1.4843 -2.4609 35 1 6.2599 -2.3819 0.2733 36 1 5.7639 -3.3544 -1.1408 37 1 4.8621 -3.9631 1.3975 38 1 3.1699 -3.4550 1.6129 39 1 3.6295 -0.6438 3.6493 40 1 3.2938 -0.4066 1.9175 41 1 2.5350 -1.7570 2.7943 42 1 6.6260 -1.8097 1.5928 43 1 5.4011 -0.8306 0.7506 44 1 5.9585 -0.3557 2.3730 45 1 4.3610 -3.3193 4.0678 46 1 5.9974 -3.3555 3.3684 47 1 6.5766 -3.5588 6.9996 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122787380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:01 Heat of formation + Delta-G solvation = 5.372901 kcal Electronic energy + Delta-G solvation = -24934.803181 eV Core-core repulsion = 21733.202052 eV Total energy + Delta-G solvation = -3201.601129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54976 -39.89848 -37.06963 -36.48480 -34.51562 -32.33082 -31.32991 -29.14396 -28.60634 -28.04291 -27.21212 -26.79549 -24.64741 -22.72111 -21.75008 -20.23004 -19.76856 -18.58495 -18.20443 -17.15564 -16.87953 -16.53623 -16.31430 -15.85089 -15.63836 -15.24708 -15.08525 -14.43523 -14.16915 -13.98061 -13.83087 -13.49839 -13.43652 -13.39271 -13.01551 -12.91972 -12.85992 -12.74546 -12.59415 -12.57538 -12.47355 -12.28805 -12.06181 -11.94134 -11.79531 -11.42130 -11.30419 -11.08589 -10.83874 -10.56243 -10.52739 -9.59841 -9.00523 -8.14699 -6.24077 1.40076 1.42634 1.49951 1.71557 2.05329 2.42230 3.15627 3.18130 3.55677 3.65043 3.92988 3.96442 4.03824 4.06200 4.18804 4.32618 4.40378 4.46372 4.52782 4.55431 4.59059 4.65677 4.72185 4.80226 4.84312 4.89760 4.92528 4.94325 4.99809 5.02146 5.03525 5.12398 5.19574 5.34932 5.36595 5.40185 5.49523 5.50855 5.58761 5.74571 5.85999 5.96817 6.10909 6.29250 6.43954 6.90015 7.30290 7.43607 8.96849 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.005497 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.590494 B = 5092.839546 C = 5590.339611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.625 5.625 3 C 0.065 3.935 4 C 0.519 3.481 5 O -0.574 6.574 6 C -0.003 4.003 7 H 0.137 0.863 8 C -0.109 4.109 9 C -0.122 4.122 10 C 0.000 4.000 11 N -0.504 5.504 12 C 0.065 3.935 13 C -0.084 4.084 14 C -0.138 4.138 15 C -0.153 4.153 16 C 0.045 3.955 17 C -0.515 4.515 18 H 0.071 0.929 19 C -0.005 4.005 20 N -0.938 5.938 21 Si 0.959 3.041 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.263 1.263 25 H 0.049 0.951 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.024 0.976 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.055 0.945 45 H -0.025 1.025 46 H -0.013 1.013 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 13.768 -16.806 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.359 5.359 3 C -0.077 4.077 4 C 0.308 3.692 5 O -0.453 6.453 6 C -0.113 4.113 7 H 0.154 0.846 8 C -0.147 4.147 9 C -0.160 4.160 10 C -0.127 4.127 11 N -0.227 5.227 12 C -0.064 4.064 13 C -0.086 4.086 14 C -0.194 4.194 15 C -0.209 4.209 16 C 0.008 3.992 17 C -0.553 4.553 18 H 0.089 0.911 19 C -0.202 4.202 20 N -0.579 5.579 21 Si 0.784 3.216 22 H -0.193 1.193 23 H -0.216 1.216 24 H -0.187 1.187 25 H 0.068 0.932 26 H 0.123 0.877 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.114 0.886 44 H 0.074 0.926 45 H -0.006 1.006 46 H 0.005 0.995 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.210 12.752 -17.010 21.888 hybrid contribution 0.519 -0.091 1.893 1.965 sum -4.691 12.661 -15.117 20.269 Atomic orbital electron populations 1.21699 0.78757 1.03548 1.01849 1.47853 1.07579 1.06690 1.73773 1.22231 0.97575 0.84119 1.03785 1.20805 0.90350 0.83222 0.74829 1.90638 1.70913 1.33051 1.50665 1.24115 0.91315 0.92842 1.03045 0.84649 1.22614 0.96328 1.01649 0.94133 1.22420 0.96904 0.95737 1.00953 1.23603 0.89836 0.99903 0.99349 1.64628 1.19693 1.18126 1.20213 1.22264 0.99815 0.96848 0.87464 1.21044 0.95799 0.95964 0.95786 1.22350 0.96104 0.99013 1.01945 1.22744 0.97383 0.99658 1.01120 1.18956 0.93394 0.94771 0.92091 1.21540 1.39974 0.93685 1.00112 0.91139 1.25974 0.96399 0.97248 1.00545 1.70123 1.47346 1.17546 1.22935 0.85590 0.78998 0.79067 0.77948 1.19311 1.21614 1.18746 0.93200 0.87708 0.92804 0.89800 0.88800 0.90944 0.86970 0.91238 0.89107 0.89171 0.91067 0.90914 0.92442 0.93426 0.92506 0.90498 0.95701 0.92932 0.88556 0.92645 1.00614 0.99468 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.65 10.44 127.77 1.33 2.98 16 2 N -0.62 -14.07 3.27 -871.87 -2.85 -16.92 16 3 C 0.06 0.86 8.85 127.77 1.13 1.99 16 4 C 0.52 16.21 5.43 87.66 0.48 16.69 16 5 O -0.57 -23.65 15.53 -3.04 -0.05 -23.70 16 6 C 0.00 -0.08 0.43 44.52 0.02 -0.06 16 7 H 0.14 3.77 1.31 -2.39 0.00 3.77 16 8 C -0.11 -2.08 5.63 31.80 0.18 -1.90 16 9 C -0.12 -2.27 6.17 31.47 0.19 -2.08 16 10 C 0.00 0.00 5.74 86.45 0.50 0.50 16 11 N -0.50 -16.90 4.82 -862.58 -4.15 -21.05 16 12 C 0.06 2.62 4.91 86.30 0.42 3.05 16 13 C -0.08 -3.45 0.53 -52.18 -0.03 -3.48 16 14 C -0.14 -5.33 7.33 71.98 0.53 -4.81 16 15 C -0.15 -5.21 5.90 71.98 0.42 -4.78 16 16 C 0.05 2.41 3.93 29.85 0.12 2.53 16 17 C -0.52 -28.18 7.43 25.60 0.19 -27.99 16 18 H 0.07 3.59 5.91 -2.91 -0.02 3.58 16 19 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 20 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 21 Si 0.96 43.72 29.54 68.60 2.03 45.74 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.10 1.22 8.07 -2.38 -0.02 1.20 16 27 H 0.05 1.29 7.42 -2.39 -0.02 1.28 16 28 H 0.08 0.71 7.71 -2.39 -0.02 0.69 16 29 H 0.09 0.87 8.07 -2.38 -0.02 0.85 16 30 H 0.07 1.00 5.40 -2.39 -0.01 0.99 16 31 H 0.11 1.34 6.59 -2.39 -0.02 1.33 16 32 H 0.07 1.42 8.05 -2.39 -0.02 1.40 16 33 H 0.09 1.38 7.82 -2.39 -0.02 1.36 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.07 2.08 4.04 -2.39 -0.01 2.07 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 2.41 7.78 -2.39 -0.02 2.39 16 38 H 0.05 2.17 7.24 -2.39 -0.02 2.15 16 39 H 0.06 2.37 6.24 -2.39 -0.01 2.36 16 40 H 0.08 2.42 3.29 -2.39 -0.01 2.41 16 41 H 0.02 1.03 7.64 -2.39 -0.02 1.01 16 42 H 0.05 1.86 6.40 -2.38 -0.02 1.85 16 43 H 0.10 2.59 1.97 -2.39 0.00 2.58 16 44 H 0.05 1.94 6.88 -2.38 -0.02 1.92 16 45 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 46 H -0.01 -0.76 8.12 -2.38 -0.02 -0.78 16 47 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -75.39 332.75 2.18 -73.21 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.97 Total: 17.45 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 5.95 Total: -17.18 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -6.72 Total: -95.52 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.05 Total: -23.70 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -75.39 2.18 -73.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122787380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.586 kcal (2) G-P(sol) polarization free energy of solvation -75.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds