Wall clock time and date at job start Tue Mar 31 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50696 * 120.00194 * 2 1 4 4 C 1.31001 * 120.00158 * 179.97438 * 2 1 3 5 5 C 1.50703 * 119.99837 * 0.02562 * 4 2 1 6 6 N 1.46905 * 109.47032 * 125.00095 * 5 4 2 7 7 C 1.46904 * 110.99407 * 288.11682 * 6 5 4 8 8 C 1.50702 * 109.46801 * 160.51547 * 7 6 5 9 9 H 1.08001 * 120.00178 * 357.99735 * 8 7 6 10 10 C 1.37880 * 119.99815 * 177.99316 * 8 7 6 11 11 N 1.31519 * 119.99937 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99833 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47365 * 59.99820 * 12 10 8 14 14 H 1.48497 * 109.47129 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47015 * 299.99890 * 12 10 8 16 16 C 1.46897 * 110.99878 * 164.16368 * 6 5 4 17 17 C 1.52993 * 109.47148 * 293.95066 * 16 6 5 18 18 N 1.46908 * 109.47128 * 180.02562 * 17 16 6 19 19 C 1.47014 * 110.99546 * 46.31494 * 18 17 16 20 20 C 1.53102 * 109.25326 * 182.34794 * 19 18 17 21 21 O 1.43019 * 109.29538 * 303.22502 * 20 19 18 22 22 C 1.43012 * 113.73832 * 58.64755 * 21 20 19 23 23 C 1.47012 * 110.99921 * 169.99807 * 18 17 16 24 24 H 1.08999 * 109.47552 * 239.99981 * 1 2 3 25 25 H 1.08993 * 109.47140 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46575 * 120.00245 * 1 2 3 27 27 H 1.09000 * 109.47212 * 270.00229 * 3 2 1 28 28 H 1.09011 * 109.46797 * 29.99369 * 3 2 1 29 29 H 1.08994 * 109.47622 * 149.99084 * 3 2 1 30 30 H 1.07997 * 120.00118 * 180.02562 * 4 2 1 31 31 H 1.08993 * 109.47103 * 4.99691 * 5 4 2 32 32 H 1.08997 * 109.47104 * 244.99633 * 5 4 2 33 33 H 1.09001 * 109.46917 * 280.51210 * 7 6 5 34 34 H 1.08991 * 109.47640 * 40.51400 * 7 6 5 35 35 H 0.96999 * 119.99336 * 180.02562 * 11 10 8 36 36 H 1.09005 * 109.46968 * 173.94960 * 16 6 5 37 37 H 1.09002 * 109.47111 * 53.95303 * 16 6 5 38 38 H 1.08995 * 109.47222 * 60.00115 * 17 16 6 39 39 H 1.09002 * 109.47308 * 300.00116 * 17 16 6 40 40 H 1.09005 * 109.47231 * 62.44396 * 19 18 17 41 41 H 1.08995 * 109.55006 * 302.30686 * 19 18 17 42 42 H 1.08996 * 109.50528 * 183.26098 * 20 19 18 43 43 H 1.09003 * 109.50081 * 63.18120 * 20 19 18 44 44 H 1.08998 * 109.51154 * 61.26326 * 22 21 20 45 45 H 1.08998 * 109.50462 * 181.35274 * 22 21 20 46 46 H 1.09007 * 109.50509 * 57.67043 * 23 18 17 47 47 H 1.08994 * 109.51031 * 297.54095 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4085 -2.4396 0.0005 6 7 1.8521 -3.2611 -1.1337 7 6 1.3583 -2.7143 -2.4046 8 6 2.1870 -3.2567 -3.5405 9 1 3.0194 -3.9137 -3.3360 10 6 1.8824 -2.9142 -4.8409 11 7 0.8690 -2.1137 -5.0899 12 14 2.9092 -3.5870 -6.2489 13 1 2.8442 -5.0706 -6.2441 14 1 2.3802 -3.0721 -7.5374 15 1 4.3197 -3.1528 -6.0845 16 6 1.4359 -4.6598 -0.9652 17 6 2.1669 -5.2686 0.2330 18 7 1.7512 -6.6675 0.4012 19 6 1.7640 -7.3791 -0.8852 20 6 1.2695 -8.8126 -0.6742 21 8 2.0862 -9.4544 0.3089 22 6 2.0952 -8.7878 1.5742 23 6 2.5993 -7.3545 1.3861 24 1 -0.3634 -0.5138 0.8899 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3632 -0.5139 -0.8900 27 1 2.4422 1.6197 -1.0277 28 1 1.6713 2.0648 0.5138 29 1 3.2128 1.1748 0.5139 30 1 3.2420 -1.1345 0.0009 31 1 0.3403 -2.2424 -0.0895 32 1 1.6026 -2.9712 0.9320 33 1 0.3167 -3.0036 -2.5443 34 1 1.4341 -1.6272 -2.3864 35 1 0.6546 -1.8731 -6.0048 36 1 1.6820 -5.2231 -1.8654 37 1 0.3603 -4.7007 -0.7937 38 1 1.9209 -4.7054 1.1332 39 1 3.2426 -5.2277 0.0616 40 1 2.7802 -7.3991 -1.2793 41 1 1.1092 -6.8684 -1.5911 42 1 1.3320 -9.3612 -1.6139 43 1 0.2347 -8.7939 -0.3318 44 1 1.0847 -8.7677 1.9822 45 1 2.7545 -9.3190 2.2607 46 1 2.5540 -6.8249 2.3378 47 1 3.6289 -7.3746 1.0288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160863361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:45 Heat of formation + Delta-G solvation = -22.691605 kcal Electronic energy + Delta-G solvation = -23089.579030 eV Core-core repulsion = 19886.760933 eV Total energy + Delta-G solvation = -3202.818097 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.56172 -37.70229 -35.99832 -34.71085 -32.53323 -31.23777 -29.63250 -28.67339 -27.41006 -26.71692 -25.17902 -24.01964 -23.19653 -21.88149 -20.37401 -19.62271 -17.43489 -16.69203 -16.27001 -16.09565 -15.30226 -15.09362 -15.03429 -14.75405 -14.31718 -14.22706 -14.06813 -13.79200 -13.18090 -13.05680 -12.77230 -12.32048 -12.20982 -12.08100 -11.88036 -11.76796 -11.51067 -11.37801 -11.30469 -11.01848 -10.84400 -10.74458 -10.59936 -10.47412 -10.33542 -10.14763 -9.84371 -9.61830 -9.24237 -8.41579 -8.25875 -8.16832 -7.24538 -6.00980 -4.02160 2.67608 3.32676 3.37141 3.40013 3.76761 3.93899 4.43344 4.84231 5.00287 5.06650 5.08827 5.16505 5.30011 5.33699 5.34297 5.36955 5.49301 5.57611 5.59981 5.69862 5.77465 5.78405 5.86255 5.87407 5.91492 5.99061 6.01715 6.04426 6.09239 6.18211 6.24197 6.35815 6.43687 6.53896 6.58589 7.02594 7.07688 7.14810 7.15303 7.31042 7.33348 7.41420 7.83593 8.14668 8.21107 8.55932 9.05377 9.61732 11.09306 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010462 B = 0.005470 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.733584 B = 5117.825852 C = 7329.466645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.148 4.148 3 C -0.109 4.109 4 C -0.131 4.131 5 C 0.076 3.924 6 N -0.533 5.533 7 C 0.197 3.803 8 C -0.505 4.505 9 H 0.060 0.940 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.895 3.105 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.063 3.937 17 C 0.058 3.942 18 N -0.537 5.537 19 C 0.010 3.990 20 C 0.064 3.936 21 O -0.389 6.389 22 C 0.065 3.935 23 C 0.018 3.982 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.034 0.966 32 H 0.066 0.934 33 H -0.009 1.009 34 H 0.034 0.966 35 H 0.261 0.739 36 H 0.084 0.916 37 H 0.027 0.973 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 -5.388 13.288 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.149 4.149 3 C -0.166 4.166 4 C -0.149 4.149 5 C -0.052 4.052 6 N -0.258 5.258 7 C 0.072 3.928 8 C -0.543 4.543 9 H 0.078 0.922 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.066 4.066 17 C -0.069 4.069 18 N -0.263 5.263 19 C -0.118 4.118 20 C -0.013 4.013 21 O -0.308 6.308 22 C -0.012 4.012 23 C -0.111 4.111 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.052 0.948 32 H 0.084 0.916 33 H 0.009 0.991 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.376 -5.456 13.252 14.336 hybrid contribution 0.384 0.065 -1.171 1.235 sum 0.760 -5.391 12.080 13.251 Atomic orbital electron populations 1.20783 0.92874 1.01435 1.01852 1.21466 0.95541 0.94942 1.02989 1.20761 0.99099 0.94915 1.01834 1.22524 0.99480 0.93153 0.99765 1.21229 0.96370 0.92682 0.94922 1.62066 1.60416 1.00106 1.03163 1.19710 0.93480 0.95681 0.83943 1.21122 1.14065 1.28935 0.90206 0.92172 1.24968 0.95355 0.95389 0.98798 1.69950 1.28158 1.35542 1.20156 0.86618 0.80586 0.79191 0.81350 1.20332 1.21365 1.20251 1.22049 0.96234 0.90966 0.97353 1.22223 0.98496 0.86797 0.99418 1.62275 1.52499 1.02669 1.08861 1.22907 1.01636 0.94942 0.92292 1.22709 0.94215 0.92196 0.92178 1.87955 1.69670 1.51404 1.21770 1.22627 1.01164 0.91563 0.85847 1.22755 0.95458 0.95568 0.97272 0.92341 0.92831 0.91271 0.91675 0.92671 0.92419 0.87459 0.94776 0.91563 0.99106 0.94829 0.92944 0.89736 0.95500 0.91012 0.93984 0.93680 0.88391 0.88516 0.92406 0.92475 0.88820 0.89924 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 8.53 36.00 0.31 -1.40 16 2 C -0.15 -2.40 6.05 -101.07 -0.61 -3.02 16 3 C -0.11 -1.51 9.97 36.00 0.36 -1.15 16 4 C -0.13 -2.29 8.34 -36.02 -0.30 -2.59 16 5 C 0.08 1.36 5.08 -4.97 -0.03 1.34 16 6 N -0.53 -11.25 4.37 -237.52 -1.04 -12.29 16 7 C 0.20 5.06 4.59 -4.97 -0.02 5.04 16 8 C -0.50 -14.08 8.55 -34.44 -0.29 -14.37 16 9 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 12 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.06 1.18 4.05 -3.83 -0.02 1.17 16 17 C 0.06 0.91 5.24 -3.82 -0.02 0.89 16 18 N -0.54 -7.65 4.87 -234.30 -1.14 -8.80 16 19 C 0.01 0.15 4.94 -3.71 -0.02 0.13 16 20 C 0.06 0.79 7.01 37.21 0.26 1.05 16 21 O -0.39 -5.17 10.83 -35.23 -0.38 -5.55 16 22 C 0.07 0.71 7.01 37.21 0.26 0.97 16 23 C 0.02 0.22 5.63 -3.71 -0.02 0.20 16 24 H 0.06 0.80 7.85 -51.93 -0.41 0.39 16 25 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 26 H 0.07 1.21 7.66 -51.93 -0.40 0.81 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.65 8.05 -51.92 -0.42 0.24 16 29 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 30 H 0.11 1.89 8.04 -52.49 -0.42 1.47 16 31 H 0.03 0.63 5.71 -51.93 -0.30 0.33 16 32 H 0.07 1.06 5.94 -51.93 -0.31 0.76 16 33 H -0.01 -0.25 8.00 -51.93 -0.42 -0.66 16 34 H 0.03 0.93 7.12 -51.93 -0.37 0.56 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.08 1.75 5.56 -51.93 -0.29 1.46 16 37 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 38 H 0.07 1.07 6.28 -51.93 -0.33 0.74 16 39 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.49 6.05 -51.93 -0.31 1.17 16 42 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 47 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 364.36 15.07 5.49 5.49 Total: -1.00 -30.08 364.36 -10.16 -40.24 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.56 Total: 0.36 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.24 Total: -10.26 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -1.44 Total: -46.94 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.38 Total: -5.55 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.08 -10.16 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160863361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.549 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds