Wall clock time and date at job start Tue Mar 31 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 C 1.53003 * 109.47226 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47328 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47429 * 180.02562 * 5 4 3 7 7 C 1.34772 * 120.00200 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99700 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00016 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.46843 * 180.02562 * 9 7 6 11 11 C 1.36943 * 119.99797 * 263.93164 * 10 9 7 12 12 H 1.08002 * 119.99931 * 197.10447 * 11 10 9 13 13 C 1.38815 * 120.00172 * 17.10092 * 11 10 9 14 14 N 1.31618 * 119.99627 * 21.47133 * 13 11 10 15 15 Si 1.86793 * 119.99972 * 201.47014 * 13 11 10 16 16 H 1.48492 * 109.47644 * 59.99889 * 15 13 11 17 17 H 1.48502 * 109.47299 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47122 * 299.99904 * 15 13 11 19 19 C 1.46498 * 120.00012 * 83.93497 * 10 9 7 20 20 C 1.54266 * 110.03366 * 122.09021 * 19 10 9 21 21 C 1.54968 * 104.16328 * 95.75074 * 20 19 10 22 22 C 1.54889 * 102.77339 * 37.88658 * 21 20 19 23 23 C 1.53882 * 110.03053 * 239.30522 * 19 10 9 24 24 H 1.09001 * 109.47487 * 60.00327 * 1 2 3 25 25 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47344 * 300.00058 * 1 2 3 27 27 H 1.08997 * 109.47823 * 239.99724 * 2 1 3 28 28 H 1.09008 * 109.47120 * 119.99621 * 2 1 3 29 29 H 1.09003 * 109.47472 * 59.99823 * 3 2 1 30 30 H 1.09001 * 109.47528 * 299.99643 * 3 2 1 31 31 H 1.08996 * 109.46968 * 60.00024 * 4 3 2 32 32 H 1.08994 * 109.47248 * 299.99880 * 4 3 2 33 33 H 1.09005 * 109.47090 * 59.99720 * 5 4 3 34 34 H 1.09001 * 109.46959 * 300.00638 * 5 4 3 35 35 H 0.97004 * 119.99683 * 0.02562 * 6 5 4 36 36 H 1.08996 * 109.47048 * 60.00154 * 9 7 6 37 37 H 1.08994 * 109.47251 * 299.99959 * 9 7 6 38 38 H 0.97000 * 119.99701 * 180.02562 * 14 13 11 39 39 H 1.08994 * 110.01928 * 0.69770 * 19 10 9 40 40 H 1.08997 * 110.48787 * 214.40166 * 20 19 10 41 41 H 1.09000 * 110.48658 * 337.04268 * 20 19 10 42 42 H 1.08998 * 110.71972 * 279.57629 * 21 20 19 43 43 H 1.08997 * 110.92712 * 156.29479 * 21 20 19 44 44 H 1.08998 * 110.48784 * 203.40093 * 22 21 20 45 45 H 1.09005 * 110.59643 * 80.82019 * 22 21 20 46 46 H 1.09003 * 110.03102 * 359.95115 * 23 19 10 47 47 H 1.08997 * 110.02656 * 121.38299 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 7 5.5449 2.8852 0.0000 7 6 6.2187 4.0524 0.0000 8 8 5.6122 5.1027 -0.0005 9 6 7.7257 4.0524 0.0006 10 7 8.2140 5.4337 0.0011 11 6 8.5608 6.0377 -1.1780 12 1 9.1688 6.9303 -1.1691 13 6 8.1311 5.5027 -2.3846 14 7 7.0829 4.7072 -2.4157 15 14 9.0403 5.9117 -3.9642 16 1 10.4510 5.4612 -3.8543 17 1 8.3869 5.2205 -5.1047 18 1 9.0054 7.3790 -4.1897 19 6 8.3312 6.1687 1.2629 20 6 9.7854 6.6421 1.4656 21 6 9.7882 8.0973 0.9327 22 6 8.4113 8.6344 1.3963 23 6 7.4578 7.4348 1.2185 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9336 0.9286 -0.8891 32 1 3.9329 0.9289 0.8908 33 1 3.7162 3.3995 0.8895 34 1 3.7169 3.3984 -0.8904 35 1 6.0299 2.0451 0.0000 36 1 8.0894 3.5384 -0.8891 37 1 8.0887 3.5388 0.8908 38 1 6.7828 4.3331 -3.2588 39 1 8.0260 5.5335 2.0944 40 1 10.0490 6.6227 2.5230 41 1 10.4722 6.0226 0.8889 42 1 9.8614 8.1096 -0.1547 43 1 10.5981 8.6739 1.3795 44 1 8.0963 9.4683 0.7691 45 1 8.4508 8.9385 2.4423 46 1 6.9474 7.5028 0.2577 47 1 6.7287 7.4140 2.0285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151123775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:47 Heat of formation + Delta-G solvation = -40.234197 kcal Electronic energy + Delta-G solvation = -23245.066283 eV Core-core repulsion = 20041.487482 eV Total energy + Delta-G solvation = -3203.578801 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -38.46684 -37.43714 -36.09106 -33.97384 -33.37493 -30.84809 -30.49127 -27.76369 -27.49183 -26.45161 -25.19025 -22.57768 -21.49293 -21.05756 -19.84099 -19.20990 -18.91090 -16.51954 -15.85337 -15.60072 -15.45105 -14.87420 -14.52312 -14.31648 -14.05338 -13.67413 -13.35151 -13.05053 -12.90052 -12.71862 -12.58019 -12.08772 -11.92219 -11.52683 -11.21117 -11.12684 -11.06565 -10.86379 -10.74368 -10.65922 -10.58475 -10.49049 -10.30811 -10.25331 -10.17479 -10.04098 -9.83835 -9.54859 -9.40113 -8.64868 -8.15730 -7.91773 -6.70596 -5.71197 -3.02347 3.43598 3.49582 3.50543 4.20860 4.39714 4.61081 4.86308 4.87656 5.04717 5.27130 5.38197 5.39651 5.40540 5.53960 5.61684 5.64780 5.70765 5.71557 5.82150 5.87044 5.96474 6.01809 6.11391 6.21400 6.22764 6.33266 6.38440 6.40985 6.47543 6.50502 6.54160 6.64396 6.67745 6.74292 6.86162 6.96350 6.98172 7.16475 7.27079 7.54006 7.60936 7.96431 8.41277 8.75893 9.26736 9.81696 9.98601 10.40497 11.38179 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.004238 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.676045 B = 6604.905574 C = 7676.713020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.117 4.117 4 C -0.128 4.128 5 C 0.129 3.871 6 N -0.753 5.753 7 C 0.524 3.476 8 O -0.528 6.528 9 C 0.163 3.837 10 N -0.564 5.564 11 C -0.241 4.241 12 H 0.082 0.918 13 C -0.003 4.003 14 N -0.897 5.897 15 Si 0.898 3.102 16 H -0.286 1.286 17 H -0.294 1.294 18 H -0.286 1.286 19 C 0.175 3.825 20 C -0.132 4.132 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.127 4.127 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.385 0.615 36 H 0.100 0.900 37 H 0.032 0.968 38 H 0.250 0.750 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.085 0.915 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 -7.261 7.094 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.166 4.166 5 C 0.004 3.996 6 N -0.409 5.409 7 C 0.310 3.690 8 O -0.401 6.401 9 C 0.032 3.968 10 N -0.283 5.283 11 C -0.371 4.371 12 H 0.099 0.901 13 C -0.200 4.200 14 N -0.542 5.542 15 Si 0.729 3.271 16 H -0.213 1.213 17 H -0.220 1.220 18 H -0.212 1.212 19 C 0.067 3.933 20 C -0.171 4.171 21 C -0.158 4.158 22 C -0.159 4.159 23 C -0.167 4.167 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.216 0.784 36 H 0.118 0.882 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.888 -6.499 6.937 10.689 hybrid contribution 0.300 -0.201 -1.132 1.188 sum -4.588 -6.700 5.805 9.982 Atomic orbital electron populations 1.21780 0.96117 1.01301 1.01837 1.21529 0.95634 0.97103 1.01889 1.21536 0.95109 0.96539 1.02356 1.21789 0.95574 0.97166 1.02106 1.21013 0.82502 0.95090 1.01013 1.46234 1.05421 1.09274 1.79930 1.22100 0.91868 0.82323 0.72704 1.90500 1.70132 1.31499 1.47967 1.20581 0.88887 0.87583 0.99731 1.44002 1.73232 1.08806 1.02218 1.19268 1.24626 1.10314 0.82853 0.90090 1.24807 0.96639 1.01089 0.97501 1.69936 1.22325 1.36993 1.24956 0.86418 0.79490 0.77773 0.83459 1.21321 1.21999 1.21233 1.20920 0.92158 0.92101 0.88123 1.22782 0.99362 0.96422 0.98523 1.22531 0.95860 0.95984 1.01415 1.22301 0.96361 0.98223 0.99010 1.22584 0.97364 0.94300 1.02404 0.92748 0.93023 0.92814 0.92084 0.92168 0.91936 0.91779 0.91656 0.91922 0.93284 0.92639 0.78371 0.88190 0.94958 0.93929 0.93548 0.93400 0.91229 0.90733 0.93613 0.93023 0.93372 0.89603 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.15 0.37 -0.92 16 2 C -0.12 -1.15 5.93 -26.74 -0.16 -1.31 16 3 C -0.12 -1.29 5.21 -26.73 -0.14 -1.42 16 4 C -0.13 -1.59 5.33 -26.73 -0.14 -1.73 16 5 C 0.13 2.17 5.67 -4.04 -0.02 2.15 16 6 N -0.75 -14.09 5.56 -60.29 -0.33 -14.42 16 7 C 0.52 12.23 6.03 -10.99 -0.07 12.17 16 8 O -0.53 -14.56 16.07 5.55 0.09 -14.47 16 9 C 0.16 3.71 5.32 -5.19 -0.03 3.69 16 10 N -0.56 -13.66 1.91 -165.75 -0.32 -13.97 16 11 C -0.24 -6.38 8.19 -15.06 -0.12 -6.50 16 12 H 0.08 2.11 5.09 -52.49 -0.27 1.85 16 13 C 0.00 -0.08 4.87 -17.43 -0.08 -0.16 16 14 N -0.90 -25.20 9.27 55.49 0.51 -24.68 16 15 Si 0.90 21.75 29.60 -169.99 -5.03 16.72 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 C 0.17 3.71 3.42 -66.81 -0.23 3.48 16 20 C -0.13 -2.43 6.08 -25.03 -0.15 -2.58 16 21 C -0.12 -2.16 6.51 -24.70 -0.16 -2.32 16 22 C -0.12 -2.19 6.83 -25.07 -0.17 -2.36 16 23 C -0.13 -2.72 6.25 -25.61 -0.16 -2.88 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.38 6.06 8.47 -40.82 -0.35 5.71 16 36 H 0.10 2.44 6.39 -51.93 -0.33 2.11 16 37 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 38 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.05 0.95 7.90 -51.93 -0.41 0.54 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.35 7.97 -51.93 -0.41 0.94 16 42 H 0.07 1.48 5.89 -51.93 -0.31 1.17 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 2.22 7.34 -51.93 -0.38 1.84 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -30.73 364.99 -9.62 -40.36 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -8.77 Total: 5.67 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.27 Total: -0.70 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.14 Total: -53.08 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.09 Total: -14.47 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.73 -9.62 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151123775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.122 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds