Wall clock time and date at job start Tue Mar 31 2020 05:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 C 1.52998 * 109.47214 * 240.00100 * 2 1 3 5 5 C 1.53001 * 109.47214 * 119.99749 * 2 1 3 6 6 N 1.46900 * 109.46858 * 83.70891 * 5 2 1 7 7 C 1.46892 * 111.00363 * 78.74342 * 6 5 2 8 8 C 1.50708 * 109.47072 * 75.60362 * 7 6 5 9 9 H 1.08002 * 119.99490 * 355.16122 * 8 7 6 10 10 C 1.37876 * 119.99966 * 175.15560 * 8 7 6 11 11 N 1.31514 * 120.00209 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99721 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47261 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47058 * 119.99985 * 12 10 8 15 15 H 1.48498 * 109.47088 * 240.00205 * 12 10 8 16 16 C 1.46907 * 111.00102 * 314.79145 * 6 5 2 17 17 C 1.50708 * 109.47022 * 285.48973 * 16 6 5 18 18 O 1.21280 * 119.99900 * 359.97438 * 17 16 6 19 19 N 1.34773 * 119.99949 * 179.72261 * 17 16 6 20 20 C 1.47026 * 125.64857 * 359.96336 * 19 17 16 21 21 C 1.54304 * 107.27558 * 180.96815 * 20 19 17 22 22 C 1.55160 * 102.86620 * 22.52930 * 21 20 19 23 23 C 1.47416 * 125.64746 * 180.27947 * 19 17 16 24 24 H 1.09000 * 109.46706 * 303.78870 * 1 2 3 25 25 H 1.09003 * 109.46814 * 63.78372 * 1 2 3 26 26 H 1.08993 * 109.47240 * 183.78642 * 1 2 3 27 27 H 1.09005 * 109.46908 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47223 * 300.00000 * 3 2 1 29 29 H 1.09002 * 109.47316 * 60.00392 * 3 2 1 30 30 H 1.08998 * 109.47225 * 290.20204 * 4 2 1 31 31 H 1.09000 * 109.47011 * 50.20202 * 4 2 1 32 32 H 1.09006 * 109.47266 * 170.20342 * 4 2 1 33 33 H 1.08998 * 109.47238 * 323.70965 * 5 2 1 34 34 H 1.09001 * 109.47358 * 203.70334 * 5 2 1 35 35 H 1.09001 * 109.47407 * 195.60329 * 7 6 5 36 36 H 1.09002 * 109.47496 * 315.60637 * 7 6 5 37 37 H 0.96999 * 119.99744 * 179.97438 * 11 10 8 38 38 H 1.08995 * 109.47542 * 165.48630 * 16 6 5 39 39 H 1.09005 * 109.46964 * 45.48545 * 16 6 5 40 40 H 1.09000 * 109.88344 * 300.51522 * 20 19 17 41 41 H 1.09003 * 109.88081 * 61.67877 * 20 19 17 42 42 H 1.08996 * 110.92969 * 264.11558 * 21 20 19 43 43 H 1.09004 * 110.59097 * 140.78675 * 21 20 19 44 44 H 1.08998 * 111.00599 * 206.22489 * 22 21 20 45 45 H 1.09004 * 111.00552 * 82.37369 * 22 21 20 46 46 H 1.09003 * 110.36434 * 274.67030 * 23 19 17 47 47 H 1.08993 * 110.37173 * 36.88342 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 2.0601 -2.1695 1.0046 7 6 3.2344 -2.5529 0.2097 8 6 4.4617 -2.5317 1.0841 9 1 4.3915 -2.1858 2.1048 10 6 5.6739 -2.9541 0.5810 11 7 5.7594 -3.3749 -0.6620 12 14 7.1949 -2.9284 1.6652 13 1 6.8349 -2.4148 3.0111 14 1 7.7377 -4.3051 1.7891 15 1 8.2215 -2.0444 1.0569 16 6 0.8183 -2.6112 0.3558 17 6 -0.3002 -2.6206 1.3658 18 8 -0.0840 -2.2923 2.5131 19 7 -1.5418 -2.9891 0.9928 20 6 -1.9429 -3.4025 -0.3599 21 6 -3.4552 -3.7062 -0.3167 22 6 -3.9351 -2.8964 0.9167 23 6 -2.7240 -3.0380 1.8721 24 1 -0.3633 0.5715 0.8541 25 1 -0.3633 0.4540 -0.9220 26 1 -0.3633 -1.0253 0.0679 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.8266 -1.7869 -1.1662 31 1 1.5410 -0.3183 -2.1306 32 1 3.1159 -0.5723 -1.3410 33 1 1.3802 -0.5038 2.0892 34 1 3.0483 -0.3779 1.4809 35 1 3.0905 -3.5567 -0.1903 36 1 3.3621 -1.8490 -0.6127 37 1 6.6124 -3.6717 -1.0160 38 1 0.9548 -3.6157 -0.0446 39 1 0.5693 -1.9273 -0.4557 40 1 -1.7446 -2.5976 -1.0676 41 1 -1.3950 -4.2986 -0.6514 42 1 -3.6344 -4.7716 -0.1719 43 1 -3.9435 -3.3518 -1.2245 44 1 -4.8302 -3.3409 1.3518 45 1 -4.1068 -1.8520 0.6557 46 1 -2.7658 -3.9914 2.3988 47 1 -2.7018 -2.2129 2.5840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157246574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:52 Heat of formation + Delta-G solvation = 21.960384 kcal Electronic energy + Delta-G solvation = -24409.264341 eV Core-core repulsion = 21208.382500 eV Total energy + Delta-G solvation = -3200.881841 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47576 -38.77621 -36.83207 -33.84263 -32.31090 -31.69693 -29.44272 -28.41550 -27.69415 -26.52651 -26.21341 -24.17521 -22.94417 -21.33478 -20.50170 -19.09497 -18.34819 -17.05295 -16.59454 -16.23573 -15.53636 -14.91990 -14.73242 -14.26916 -14.01065 -13.82187 -13.63679 -13.42775 -13.04105 -12.84522 -12.69425 -12.28976 -12.09975 -12.01858 -11.52924 -11.36518 -11.35670 -11.25871 -11.18999 -11.05469 -10.92269 -10.86478 -10.67479 -10.53098 -10.26123 -10.03427 -9.77095 -9.70623 -9.34143 -8.98120 -8.46925 -8.33169 -6.92696 -5.95117 -3.93497 3.08178 3.14720 3.35922 3.43462 3.50416 4.36270 4.45294 4.50600 4.71984 5.00844 5.12270 5.18927 5.22435 5.24981 5.27899 5.37377 5.41590 5.51782 5.53408 5.65641 5.70623 5.77250 5.82562 5.89345 5.91509 5.95173 5.97671 6.02890 6.08142 6.20171 6.28978 6.35967 6.41167 6.47975 6.60487 6.75589 6.86564 6.97527 7.27460 7.45834 7.70157 7.91744 8.16016 8.30817 8.59088 8.68782 9.13669 9.68792 11.14947 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020302 B = 0.004974 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.821369 B = 5627.630872 C = 6154.368782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.104 4.104 3 C -0.133 4.133 4 C -0.163 4.163 5 C 0.072 3.928 6 N -0.512 5.512 7 C 0.158 3.842 8 C -0.496 4.496 9 H 0.062 0.938 10 C 0.054 3.946 11 N -0.903 5.903 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.286 1.286 16 C 0.005 3.995 17 C 0.532 3.468 18 O -0.517 6.517 19 N -0.632 5.632 20 C 0.099 3.901 21 C -0.131 4.131 22 C -0.134 4.134 23 C 0.106 3.894 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.026 0.974 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.496 3.073 -3.118 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.105 4.105 3 C -0.191 4.191 4 C -0.219 4.219 5 C -0.057 4.057 6 N -0.235 5.235 7 C 0.034 3.966 8 C -0.535 4.535 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.543 5.543 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.213 1.213 16 C -0.125 4.125 17 C 0.321 3.679 18 O -0.391 6.391 19 N -0.370 5.370 20 C -0.025 4.025 21 C -0.169 4.169 22 C -0.172 4.172 23 C -0.017 4.017 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.044 0.956 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.071 2.955 -2.107 18.432 hybrid contribution 0.799 0.207 -0.338 0.892 sum -17.272 3.162 -2.445 17.729 Atomic orbital electron populations 1.22538 0.95785 1.02480 1.00850 1.21238 0.94887 0.96410 0.98003 1.21791 1.01333 0.95313 1.00623 1.22780 1.02027 1.01424 0.95664 1.22243 1.01819 0.87011 0.94631 1.61948 1.00390 1.13026 1.48114 1.20647 0.85952 0.96574 0.93413 1.21244 0.91972 1.41564 0.98671 0.91984 1.24927 0.98894 0.95724 0.95105 1.69954 1.25300 1.44841 1.14230 0.86496 0.82900 0.77515 0.80869 1.19682 1.21173 1.21252 1.22944 0.91531 1.02845 0.95214 1.20778 0.81571 0.75647 0.89858 1.90659 1.81685 1.46476 1.20239 1.48684 1.08551 1.69093 1.10715 1.22010 0.95521 1.00079 0.84879 1.22624 0.94426 1.00899 0.98946 1.22782 0.97513 1.00962 0.95910 1.22117 0.84104 1.01881 0.93571 0.93102 0.93489 0.91136 0.92256 0.93531 0.93154 0.90280 0.94349 0.90613 0.91503 0.90094 0.95636 0.94737 0.93187 0.89429 0.88653 0.91506 0.91312 0.90546 0.90148 0.90086 0.90721 0.91915 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 7.63 37.16 0.28 -2.08 16 2 C -0.10 -1.74 0.77 -154.51 -0.12 -1.86 16 3 C -0.13 -2.01 8.34 37.16 0.31 -1.70 16 4 C -0.16 -2.84 6.24 37.16 0.23 -2.61 16 5 C 0.07 1.47 4.68 -3.82 -0.02 1.45 16 6 N -0.51 -11.43 4.21 -237.51 -1.00 -12.43 16 7 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 8 C -0.50 -14.09 8.53 -34.44 -0.29 -14.38 16 9 H 0.06 1.81 7.74 -52.49 -0.41 1.41 16 10 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 11 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 12 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 C 0.01 0.10 3.19 -4.97 -0.02 0.08 16 17 C 0.53 9.58 5.66 -10.98 -0.06 9.51 16 18 O -0.52 -11.31 15.31 5.56 0.09 -11.23 16 19 N -0.63 -8.68 3.19 -170.53 -0.54 -9.23 16 20 C 0.10 1.00 6.45 -3.07 -0.02 0.98 16 21 C -0.13 -0.96 6.95 -24.91 -0.17 -1.13 16 22 C -0.13 -1.04 7.08 -24.58 -0.17 -1.22 16 23 C 0.11 1.22 6.91 -2.53 -0.02 1.20 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 26 H 0.07 1.06 2.75 -51.93 -0.14 0.92 16 27 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.46 3.23 -51.93 -0.17 1.29 16 31 H 0.04 0.57 8.11 -51.93 -0.42 0.15 16 32 H 0.08 1.51 6.65 -51.93 -0.35 1.16 16 33 H 0.07 1.41 6.71 -51.93 -0.35 1.07 16 34 H 0.08 1.80 7.02 -51.93 -0.36 1.44 16 35 H 0.03 0.70 7.62 -51.93 -0.40 0.30 16 36 H 0.04 0.88 3.52 -51.93 -0.18 0.69 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.09 1.59 7.63 -51.93 -0.40 1.19 16 39 H 0.10 1.57 2.57 -51.93 -0.13 1.44 16 40 H 0.07 0.64 8.07 -51.93 -0.42 0.22 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.94 8.03 -51.93 -0.42 0.53 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -32.45 346.01 -8.64 -41.09 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.92 Total: 1.63 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.18 Total: -6.34 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.81 Total: -47.45 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.45 -8.64 -41.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157246574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.050 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds