Wall clock time and date at job start Tue Mar 31 2020 05:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47020 * 2 1 4 4 C 1.52998 * 109.47214 * 240.00100 * 2 1 3 5 5 C 1.53001 * 109.47214 * 119.99749 * 2 1 3 6 6 N 1.46900 * 109.46858 * 83.70891 * 5 2 1 7 7 C 1.46892 * 111.00363 * 78.74342 * 6 5 2 8 8 C 1.50708 * 109.47072 * 75.60362 * 7 6 5 9 9 H 1.08002 * 119.99490 * 355.16122 * 8 7 6 10 10 C 1.37876 * 119.99966 * 175.15560 * 8 7 6 11 11 N 1.31514 * 120.00209 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99721 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47261 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47058 * 119.99985 * 12 10 8 15 15 H 1.48498 * 109.47088 * 240.00205 * 12 10 8 16 16 C 1.46907 * 111.00102 * 314.79145 * 6 5 2 17 17 C 1.50708 * 109.47022 * 285.48973 * 16 6 5 18 18 O 1.21280 * 119.99900 * 359.97438 * 17 16 6 19 19 N 1.34773 * 119.99949 * 179.72261 * 17 16 6 20 20 C 1.47026 * 125.64857 * 359.96336 * 19 17 16 21 21 C 1.54304 * 107.27558 * 180.96815 * 20 19 17 22 22 C 1.55160 * 102.86620 * 22.52930 * 21 20 19 23 23 C 1.47416 * 125.64746 * 180.27947 * 19 17 16 24 24 H 1.09000 * 109.46706 * 303.78870 * 1 2 3 25 25 H 1.09003 * 109.46814 * 63.78372 * 1 2 3 26 26 H 1.08993 * 109.47240 * 183.78642 * 1 2 3 27 27 H 1.09005 * 109.46908 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47223 * 300.00000 * 3 2 1 29 29 H 1.09002 * 109.47316 * 60.00392 * 3 2 1 30 30 H 1.08998 * 109.47225 * 290.20204 * 4 2 1 31 31 H 1.09000 * 109.47011 * 50.20202 * 4 2 1 32 32 H 1.09006 * 109.47266 * 170.20342 * 4 2 1 33 33 H 1.08998 * 109.47238 * 323.70965 * 5 2 1 34 34 H 1.09001 * 109.47358 * 203.70334 * 5 2 1 35 35 H 1.09001 * 109.47407 * 195.60329 * 7 6 5 36 36 H 1.09002 * 109.47496 * 315.60637 * 7 6 5 37 37 H 0.96999 * 119.99744 * 179.97438 * 11 10 8 38 38 H 1.08995 * 109.47542 * 165.48630 * 16 6 5 39 39 H 1.09005 * 109.46964 * 45.48545 * 16 6 5 40 40 H 1.09000 * 109.88344 * 300.51522 * 20 19 17 41 41 H 1.09003 * 109.88081 * 61.67877 * 20 19 17 42 42 H 1.08996 * 110.92969 * 264.11558 * 21 20 19 43 43 H 1.09004 * 110.59097 * 140.78675 * 21 20 19 44 44 H 1.08998 * 111.00599 * 206.22489 * 22 21 20 45 45 H 1.09004 * 111.00552 * 82.37369 * 22 21 20 46 46 H 1.09003 * 110.36434 * 274.67030 * 23 19 17 47 47 H 1.08993 * 110.37173 * 36.88342 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 2.0601 -2.1695 1.0046 7 6 3.2344 -2.5529 0.2097 8 6 4.4617 -2.5317 1.0841 9 1 4.3915 -2.1858 2.1048 10 6 5.6739 -2.9541 0.5810 11 7 5.7594 -3.3749 -0.6620 12 14 7.1949 -2.9284 1.6652 13 1 6.8349 -2.4148 3.0111 14 1 7.7377 -4.3051 1.7891 15 1 8.2215 -2.0444 1.0569 16 6 0.8183 -2.6112 0.3558 17 6 -0.3002 -2.6206 1.3658 18 8 -0.0840 -2.2923 2.5131 19 7 -1.5418 -2.9891 0.9928 20 6 -1.9429 -3.4025 -0.3599 21 6 -3.4552 -3.7062 -0.3167 22 6 -3.9351 -2.8964 0.9167 23 6 -2.7240 -3.0380 1.8721 24 1 -0.3633 0.5715 0.8541 25 1 -0.3633 0.4540 -0.9220 26 1 -0.3633 -1.0253 0.0679 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.8266 -1.7869 -1.1662 31 1 1.5410 -0.3183 -2.1306 32 1 3.1159 -0.5723 -1.3410 33 1 1.3802 -0.5038 2.0892 34 1 3.0483 -0.3779 1.4809 35 1 3.0905 -3.5567 -0.1903 36 1 3.3621 -1.8490 -0.6127 37 1 6.6124 -3.6717 -1.0160 38 1 0.9548 -3.6157 -0.0446 39 1 0.5693 -1.9273 -0.4557 40 1 -1.7446 -2.5976 -1.0676 41 1 -1.3950 -4.2986 -0.6514 42 1 -3.6344 -4.7716 -0.1719 43 1 -3.9435 -3.3518 -1.2245 44 1 -4.8302 -3.3409 1.3518 45 1 -4.1068 -1.8520 0.6557 46 1 -2.7658 -3.9914 2.3988 47 1 -2.7018 -2.2129 2.5840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157246574.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:52 Heat of formation + Delta-G solvation = 0.596915 kcal Electronic energy + Delta-G solvation = -24410.190731 eV Core-core repulsion = 21208.382500 eV Total energy + Delta-G solvation = -3201.808231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.89252 -40.01260 -38.06428 -35.59098 -34.25690 -32.81669 -30.59650 -29.67232 -29.25309 -28.10813 -27.60715 -25.79269 -24.25298 -22.42339 -21.86347 -20.36603 -19.71631 -18.62148 -18.06776 -17.67994 -16.83726 -16.61837 -16.30245 -15.87941 -15.51438 -15.17412 -14.73265 -14.48027 -14.23563 -14.20871 -14.08196 -13.81190 -13.28356 -13.19289 -12.99333 -12.84485 -12.76165 -12.68599 -12.57923 -12.40010 -12.15791 -12.10859 -12.09236 -12.00319 -11.77796 -11.54480 -11.45272 -11.24549 -11.22801 -10.64519 -10.49984 -9.59938 -8.65991 -8.13651 -6.20959 1.37974 1.39488 1.52706 1.68818 1.99185 2.42766 3.15574 3.39555 3.58777 3.73514 3.84286 3.90339 3.98652 4.03919 4.09646 4.30153 4.34904 4.37131 4.52935 4.54568 4.61645 4.66279 4.73629 4.79444 4.82562 4.90718 4.93484 4.98012 5.00501 5.04318 5.08642 5.15703 5.22148 5.22636 5.30044 5.34437 5.43898 5.47918 5.49285 5.49959 5.71113 6.13712 6.45733 6.49214 6.70949 6.92016 7.29945 7.45466 8.94099 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020302 B = 0.004974 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.821369 B = 5627.630872 C = 6154.368782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.129 4.129 4 C -0.157 4.157 5 C 0.078 3.922 6 N -0.536 5.536 7 C 0.174 3.826 8 C -0.517 4.517 9 H 0.044 0.956 10 C 0.009 3.991 11 N -0.928 5.928 12 Si 0.957 3.043 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.275 1.275 16 C 0.009 3.991 17 C 0.532 3.468 18 O -0.568 6.568 19 N -0.627 5.627 20 C 0.085 3.915 21 C -0.121 4.121 22 C -0.121 4.121 23 C 0.096 3.904 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.051 0.949 35 H -0.001 1.001 36 H 0.039 0.961 37 H 0.263 0.737 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.632 3.619 -4.515 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.101 4.101 3 C -0.187 4.187 4 C -0.213 4.213 5 C -0.050 4.050 6 N -0.259 5.259 7 C 0.049 3.951 8 C -0.556 4.556 9 H 0.062 0.938 10 C -0.189 4.189 11 N -0.570 5.570 12 Si 0.782 3.218 13 H -0.199 1.199 14 H -0.204 1.204 15 H -0.200 1.200 16 C -0.121 4.121 17 C 0.321 3.679 18 O -0.446 6.446 19 N -0.363 5.363 20 C -0.037 4.037 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.027 4.027 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.017 0.983 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.098 0.902 46 H 0.081 0.919 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.262 3.488 -3.539 20.862 hybrid contribution 1.394 0.000 0.093 1.398 sum -18.867 3.488 -3.445 19.494 Atomic orbital electron populations 1.22434 0.93610 1.02491 1.02352 1.21166 0.96546 0.96891 0.95508 1.21754 1.00357 0.94269 1.02309 1.22634 1.00418 1.00924 0.97351 1.22095 1.00001 0.86541 0.96408 1.61750 1.01117 1.14481 1.48555 1.20353 0.86442 0.95084 0.93190 1.21502 0.93845 1.41953 0.98315 0.93799 1.25665 1.01627 0.95210 0.96403 1.70039 1.26227 1.45221 1.15465 0.85523 0.79423 0.77837 0.78969 1.19921 1.20446 1.20008 1.22967 0.90225 1.03010 0.95893 1.20561 0.82799 0.75696 0.88843 1.90632 1.82833 1.49257 1.21911 1.48678 1.07732 1.67011 1.12838 1.22375 0.97906 1.00534 0.82918 1.22646 0.91880 1.01548 0.99755 1.22765 0.96331 1.01762 0.94982 1.22361 0.84847 1.01270 0.94176 0.93241 0.90473 0.91627 0.93863 0.90932 0.92332 0.91609 0.90956 0.93617 0.92536 0.93046 0.98328 0.94382 0.92800 0.89815 0.86240 0.90307 0.91244 0.89614 0.87559 0.87671 0.90170 0.91908 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.17 7.63 71.98 0.55 -3.62 16 2 C -0.10 -3.28 0.77 -52.18 -0.04 -3.32 16 3 C -0.13 -3.75 8.34 71.98 0.60 -3.15 16 4 C -0.16 -5.37 6.24 71.98 0.45 -4.93 16 5 C 0.08 3.32 4.68 86.30 0.40 3.73 16 6 N -0.54 -25.00 4.21 -905.34 -3.81 -28.82 16 7 C 0.17 9.24 3.79 85.56 0.32 9.56 16 8 C -0.52 -30.67 8.53 25.60 0.22 -30.45 16 9 H 0.04 2.70 7.74 -2.91 -0.02 2.67 16 10 C 0.01 0.51 5.46 84.65 0.46 0.97 16 11 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 12 Si 0.96 46.19 29.54 68.60 2.03 48.22 16 13 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 15 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 16 C 0.01 0.35 3.19 85.56 0.27 0.62 16 17 C 0.53 19.40 5.66 87.66 0.50 19.90 16 18 O -0.57 -25.81 15.31 -3.03 -0.05 -25.86 16 19 N -0.63 -16.65 3.19 -811.84 -2.59 -19.24 16 20 C 0.08 1.52 6.45 86.72 0.56 2.08 16 21 C -0.12 -1.30 6.95 31.78 0.22 -1.08 16 22 C -0.12 -1.47 7.08 31.99 0.23 -1.25 16 23 C 0.10 2.09 6.91 86.86 0.60 2.69 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.08 1.68 8.13 -2.39 -0.02 1.66 16 26 H 0.07 1.86 2.75 -2.39 -0.01 1.85 16 27 H 0.04 1.37 8.12 -2.38 -0.02 1.35 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.43 3.23 -2.39 -0.01 2.42 16 31 H 0.07 1.97 8.11 -2.39 -0.02 1.95 16 32 H 0.05 1.84 6.65 -2.38 -0.02 1.83 16 33 H 0.06 2.50 6.71 -2.39 -0.02 2.49 16 34 H 0.05 2.43 7.02 -2.39 -0.02 2.42 16 35 H 0.00 -0.08 7.62 -2.39 -0.02 -0.10 16 36 H 0.04 2.01 3.52 -2.39 -0.01 2.00 16 37 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 38 H 0.08 3.14 7.63 -2.39 -0.02 3.12 16 39 H 0.12 3.85 2.57 -2.38 -0.01 3.85 16 40 H 0.08 1.25 8.07 -2.39 -0.02 1.23 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.06 1.47 8.03 -2.39 -0.02 1.45 16 Total: -1.00 -73.58 346.01 2.15 -71.43 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.94 Total: 17.76 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.34 Total: -8.25 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -6.12 Total: -103.30 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.05 Total: -25.86 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -73.58 2.15 -71.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157246574.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.030 kcal (2) G-P(sol) polarization free energy of solvation -73.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds