Wall clock time and date at job start Tue Mar 31 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47284 * 2 1 4 4 C 1.52995 * 109.47278 * 239.99482 * 2 1 3 5 5 C 1.50704 * 109.47024 * 60.00184 * 4 2 1 6 6 H 1.08001 * 119.99961 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00406 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00382 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99594 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47070 * 89.99900 * 9 7 5 11 11 H 1.48501 * 109.47121 * 209.99815 * 9 7 5 12 12 H 1.48497 * 109.47335 * 329.99853 * 9 7 5 13 13 C 1.53004 * 109.47357 * 119.99583 * 2 1 3 14 14 N 1.46904 * 109.47152 * 300.00493 * 13 2 1 15 15 C 1.46896 * 111.00095 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47114 * 179.97438 * 15 14 13 17 17 C 1.53006 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 O 1.21282 * 120.00025 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00035 * 179.97438 * 18 17 16 21 21 C 1.46496 * 119.99846 * 180.02562 * 20 18 17 22 22 C 1.53003 * 117.49700 * 223.62259 * 21 20 18 23 23 C 1.52999 * 60.00284 * 252.51102 * 22 21 20 24 24 H 1.09000 * 109.47133 * 300.00442 * 1 2 3 25 25 H 1.08997 * 109.46976 * 60.00444 * 1 2 3 26 26 H 1.08999 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47354 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.46743 * 299.99688 * 3 2 1 29 29 H 1.08992 * 109.47092 * 59.99731 * 3 2 1 30 30 H 1.09002 * 109.47437 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47405 * 300.00334 * 4 2 1 32 32 H 0.97000 * 120.00042 * 180.02562 * 8 7 5 33 33 H 1.08996 * 109.47707 * 180.02562 * 13 2 1 34 34 H 1.09001 * 109.46584 * 59.99585 * 13 2 1 35 35 H 1.00899 * 110.99247 * 303.94883 * 14 13 2 36 36 H 1.09001 * 109.47267 * 59.99263 * 15 14 13 37 37 H 1.09004 * 109.47041 * 299.99667 * 15 14 13 38 38 H 1.09001 * 109.46832 * 59.99999 * 16 15 14 39 39 H 1.08993 * 109.47194 * 299.99521 * 16 15 14 40 40 H 1.09001 * 109.46801 * 300.00272 * 17 16 15 41 41 H 1.09001 * 109.46998 * 59.99868 * 17 16 15 42 42 H 0.96998 * 119.99962 * 0.02562 * 20 18 17 43 43 H 1.08997 * 115.55382 * 9.33363 * 21 20 18 44 44 H 1.08994 * 117.49898 * 0.02562 * 22 21 20 45 45 H 1.09003 * 117.49491 * 145.02442 * 22 21 20 46 46 H 1.08997 * 117.50444 * 252.51321 * 23 22 21 47 47 H 1.08998 * 117.52052 * 107.47472 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8712 -0.4817 -3.7319 8 7 1.4325 0.1379 -4.8058 9 14 2.9463 -1.9998 -3.9032 10 1 2.0887 -3.2112 -3.9486 11 1 3.7383 -1.9067 -5.1560 12 1 3.8667 -2.0882 -2.7412 13 6 2.0401 -0.7212 1.2493 14 7 1.5503 -0.0287 2.4487 15 6 2.0209 -0.6950 3.6704 16 6 1.4923 0.0536 4.8955 17 6 1.9819 -0.6408 6.1680 18 6 1.4617 0.0969 7.3748 19 8 0.7674 1.0809 7.2313 20 7 1.7673 -0.3374 8.6135 21 6 1.2612 0.3794 9.7866 22 6 2.2355 0.6215 10.9411 23 6 1.1158 -0.4106 11.0888 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8899 30 1 3.1300 -0.7209 -1.2494 31 1 1.6767 -1.7490 -1.2491 32 1 1.6668 -0.1936 -5.6867 33 1 3.1300 -0.7208 1.2496 34 1 1.6766 -1.7488 1.2493 35 1 1.8198 0.9436 2.4401 36 1 3.1107 -0.6952 3.6874 37 1 1.6570 -1.7224 3.6870 38 1 0.4024 0.0541 4.8787 39 1 1.8564 1.0808 4.8788 40 1 1.6174 -1.6680 6.1845 41 1 3.0717 -0.6418 6.1850 42 1 2.3223 -1.1246 8.7283 43 1 0.5209 1.1527 9.5818 44 1 3.2531 0.2479 10.8277 45 1 2.1363 1.5545 11.4961 46 1 0.2800 -0.1568 11.7408 47 1 1.3962 -1.4638 11.0725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135149469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:35 Heat of formation + Delta-G solvation = -37.361701 kcal Electronic energy + Delta-G solvation = -21610.836247 eV Core-core repulsion = 18407.382007 eV Total energy + Delta-G solvation = -3203.454240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17463 -37.91771 -37.50095 -35.33017 -33.34118 -32.61993 -31.64702 -27.88917 -26.87122 -26.32406 -24.60373 -22.91290 -22.69588 -21.72180 -21.42356 -20.70998 -17.83372 -17.42861 -16.89654 -16.75639 -16.26685 -15.34492 -15.05846 -14.83843 -14.33807 -14.04383 -13.90051 -13.77642 -13.21332 -13.13509 -12.72785 -12.40012 -12.19668 -12.11030 -11.97632 -11.84290 -11.75303 -11.39821 -11.07592 -11.02224 -10.97239 -10.85117 -10.74597 -10.46607 -10.31721 -10.16028 -9.75254 -9.65674 -9.24628 -9.19699 -8.86742 -8.47269 -8.11498 -5.97319 -3.93280 2.26160 2.65487 3.33744 3.41156 3.41726 3.44525 4.25188 4.28784 4.39956 4.44165 4.48959 4.50374 4.79780 4.96777 5.09949 5.19060 5.28544 5.33519 5.35525 5.40541 5.49467 5.54334 5.60932 5.65558 5.71502 5.91808 6.05009 6.07063 6.16418 6.25665 6.29751 6.46453 6.64891 6.73977 6.84539 7.06303 7.12137 7.17981 7.23842 7.34892 7.37168 7.49982 7.67675 7.87670 7.88451 8.62990 9.08944 9.65748 11.15800 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.050007 B = 0.002182 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.783817 B =12826.579248 C =13103.359600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 C -0.131 4.131 4 C -0.004 4.004 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.068 3.932 14 N -0.687 5.687 15 C 0.058 3.942 16 C -0.102 4.102 17 C -0.138 4.138 18 C 0.517 3.483 19 O -0.533 6.533 20 N -0.708 5.708 21 C 0.079 3.921 22 C -0.195 4.195 23 C -0.190 4.190 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.012 0.988 31 H 0.010 0.990 32 H 0.261 0.739 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.340 0.660 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.401 0.599 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.320 -3.256 30.380 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.050 4.050 3 C -0.188 4.188 4 C -0.042 4.042 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.319 5.319 15 C -0.071 4.071 16 C -0.141 4.141 17 C -0.178 4.178 18 C 0.304 3.696 19 O -0.408 6.408 20 N -0.359 5.359 21 C -0.027 4.027 22 C -0.233 4.233 23 C -0.229 4.229 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.083 0.917 35 H 0.160 0.840 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.236 0.764 43 H 0.155 0.845 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.211 -2.866 30.038 30.255 hybrid contribution 1.941 -1.127 -0.069 2.245 sum 4.151 -3.994 29.969 30.517 Atomic orbital electron populations 1.21617 0.94506 1.00647 1.00774 1.20429 0.96254 0.95086 0.93266 1.21783 0.99549 0.96474 1.01032 1.19629 0.95774 0.95453 0.93361 1.21152 1.31341 1.13239 0.88690 0.90402 1.25027 0.95856 0.96760 0.96044 1.69911 1.46185 1.40643 0.97799 0.86840 0.81286 0.84065 0.77406 1.20458 1.21607 1.19222 1.22130 0.96180 0.98103 0.89650 1.60495 1.63759 1.06530 1.01067 1.21936 0.96623 0.98649 0.89940 1.21314 1.02653 0.99259 0.90840 1.21650 1.02480 1.00833 0.92854 1.20869 0.79825 0.84698 0.84184 1.90726 1.37451 1.26445 1.86174 1.45468 1.53914 1.31552 1.04980 1.21614 1.00843 0.99347 0.80920 1.23427 0.95980 1.01283 1.02641 1.23377 1.01570 0.97852 1.00068 0.93576 0.92144 0.94259 0.94185 0.91156 0.94474 0.96977 0.97171 0.92923 0.95984 0.91653 0.84030 0.95794 0.91273 0.90183 0.91350 0.88614 0.88886 0.76426 0.84456 0.88507 0.87964 0.87840 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.06 37.16 0.30 -2.03 16 2 C -0.05 -0.98 0.60 -154.51 -0.09 -1.07 16 3 C -0.13 -2.46 7.89 37.16 0.29 -2.17 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 5 C -0.51 -14.12 8.20 -34.44 -0.28 -14.40 16 6 H 0.08 2.32 5.92 -52.49 -0.31 2.01 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.97 13.96 55.43 0.77 -27.20 16 9 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 C 0.07 1.13 4.65 -3.82 -0.02 1.11 16 14 N -0.69 -9.78 5.71 -113.78 -0.65 -10.43 16 15 C 0.06 0.65 5.69 -3.83 -0.02 0.63 16 16 C -0.10 -1.06 4.76 -26.73 -0.13 -1.19 16 17 C -0.14 -1.02 5.70 -27.88 -0.16 -1.18 16 18 C 0.52 4.94 7.83 -10.99 -0.09 4.85 16 19 O -0.53 -7.43 15.55 5.56 0.09 -7.35 16 20 N -0.71 -4.77 5.57 -53.81 -0.30 -5.07 16 21 C 0.08 0.54 6.43 -67.93 -0.44 0.11 16 22 C -0.19 -0.98 10.46 -26.73 -0.28 -1.26 16 23 C -0.19 -0.89 10.46 -26.73 -0.28 -1.17 16 24 H 0.05 0.83 7.60 -51.93 -0.39 0.43 16 25 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.49 6.62 -51.92 -0.34 1.14 16 29 H 0.04 0.60 6.57 -51.93 -0.34 0.26 16 30 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 31 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.34 4.76 6.77 -39.29 -0.27 4.49 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.98 8.10 -51.93 -0.42 0.55 16 39 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.40 1.53 8.83 -40.82 -0.36 1.17 16 43 H 0.14 1.18 7.40 -51.93 -0.38 0.80 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -32.80 371.63 -9.13 -41.93 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -8.59 Total: 1.47 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -1.37 Total: -16.21 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.18 Total: -42.69 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.09 Total: -7.35 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.80 -9.13 -41.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135149469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.567 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds