Wall clock time and date at job start Tue Mar 31 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46905 * 2 1 4 4 C 1.53002 * 109.46979 * 119.99357 * 2 1 3 5 5 C 1.53009 * 109.46948 * 175.00043 * 4 2 1 6 6 N 1.46501 * 109.47147 * 180.02562 * 5 4 2 7 7 C 1.34775 * 119.99681 * 270.00582 * 6 5 4 8 8 O 1.21589 * 119.99709 * 189.13269 * 7 6 5 9 9 N 1.34779 * 120.00723 * 9.12991 * 7 6 5 10 10 C 1.46490 * 120.00251 * 183.94083 * 9 7 6 11 11 C 1.53007 * 109.47329 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47607 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47415 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99928 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00074 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99922 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99923 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47126 * 90.00390 * 17 15 13 19 19 H 1.48501 * 109.47143 * 209.99921 * 17 15 13 20 20 H 1.48497 * 109.47367 * 330.00248 * 17 15 13 21 21 C 1.46491 * 119.99970 * 90.00061 * 6 5 4 22 22 C 1.53001 * 117.50138 * 195.82769 * 21 6 5 23 23 C 1.52998 * 59.99980 * 252.50919 * 22 21 6 24 24 H 1.08998 * 109.47366 * 299.99880 * 1 2 3 25 25 H 1.08997 * 109.46842 * 60.00413 * 1 2 3 26 26 H 1.08999 * 109.46838 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47366 * 240.00120 * 2 1 3 28 28 H 1.09004 * 109.47071 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47033 * 299.99470 * 3 2 1 30 30 H 1.08998 * 109.47011 * 59.99902 * 3 2 1 31 31 H 1.09004 * 109.47115 * 55.00741 * 4 2 1 32 32 H 1.08997 * 109.47341 * 295.00146 * 4 2 1 33 33 H 1.09004 * 109.46643 * 60.00409 * 5 4 2 34 34 H 1.08997 * 109.47183 * 300.00199 * 5 4 2 35 35 H 0.97006 * 119.98988 * 3.94398 * 9 7 6 36 36 H 1.08998 * 109.47809 * 300.00075 * 10 9 7 37 37 H 1.09008 * 109.47403 * 60.00363 * 10 9 7 38 38 H 1.08998 * 109.46858 * 300.00807 * 11 10 9 39 39 H 1.09008 * 109.46460 * 59.99934 * 11 10 9 40 40 H 1.09001 * 109.47320 * 300.00697 * 12 11 10 41 41 H 1.09000 * 109.46913 * 59.99893 * 12 11 10 42 42 H 0.96993 * 119.99810 * 180.02562 * 16 15 13 43 43 H 1.09005 * 115.55186 * 341.53352 * 21 6 5 44 44 H 1.09006 * 117.49412 * 359.97438 * 22 21 6 45 45 H 1.08999 * 117.50395 * 145.02230 * 22 21 6 46 46 H 1.08997 * 117.50250 * 252.50992 * 23 22 21 47 47 H 1.09008 * 117.51805 * 107.47703 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5649 -0.8309 1.1881 6 7 4.0532 -1.5219 2.3840 7 6 4.3736 -0.8160 3.4865 8 8 4.9325 -1.3630 4.4175 9 7 4.0745 0.4963 3.5571 10 6 4.4990 1.2829 4.7177 11 6 4.0364 2.7315 4.5489 12 6 4.4802 3.5532 5.7607 13 6 4.0240 4.9798 5.5947 14 1 3.4723 5.2712 4.7132 15 6 4.3110 5.9132 6.5682 16 7 3.9133 7.1583 6.4231 17 14 5.2648 5.4090 8.0932 18 1 6.7190 5.5835 7.8478 19 1 4.8508 6.2580 9.2391 20 1 4.9829 3.9848 8.4051 21 6 4.1931 -2.9802 2.3816 22 6 4.3434 -3.6778 3.7350 23 6 5.5464 -3.5608 2.7968 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6054 -1.7197 1.2953 32 1 1.7516 -0.1581 2.1370 33 1 3.9994 0.1677 1.1421 34 1 3.8533 -1.3939 0.3004 35 1 3.5781 0.9198 2.8393 36 1 4.0581 0.8634 5.6220 37 1 5.5858 1.2559 4.7972 38 1 4.4776 3.1508 3.6447 39 1 2.9496 2.7588 4.4693 40 1 4.0394 3.1340 6.6652 41 1 5.5670 3.5258 5.8400 42 1 4.1156 7.8149 7.1077 43 1 3.6379 -3.5044 1.6037 44 1 4.3387 -3.0515 4.6272 45 1 3.8870 -4.6611 3.8479 46 1 5.8813 -4.4671 2.2924 47 1 6.3327 -2.8576 3.0715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171448024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:54 Heat of formation + Delta-G solvation = -20.364752 kcal Electronic energy + Delta-G solvation = -22778.907257 eV Core-core repulsion = 19576.190060 eV Total energy + Delta-G solvation = -3202.717197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59011 -37.34974 -36.96752 -35.16721 -34.22076 -32.95596 -31.21550 -29.05321 -27.40282 -27.08777 -23.87749 -23.47969 -22.32746 -22.02433 -20.63609 -20.24487 -19.48638 -17.62025 -16.94395 -16.46222 -15.73530 -15.40608 -15.23583 -14.55932 -14.50827 -14.28500 -13.96585 -13.82011 -13.61022 -13.20548 -12.75999 -12.66552 -12.55326 -12.28411 -12.03335 -11.90235 -11.72316 -11.45872 -11.30320 -11.05885 -10.93135 -10.90148 -10.86071 -10.83605 -10.37593 -10.11776 -9.89478 -9.74833 -9.52781 -9.22365 -8.83625 -8.55074 -8.34498 -6.06031 -4.04612 2.58730 3.17054 3.31873 3.39462 3.44129 3.84039 3.99228 4.45009 4.51231 4.56697 4.67039 4.78352 4.83806 4.94619 5.05585 5.14597 5.26623 5.28277 5.36306 5.42806 5.47800 5.51777 5.57095 5.67016 5.69429 5.71135 5.74794 5.78195 5.94126 6.02758 6.04265 6.07730 6.14395 6.33469 6.38103 6.47137 6.68908 6.72408 6.86267 6.95847 7.23817 7.37268 7.76075 8.02134 8.50527 8.69158 8.97779 9.56404 11.07235 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.003979 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.012328 B = 7035.588277 C = 8717.627967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.156 4.156 4 C -0.138 4.138 5 C 0.111 3.889 6 N -0.607 5.607 7 C 0.704 3.296 8 O -0.584 6.584 9 N -0.740 5.740 10 C 0.131 3.869 11 C -0.112 4.112 12 C -0.010 4.010 13 C -0.521 4.521 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.088 3.912 22 C -0.191 4.191 23 C -0.188 4.188 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.395 0.605 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.019 0.981 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.525 -19.885 -14.613 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.214 4.214 4 C -0.177 4.177 5 C -0.012 4.012 6 N -0.342 5.342 7 C 0.406 3.594 8 O -0.463 6.463 9 N -0.396 5.396 10 C 0.008 3.992 11 C -0.150 4.150 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.090 0.910 15 C -0.134 4.134 16 N -0.542 5.542 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.018 4.018 22 C -0.228 4.228 23 C -0.226 4.226 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.230 0.770 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.143 0.857 44 H 0.154 0.846 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.095 -20.065 -13.830 24.565 hybrid contribution 0.207 0.138 0.362 0.439 sum -2.888 -19.927 -13.468 24.225 Atomic orbital electron populations 1.21835 0.95019 1.01597 1.02067 1.21068 0.96000 0.96495 0.97686 1.21971 1.01168 0.95716 1.02511 1.22183 0.95459 1.01370 0.98676 1.21655 0.94106 0.97859 0.87629 1.46524 1.69643 1.05365 1.12625 1.16002 0.79392 0.81634 0.82375 1.90764 1.48070 1.68925 1.38533 1.45573 1.60668 1.08123 1.25216 1.21524 0.99588 0.91346 0.86780 1.21700 1.00801 0.91341 1.01199 1.19495 0.96282 0.95806 0.93264 1.21092 1.36203 0.91648 1.06994 0.91030 1.25021 0.95431 0.94784 0.98199 1.69910 1.46885 1.02390 1.35045 0.86784 0.80516 0.79118 0.82940 1.20246 1.21375 1.18866 1.21408 1.00889 0.79139 1.00316 1.23801 1.01077 1.01210 0.96753 1.23264 0.92765 1.02486 1.04134 0.92427 0.92621 0.92872 0.91173 0.92420 0.92475 0.92050 0.91392 0.91303 0.90236 0.90093 0.77037 0.91865 0.92041 0.92247 0.92190 0.96282 0.96734 0.92709 0.85728 0.84581 0.89628 0.89136 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.19 37.16 0.34 -0.70 16 2 C -0.09 -0.65 2.92 -90.62 -0.26 -0.92 16 3 C -0.16 -1.20 8.95 37.16 0.33 -0.87 16 4 C -0.14 -1.09 4.89 -26.73 -0.13 -1.23 16 5 C 0.11 0.95 4.82 -4.04 -0.02 0.93 16 6 N -0.61 -7.05 2.84 -171.80 -0.49 -7.54 16 7 C 0.70 10.67 8.04 -86.92 -0.70 9.97 16 8 O -0.58 -10.67 12.10 5.29 0.06 -10.61 16 9 N -0.74 -10.71 5.34 -65.23 -0.35 -11.05 16 10 C 0.13 2.22 5.68 -4.04 -0.02 2.20 16 11 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 12 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 13 C -0.52 -14.67 9.66 -34.44 -0.33 -15.01 16 14 H 0.07 2.14 7.99 -52.49 -0.42 1.73 16 15 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 16 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 17 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 21 C 0.09 0.92 6.60 -67.93 -0.45 0.47 16 22 C -0.19 -2.27 9.62 -26.73 -0.26 -2.53 16 23 C -0.19 -2.10 9.87 -26.73 -0.26 -2.36 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.66 7.64 -51.93 -0.40 0.26 16 33 H 0.08 0.69 5.27 -51.93 -0.27 0.42 16 34 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 35 H 0.39 4.85 5.97 -40.82 -0.24 4.61 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 41 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.14 2.10 5.29 -51.96 -0.27 1.82 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.10 1.35 7.54 -51.92 -0.39 0.95 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -31.99 368.89 -9.84 -41.83 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -8.61 Total: 2.46 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.12 Total: -10.80 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: -0.06 Total: -45.56 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.06 Total: -10.61 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.99 -9.84 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171448024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.466 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds