Wall clock time and date at job start Tue Mar 31 2020 05:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47327 * 2 1 4 4 C 1.52994 * 109.47299 * 120.00332 * 2 1 3 5 5 C 1.50699 * 109.47070 * 299.99827 * 4 2 1 6 6 H 1.08002 * 120.00008 * 0.02562 * 5 4 2 7 7 C 1.37877 * 119.99926 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99927 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00335 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47451 * 89.99945 * 9 7 5 11 11 H 1.48502 * 109.47589 * 210.00006 * 9 7 5 12 12 H 1.48502 * 109.47316 * 329.99779 * 9 7 5 13 13 C 1.53002 * 109.46767 * 240.00287 * 2 1 3 14 14 N 1.46895 * 109.47415 * 54.59091 * 13 2 1 15 15 C 1.46847 * 111.00048 * 210.98774 * 14 13 2 16 16 C 1.53040 * 109.52366 * 174.15685 * 15 14 13 17 17 C 1.53121 * 109.27645 * 59.18160 * 16 15 14 18 18 C 1.52998 * 109.57529 * 182.40716 * 17 16 15 19 19 C 1.50693 * 109.47291 * 294.71708 * 18 17 16 20 20 N 1.34775 * 120.00241 * 180.02562 * 19 18 17 21 21 O 1.21287 * 120.00106 * 359.97438 * 19 18 17 22 22 C 1.53121 * 109.16066 * 302.34337 * 17 16 15 23 23 C 1.46851 * 111.00368 * 86.77622 * 14 13 2 24 24 H 1.09000 * 109.46953 * 305.51571 * 1 2 3 25 25 H 1.08992 * 109.46798 * 65.51484 * 1 2 3 26 26 H 1.08997 * 109.46700 * 185.51572 * 1 2 3 27 27 H 1.08991 * 109.47282 * 193.21389 * 3 2 1 28 28 H 1.09000 * 109.47104 * 313.22086 * 3 2 1 29 29 H 1.09009 * 109.46698 * 73.21581 * 3 2 1 30 30 H 1.09001 * 109.47280 * 179.97438 * 4 2 1 31 31 H 1.09002 * 109.47489 * 59.99736 * 4 2 1 32 32 H 0.97004 * 119.99804 * 180.02562 * 8 7 5 33 33 H 1.09009 * 109.46793 * 174.59275 * 13 2 1 34 34 H 1.08997 * 109.47126 * 294.58397 * 13 2 1 35 35 H 1.09000 * 109.46066 * 294.17532 * 15 14 13 36 36 H 1.08999 * 109.46051 * 54.14281 * 15 14 13 37 37 H 1.08997 * 109.50562 * 299.24285 * 16 15 14 38 38 H 1.09002 * 109.50310 * 179.11819 * 16 15 14 39 39 H 1.09004 * 109.52407 * 62.24664 * 17 16 15 40 40 H 1.09007 * 109.47118 * 54.71306 * 18 17 16 41 41 H 1.08997 * 109.46919 * 174.71274 * 18 17 16 42 42 H 0.97004 * 119.99908 * 359.97438 * 20 19 18 43 43 H 0.96999 * 120.00238 * 179.97438 * 20 19 18 44 44 H 1.09000 * 109.50702 * 297.71487 * 22 17 16 45 45 H 1.09004 * 109.50432 * 177.59278 * 22 17 16 46 46 H 1.09004 * 109.46012 * 305.86220 * 23 14 13 47 47 H 1.09007 * 109.45970 * 65.83076 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5378 -0.0109 2.4796 6 1 0.9165 0.8670 2.3806 7 6 1.8705 -0.4824 3.7319 8 7 1.4317 0.1373 4.8058 9 14 2.9444 -2.0011 3.9032 10 1 4.3721 -1.5953 3.9493 11 1 2.5928 -2.7173 5.1557 12 1 2.7221 -2.8983 2.7410 13 6 2.0400 -0.7212 -1.2493 14 7 1.4466 -0.1082 -2.4451 15 6 1.2750 -1.0997 -3.5147 16 6 0.5245 -0.4630 -4.6867 17 6 1.3197 0.7395 -5.2027 18 6 0.5465 1.4174 -6.3356 19 6 0.4504 0.4784 -7.5103 20 7 -0.1915 0.8643 -8.6308 21 8 0.9515 -0.6243 -7.4478 22 6 1.5262 1.7345 -4.0572 23 6 2.2476 1.0341 -2.9035 24 1 -0.3633 0.5970 0.8365 25 1 -0.3632 0.4259 -0.9352 26 1 -0.3632 -1.0229 0.0988 27 1 3.1044 1.4515 -0.2349 28 1 1.4977 2.0196 -0.7489 29 1 1.8814 1.8839 0.9840 30 1 3.1301 -0.7217 1.2489 31 1 1.6767 -1.7490 1.2492 32 1 1.6661 -0.1942 5.6868 33 1 3.1257 -0.6381 -1.2991 34 1 1.7580 -1.7730 -1.2022 35 1 2.2530 -1.4422 -3.8527 36 1 0.7044 -1.9475 -3.1357 37 1 -0.4590 -0.1326 -4.3526 38 1 0.4110 -1.1946 -5.4867 39 1 2.2885 0.4039 -5.5728 40 1 -0.4559 1.6711 -5.9904 41 1 1.0673 2.3258 -6.6381 42 1 -0.5919 1.7464 -8.6810 43 1 -0.2530 0.2601 -9.3871 44 1 0.5584 2.0994 -3.7132 45 1 2.1284 2.5728 -4.4075 46 1 2.3835 1.7359 -2.0806 47 1 3.2210 0.6815 -3.2446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159845495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:50 Heat of formation + Delta-G solvation = -59.316270 kcal Electronic energy + Delta-G solvation = -23278.530356 eV Core-core repulsion = 20074.124094 eV Total energy + Delta-G solvation = -3204.406262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.16404 -38.89569 -36.52906 -33.99995 -33.69218 -32.06822 -30.76361 -29.02678 -27.49493 -26.37509 -25.41241 -22.90399 -22.85911 -21.64895 -20.51798 -19.61419 -17.78937 -17.59573 -16.90915 -16.70246 -15.71278 -15.34844 -14.86134 -14.59478 -14.36178 -14.08181 -13.80676 -13.38356 -13.32986 -12.66748 -12.64895 -12.54457 -12.29813 -12.05452 -11.94341 -11.50690 -11.13584 -11.03619 -10.90461 -10.78986 -10.68312 -10.46427 -10.33168 -10.29484 -10.21552 -10.02523 -9.81255 -9.71113 -9.57517 -9.06968 -8.85620 -8.44490 -7.86960 -5.95183 -3.90554 2.37414 3.23233 3.35845 3.43493 3.47823 4.22781 4.51250 4.53022 4.65892 4.70619 5.01996 5.21865 5.30590 5.36368 5.38191 5.46909 5.54604 5.65412 5.71141 5.74486 5.90039 5.93824 6.00896 6.08780 6.11734 6.18587 6.24257 6.27475 6.37003 6.42733 6.49109 6.57283 6.72199 6.80190 6.91377 6.98959 7.19741 7.25965 7.29663 7.40905 7.48594 7.51244 7.61576 7.91989 7.97727 8.65943 9.11452 9.68465 11.18004 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.003227 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.435872 B = 8673.585455 C = 8906.197309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.041 4.041 3 C -0.134 4.134 4 C -0.006 4.006 5 C -0.503 4.503 6 H 0.078 0.922 7 C 0.063 3.937 8 N -0.907 5.907 9 Si 0.875 3.125 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.063 3.937 14 N -0.528 5.528 15 C 0.057 3.943 16 C -0.113 4.113 17 C -0.073 4.073 18 C -0.138 4.138 19 C 0.515 3.485 20 N -0.862 5.862 21 O -0.538 6.538 22 C -0.111 4.111 23 C 0.040 3.960 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.007 0.993 31 H 0.013 0.987 32 H 0.261 0.739 33 H 0.031 0.969 34 H 0.062 0.938 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.400 0.600 43 H 0.399 0.601 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 4.274 -25.640 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.042 4.042 3 C -0.191 4.191 4 C -0.044 4.044 5 C -0.541 4.541 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.703 3.297 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.065 4.065 14 N -0.253 5.253 15 C -0.071 4.071 16 C -0.151 4.151 17 C -0.092 4.092 18 C -0.178 4.178 19 C 0.300 3.700 20 N -0.425 5.425 21 O -0.414 6.414 22 C -0.148 4.148 23 C -0.088 4.088 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.228 0.772 43 H 0.229 0.771 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -2.484 3.758 -25.091 25.492 hybrid contribution 1.210 -0.959 -0.369 1.587 sum -1.274 2.799 -25.460 25.645 Atomic orbital electron populations 1.21571 0.94655 1.00527 1.00432 1.20339 0.96134 0.94990 0.92745 1.21986 0.98384 0.96644 1.02038 1.19654 0.95410 0.95801 0.93530 1.21147 1.31273 1.13053 0.88663 0.90394 1.25020 0.95909 0.96687 0.96055 1.69917 1.46321 1.40674 0.97785 0.86853 0.81118 0.84259 0.77456 1.20554 1.21622 1.19143 1.22342 0.96090 0.97931 0.90121 1.61906 1.49976 1.08483 1.04895 1.22079 0.98574 0.94626 0.91799 1.21731 0.98735 0.97391 0.97208 1.20976 0.99135 0.95771 0.93284 1.21773 1.03455 0.98580 0.93962 1.20866 0.76842 0.88099 0.84145 1.43972 1.59878 1.20968 1.17716 1.90735 1.46404 1.22190 1.82068 1.21651 1.01497 0.97096 0.94603 1.22496 0.93710 0.94452 0.98095 0.92696 0.93176 0.94553 0.94680 0.93619 0.91110 0.97514 0.96853 0.92965 0.95024 0.91940 0.95605 0.91082 0.91729 0.90323 0.90956 0.88613 0.88936 0.77156 0.77113 0.90948 0.91995 0.88583 0.95781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 7.95 37.16 0.30 -1.95 16 2 C -0.04 -0.82 0.61 -154.51 -0.09 -0.91 16 3 C -0.13 -2.51 6.87 37.16 0.26 -2.25 16 4 C -0.01 -0.15 3.11 -27.89 -0.09 -0.23 16 5 C -0.50 -14.06 8.08 -34.44 -0.28 -14.34 16 6 H 0.08 2.32 6.03 -52.49 -0.32 2.00 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 9 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 13 C 0.06 1.07 4.24 -3.83 -0.02 1.06 16 14 N -0.53 -7.79 3.40 -234.66 -0.80 -8.59 16 15 C 0.06 0.78 5.36 -3.83 -0.02 0.76 16 16 C -0.11 -1.35 5.09 -26.65 -0.14 -1.48 16 17 C -0.07 -0.75 1.89 -90.50 -0.17 -0.92 16 18 C -0.14 -1.00 5.18 -27.89 -0.14 -1.14 16 19 C 0.51 4.55 7.83 -10.99 -0.09 4.46 16 20 N -0.86 -4.25 8.87 31.22 0.28 -3.97 16 21 O -0.54 -7.16 14.83 5.55 0.08 -7.07 16 22 C -0.11 -1.15 5.38 -26.65 -0.14 -1.29 16 23 C 0.04 0.53 4.93 -3.83 -0.02 0.51 16 24 H 0.05 1.18 6.81 -51.93 -0.35 0.83 16 25 H 0.05 0.89 7.27 -51.93 -0.38 0.51 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.62 7.67 -51.93 -0.40 0.22 16 28 H 0.05 0.76 6.29 -51.93 -0.33 0.43 16 29 H 0.07 1.52 6.30 -51.92 -0.33 1.20 16 30 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 31 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.03 0.54 7.77 -51.92 -0.40 0.14 16 34 H 0.06 1.08 7.62 -51.93 -0.40 0.69 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.02 6.04 -51.93 -0.31 0.71 16 39 H 0.07 0.86 7.95 -51.93 -0.41 0.44 16 40 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.40 0.75 8.83 -40.82 -0.36 0.39 16 43 H 0.40 1.74 8.93 -40.82 -0.36 1.38 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.10 1.33 4.16 -51.93 -0.22 1.12 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -32.97 349.06 -8.11 -41.08 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.29 Total: -0.87 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -0.74 Total: -15.98 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.25 Total: -39.87 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.08 Total: -7.07 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.97 -8.11 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159845495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.239 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds