Wall clock time and date at job start Tue Mar 31 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.46984 * 2 1 4 4 C 1.53003 * 109.47226 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47328 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47429 * 180.02562 * 5 4 3 7 7 C 1.34772 * 120.00200 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99700 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00016 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.46843 * 180.02562 * 9 7 6 11 11 C 1.36943 * 119.99797 * 263.93164 * 10 9 7 12 12 H 1.08002 * 119.99931 * 197.10447 * 11 10 9 13 13 C 1.38815 * 120.00172 * 17.10092 * 11 10 9 14 14 N 1.31618 * 119.99627 * 21.47133 * 13 11 10 15 15 Si 1.86793 * 119.99972 * 201.47014 * 13 11 10 16 16 H 1.48492 * 109.47644 * 59.99889 * 15 13 11 17 17 H 1.48502 * 109.47299 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47122 * 299.99904 * 15 13 11 19 19 C 1.46498 * 120.00012 * 83.93497 * 10 9 7 20 20 C 1.54266 * 110.03366 * 122.09021 * 19 10 9 21 21 C 1.54968 * 104.16328 * 95.75074 * 20 19 10 22 22 C 1.54889 * 102.77339 * 37.88658 * 21 20 19 23 23 C 1.53882 * 110.03053 * 239.30522 * 19 10 9 24 24 H 1.09001 * 109.47487 * 60.00327 * 1 2 3 25 25 H 1.08999 * 109.46743 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47344 * 300.00058 * 1 2 3 27 27 H 1.08997 * 109.47823 * 239.99724 * 2 1 3 28 28 H 1.09008 * 109.47120 * 119.99621 * 2 1 3 29 29 H 1.09003 * 109.47472 * 59.99823 * 3 2 1 30 30 H 1.09001 * 109.47528 * 299.99643 * 3 2 1 31 31 H 1.08996 * 109.46968 * 60.00024 * 4 3 2 32 32 H 1.08994 * 109.47248 * 299.99880 * 4 3 2 33 33 H 1.09005 * 109.47090 * 59.99720 * 5 4 3 34 34 H 1.09001 * 109.46959 * 300.00638 * 5 4 3 35 35 H 0.97004 * 119.99683 * 0.02562 * 6 5 4 36 36 H 1.08996 * 109.47048 * 60.00154 * 9 7 6 37 37 H 1.08994 * 109.47251 * 299.99959 * 9 7 6 38 38 H 0.97000 * 119.99701 * 180.02562 * 14 13 11 39 39 H 1.08994 * 110.01928 * 0.69770 * 19 10 9 40 40 H 1.08997 * 110.48787 * 214.40166 * 20 19 10 41 41 H 1.09000 * 110.48658 * 337.04268 * 20 19 10 42 42 H 1.08998 * 110.71972 * 279.57629 * 21 20 19 43 43 H 1.08997 * 110.92712 * 156.29479 * 21 20 19 44 44 H 1.08998 * 110.48784 * 203.40093 * 22 21 20 45 45 H 1.09005 * 110.59643 * 80.82019 * 22 21 20 46 46 H 1.09003 * 110.03102 * 359.95115 * 23 19 10 47 47 H 1.08997 * 110.02656 * 121.38299 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 7 5.5449 2.8852 0.0000 7 6 6.2187 4.0524 0.0000 8 8 5.6122 5.1027 -0.0005 9 6 7.7257 4.0524 0.0006 10 7 8.2140 5.4337 0.0011 11 6 8.5608 6.0377 -1.1780 12 1 9.1688 6.9303 -1.1691 13 6 8.1311 5.5027 -2.3846 14 7 7.0829 4.7072 -2.4157 15 14 9.0403 5.9117 -3.9642 16 1 10.4510 5.4612 -3.8543 17 1 8.3869 5.2205 -5.1047 18 1 9.0054 7.3790 -4.1897 19 6 8.3312 6.1687 1.2629 20 6 9.7854 6.6421 1.4656 21 6 9.7882 8.0973 0.9327 22 6 8.4113 8.6344 1.3963 23 6 7.4578 7.4348 1.2185 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6765 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9336 0.9286 -0.8891 32 1 3.9329 0.9289 0.8908 33 1 3.7162 3.3995 0.8895 34 1 3.7169 3.3984 -0.8904 35 1 6.0299 2.0451 0.0000 36 1 8.0894 3.5384 -0.8891 37 1 8.0887 3.5388 0.8908 38 1 6.7828 4.3331 -3.2588 39 1 8.0260 5.5335 2.0944 40 1 10.0490 6.6227 2.5230 41 1 10.4722 6.0226 0.8889 42 1 9.8614 8.1096 -0.1547 43 1 10.5981 8.6739 1.3795 44 1 8.0963 9.4683 0.7691 45 1 8.4508 8.9385 2.4423 46 1 6.9474 7.5028 0.2577 47 1 6.7287 7.4140 2.0285 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000151123775.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:46 Heat of formation + Delta-G solvation = -57.739296 kcal Electronic energy + Delta-G solvation = -23245.825361 eV Core-core repulsion = 20041.487482 eV Total energy + Delta-G solvation = -3204.337879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.23237 -39.05606 -37.22929 -35.67458 -34.90796 -32.77223 -31.71253 -29.32677 -29.06426 -28.22042 -26.50151 -24.30300 -22.67868 -22.03781 -21.34321 -20.88172 -20.67624 -18.38477 -17.35851 -17.24693 -16.83412 -16.47384 -16.14844 -15.91140 -15.59205 -14.88961 -14.82416 -14.36345 -14.31290 -14.26508 -13.94737 -13.70614 -13.22131 -13.12681 -12.78252 -12.53510 -12.52846 -12.36591 -12.11478 -11.99890 -11.96945 -11.83452 -11.77155 -11.70547 -11.64682 -11.46620 -11.39245 -11.32902 -11.11082 -10.58711 -10.13393 -9.60087 -8.63235 -7.76213 -5.07058 1.48962 1.49951 1.56035 2.48841 2.57844 2.83081 3.39054 3.65362 3.89833 3.99846 4.01427 4.06422 4.17192 4.32047 4.34150 4.44006 4.59369 4.65929 4.70959 4.74613 4.78883 4.85706 4.87185 4.96307 4.97459 5.01975 5.05883 5.10919 5.14870 5.19503 5.21453 5.29134 5.30638 5.31974 5.35024 5.44622 5.50136 5.51287 5.65165 5.81889 5.92197 6.02156 6.43713 7.08787 7.28180 7.94368 8.13508 8.41768 9.30527 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.004238 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.676045 B = 6604.905574 C = 7676.713020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.116 4.116 4 C -0.114 4.114 5 C 0.132 3.868 6 N -0.740 5.740 7 C 0.521 3.479 8 O -0.578 6.578 9 C 0.161 3.839 10 N -0.577 5.577 11 C -0.236 4.236 12 H 0.082 0.918 13 C -0.056 4.056 14 N -0.919 5.919 15 Si 0.954 3.046 16 H -0.276 1.276 17 H -0.303 1.303 18 H -0.290 1.290 19 C 0.164 3.836 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.123 4.123 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.022 0.978 35 H 0.402 0.598 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.239 0.761 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.049 0.951 45 H 0.079 0.921 46 H 0.031 0.969 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 -8.009 8.775 12.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.154 4.154 4 C -0.151 4.151 5 C 0.007 3.993 6 N -0.395 5.395 7 C 0.308 3.692 8 O -0.456 6.456 9 C 0.031 3.969 10 N -0.296 5.296 11 C -0.366 4.366 12 H 0.099 0.901 13 C -0.250 4.250 14 N -0.566 5.566 15 Si 0.784 3.216 16 H -0.202 1.202 17 H -0.230 1.230 18 H -0.217 1.217 19 C 0.058 3.942 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.162 4.162 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.040 0.960 35 H 0.236 0.764 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.050 0.950 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.858 -7.289 8.641 11.945 hybrid contribution -0.056 0.047 -1.578 1.579 sum -3.914 -7.243 7.064 10.848 Atomic orbital electron populations 1.21783 0.95451 1.02077 1.01771 1.21497 0.96220 0.95579 1.02475 1.21528 0.93949 0.97968 1.01957 1.21693 0.96479 0.93754 1.03209 1.21058 0.81205 0.97987 0.99037 1.46034 1.06386 1.08892 1.78156 1.22210 0.92315 0.82649 0.71989 1.90477 1.71063 1.33488 1.50531 1.20631 0.88600 0.87346 1.00334 1.44219 1.73238 1.09496 1.02605 1.19520 1.23436 1.09802 0.83842 0.90087 1.25419 0.97575 1.02144 0.99893 1.70110 1.23590 1.38508 1.24419 0.85534 0.78766 0.76933 0.80335 1.20249 1.22977 1.21664 1.21190 0.94093 0.91870 0.87085 1.22687 0.96672 0.96222 1.00426 1.22494 0.96797 0.96207 0.99988 1.22271 0.95324 0.96545 1.00955 1.22451 0.97910 0.96479 0.99388 0.93139 0.91830 0.92631 0.91903 0.91154 0.91807 0.92860 0.91323 0.89887 0.93995 0.95962 0.76393 0.89961 0.91567 0.95169 0.92811 0.90077 0.92303 0.93373 0.90200 0.93214 0.90208 0.95005 0.94040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.12 -2.01 5.93 30.59 0.18 -1.83 16 3 C -0.12 -2.43 5.21 30.59 0.16 -2.27 16 4 C -0.11 -2.68 5.33 30.60 0.16 -2.51 16 5 C 0.13 4.52 5.67 86.38 0.49 5.01 16 6 N -0.74 -27.79 5.56 -463.06 -2.57 -30.36 16 7 C 0.52 24.84 6.03 87.66 0.53 25.36 16 8 O -0.58 -33.12 16.07 -3.04 -0.05 -33.17 16 9 C 0.16 7.38 5.32 85.63 0.46 7.84 16 10 N -0.58 -28.11 1.91 -678.32 -1.30 -29.41 16 11 C -0.24 -12.65 8.19 84.03 0.69 -11.96 16 12 H 0.08 4.28 5.09 -2.91 -0.01 4.26 16 13 C -0.06 -3.10 4.87 84.86 0.41 -2.68 16 14 N -0.92 -53.31 9.27 21.65 0.20 -53.11 16 15 Si 0.95 45.76 29.60 68.60 2.03 47.79 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 18 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 19 C 0.16 6.84 3.42 45.72 0.16 6.99 16 20 C -0.12 -4.16 6.08 31.70 0.19 -3.97 16 21 C -0.12 -3.93 6.51 31.91 0.21 -3.72 16 22 C -0.11 -3.87 6.83 31.67 0.22 -3.65 16 23 C -0.12 -5.25 6.25 31.32 0.20 -5.06 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.40 12.30 8.47 -92.71 -0.79 11.51 16 36 H 0.08 4.07 6.39 -2.39 -0.02 4.05 16 37 H 0.07 2.53 8.06 -2.39 -0.02 2.51 16 38 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.05 2.12 7.90 -2.39 -0.02 2.10 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.06 2.16 7.97 -2.39 -0.02 2.14 16 42 H 0.05 1.86 5.89 -2.39 -0.01 1.85 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 45 H 0.08 2.25 8.14 -2.38 -0.02 2.24 16 46 H 0.03 1.69 7.34 -2.39 -0.02 1.67 16 47 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -69.09 364.99 3.21 -65.88 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.13 Total: 26.44 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 4.76 Total: 5.94 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -3.67 Total: -112.87 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.05 Total: -33.17 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -69.09 3.21 -65.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151123775.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.137 kcal (2) G-P(sol) polarization free energy of solvation -69.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds