Wall clock time and date at job start Tue Mar 31 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.46827 * 2 1 4 4 C 1.53008 * 109.47256 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47406 * 180.02562 * 4 3 2 6 6 C 1.34774 * 119.99998 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99704 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99959 * 180.02562 * 6 5 4 9 9 C 1.53003 * 109.46937 * 179.97438 * 8 6 5 10 10 N 1.46496 * 109.46976 * 179.97438 * 9 8 6 11 11 C 1.36936 * 120.00267 * 269.99864 * 10 9 8 12 12 H 1.07993 * 120.00440 * 141.59966 * 11 10 9 13 13 C 1.38812 * 119.99834 * 321.59987 * 11 10 9 14 14 N 1.31619 * 120.00247 * 339.26534 * 13 11 10 15 15 Si 1.86804 * 120.00120 * 159.26316 * 13 11 10 16 16 H 1.48492 * 109.47036 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47079 * 120.00198 * 15 13 11 18 18 H 1.48500 * 109.46957 * 240.00175 * 15 13 11 19 19 C 1.46503 * 120.00137 * 89.99907 * 10 9 8 20 20 C 1.54268 * 110.03198 * 242.54986 * 19 10 9 21 21 C 1.54969 * 104.15905 * 217.13495 * 20 19 10 22 22 C 1.54888 * 102.77420 * 37.88778 * 21 20 19 23 23 C 1.53873 * 110.03241 * 125.32932 * 19 10 9 24 24 H 1.08995 * 109.47269 * 299.99640 * 1 2 3 25 25 H 1.09000 * 109.46829 * 60.00239 * 1 2 3 26 26 H 1.09004 * 109.46807 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47178 * 239.99828 * 2 1 3 28 28 H 1.09006 * 109.46669 * 120.00166 * 2 1 3 29 29 H 1.09004 * 109.47423 * 60.00358 * 3 2 1 30 30 H 1.08998 * 109.47945 * 299.99672 * 3 2 1 31 31 H 1.09004 * 109.46395 * 59.99995 * 4 3 2 32 32 H 1.08998 * 109.46593 * 300.00766 * 4 3 2 33 33 H 0.97000 * 119.99863 * 0.02562 * 5 4 3 34 34 H 1.08995 * 109.47141 * 59.99689 * 8 6 5 35 35 H 1.09000 * 109.46872 * 299.99143 * 8 6 5 36 36 H 1.08997 * 109.47178 * 59.99468 * 9 8 6 37 37 H 1.09000 * 109.46829 * 299.99401 * 9 8 6 38 38 H 0.97003 * 120.00565 * 175.02978 * 14 13 11 39 39 H 1.09006 * 110.01510 * 3.94094 * 19 10 9 40 40 H 1.08996 * 110.48485 * 335.77996 * 20 19 10 41 41 H 1.08997 * 110.48720 * 98.42404 * 20 19 10 42 42 H 1.08996 * 110.71765 * 279.57733 * 21 20 19 43 43 H 1.08998 * 110.92233 * 156.29192 * 21 20 19 44 44 H 1.09008 * 110.48728 * 203.40565 * 22 21 20 45 45 H 1.08997 * 110.60540 * 80.82018 * 22 21 20 46 46 H 1.09001 * 110.03409 * 238.57218 * 23 19 10 47 47 H 1.08999 * 110.03098 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8237 0.0013 6 6 5.3833 3.0700 0.0014 7 8 6.1714 2.1482 0.0014 8 6 5.8856 4.4909 0.0026 9 6 7.4157 4.4909 0.0031 10 7 7.9039 5.8721 0.0037 11 6 8.1326 6.5180 -1.1819 12 1 7.8865 7.5646 -1.2829 13 6 8.6807 5.8274 -2.2540 14 7 9.3486 4.7124 -2.0465 15 14 8.4705 6.4804 -3.9916 16 1 7.6860 7.7407 -3.9551 17 1 9.8054 6.7459 -4.5855 18 1 7.7535 5.4741 -4.8152 19 6 8.1477 6.5624 1.2727 20 6 7.2159 7.7857 1.3963 21 6 8.0896 8.8587 2.0940 22 6 9.4833 8.6325 1.4573 23 6 9.5888 7.1003 1.3118 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9336 0.9286 -0.8892 32 1 3.9329 0.9288 0.8908 33 1 3.4279 3.5610 0.0016 34 1 5.5223 5.0039 0.8930 35 1 5.5223 5.0054 -0.8870 36 1 7.7793 3.9776 -0.8871 37 1 7.7786 3.9765 0.8929 38 1 9.6696 4.1918 -2.7994 39 1 7.9810 5.8803 2.1065 40 1 6.9050 8.1295 0.4098 41 1 6.3471 7.5432 2.0081 42 1 8.1242 8.6879 3.1699 43 1 7.7231 9.8616 1.8750 44 1 10.2682 9.0083 2.1137 45 1 9.5415 9.1133 0.4808 46 1 10.1212 6.6800 2.1650 47 1 10.1067 6.8482 0.3865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156612967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:42 Heat of formation + Delta-G solvation = -52.349475 kcal Electronic energy + Delta-G solvation = -22748.405149 eV Core-core repulsion = 19544.300991 eV Total energy + Delta-G solvation = -3204.104159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.21678 -37.65691 -36.17212 -34.39420 -33.52976 -31.43816 -30.05279 -28.62219 -27.78533 -26.40904 -24.63976 -23.20597 -21.45542 -21.24296 -19.97520 -19.53519 -18.97095 -16.63712 -16.02632 -15.97452 -15.56215 -15.25329 -14.88525 -14.58734 -14.18417 -13.86915 -13.54454 -13.41736 -13.01082 -12.73908 -12.52176 -12.43072 -12.10597 -11.70945 -11.51255 -11.35372 -11.29360 -11.04460 -10.92491 -10.84355 -10.64200 -10.50323 -10.38949 -10.24423 -10.15700 -10.07829 -9.65064 -9.56096 -9.43749 -9.20616 -8.76710 -8.38086 -6.50768 -5.67135 -3.33192 3.23332 3.38147 3.47777 3.49056 3.54613 4.53133 4.66462 4.71065 4.83694 5.17709 5.22699 5.33935 5.38485 5.44760 5.46724 5.52959 5.55621 5.62236 5.69481 5.78310 5.84919 5.94094 6.04086 6.09145 6.12546 6.21257 6.23696 6.29601 6.34087 6.46962 6.59010 6.62336 6.67052 6.73743 6.75411 6.90304 7.07319 7.13347 7.23697 7.47283 7.85420 7.87685 7.94188 8.59961 8.75130 9.27403 9.89794 10.48570 11.27916 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.003987 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.953512 B = 7020.881780 C = 8093.416102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.118 3.882 5 N -0.744 5.744 6 C 0.514 3.486 7 O -0.538 6.538 8 C -0.155 4.155 9 C 0.163 3.837 10 N -0.578 5.578 11 C -0.253 4.253 12 H 0.061 0.939 13 C 0.014 3.986 14 N -0.878 5.878 15 Si 0.887 3.113 16 H -0.276 1.276 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.168 3.832 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.131 4.131 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.397 0.603 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.029 0.971 38 H 0.253 0.747 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.061 0.939 46 H 0.039 0.961 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 -1.950 6.226 15.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.169 4.169 4 C -0.006 4.006 5 N -0.398 5.398 6 C 0.301 3.699 7 O -0.414 6.414 8 C -0.197 4.197 9 C 0.036 3.964 10 N -0.296 5.296 11 C -0.383 4.383 12 H 0.079 0.921 13 C -0.187 4.187 14 N -0.519 5.519 15 Si 0.716 3.284 16 H -0.201 1.201 17 H -0.217 1.217 18 H -0.216 1.216 19 C 0.061 3.939 20 C -0.175 4.175 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.230 0.770 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.923 -2.724 6.114 14.553 hybrid contribution -0.552 0.605 -0.973 1.272 sum -13.475 -2.119 5.141 14.577 Atomic orbital electron populations 1.21767 0.95687 1.01634 1.01830 1.21442 0.95899 0.96197 1.02515 1.21825 0.94668 0.97763 1.02623 1.21276 0.93145 0.84154 1.02051 1.46226 1.07816 1.08020 1.77760 1.21362 0.81225 0.92856 0.74440 1.90670 1.55196 1.46987 1.48568 1.22471 1.03650 0.90716 1.02891 1.20664 0.86481 0.86502 1.02764 1.43978 1.73705 1.11342 1.00604 1.18915 1.34911 0.95646 0.88841 0.92137 1.25190 0.96189 0.98313 0.99016 1.70082 1.35211 1.16705 1.29934 0.86494 0.77510 0.78532 0.85842 1.20133 1.21717 1.21602 1.21073 0.91879 0.92150 0.88794 1.22867 0.97572 0.96835 1.00178 1.22437 0.96574 0.98293 0.98775 1.22254 0.95785 0.97736 0.99742 1.22537 0.99089 0.93612 1.01778 0.92739 0.92713 0.92719 0.91664 0.91708 0.91437 0.91369 0.91918 0.91993 0.76979 0.90908 0.89346 0.88218 0.95248 0.93689 0.93558 0.90828 0.93673 0.92763 0.93011 0.93515 0.92022 0.94169 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.13 -1.16 5.33 -26.73 -0.14 -1.30 16 4 C 0.12 1.46 5.67 -4.04 -0.02 1.44 16 5 N -0.74 -10.41 5.56 -60.29 -0.33 -10.75 16 6 C 0.51 9.63 7.83 -10.99 -0.09 9.55 16 7 O -0.54 -12.35 15.98 5.56 0.09 -12.26 16 8 C -0.15 -2.97 6.02 -27.88 -0.17 -3.14 16 9 C 0.16 3.89 4.57 -4.04 -0.02 3.87 16 10 N -0.58 -13.81 2.38 -164.39 -0.39 -14.20 16 11 C -0.25 -6.58 7.75 -15.06 -0.12 -6.70 16 12 H 0.06 1.58 6.94 -52.49 -0.36 1.22 16 13 C 0.01 0.38 4.96 -17.43 -0.09 0.29 16 14 N -0.88 -25.41 11.48 55.49 0.64 -24.77 16 15 Si 0.89 21.32 29.61 -169.99 -5.03 16.29 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 C 0.17 3.49 3.42 -66.81 -0.23 3.26 16 20 C -0.13 -2.43 6.43 -25.03 -0.16 -2.59 16 21 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 22 C -0.12 -2.04 6.83 -25.07 -0.17 -2.21 16 23 C -0.13 -2.67 6.25 -25.61 -0.16 -2.83 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.40 4.39 8.47 -40.82 -0.35 4.05 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 36 H 0.10 2.79 5.51 -51.93 -0.29 2.50 16 37 H 0.03 0.71 7.86 -51.93 -0.41 0.31 16 38 H 0.25 7.15 8.32 -40.82 -0.34 6.82 16 39 H 0.05 0.94 7.81 -51.93 -0.41 0.53 16 40 H 0.07 1.46 6.64 -51.93 -0.34 1.11 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 2.09 7.16 -51.93 -0.37 1.72 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -30.36 371.28 -9.61 -39.97 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.85 Total: 4.40 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -1.32 Total: -4.28 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.09 Total: -49.72 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.36 -9.61 -39.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156612967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.379 kcal (2) G-P(sol) polarization free energy of solvation -30.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds