Wall clock time and date at job start Tue Mar 31 2020 06:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47162 * 2 1 4 4 C 1.53002 * 109.47429 * 120.00423 * 2 1 3 5 5 H 1.09000 * 109.57955 * 54.07610 * 4 2 1 6 6 C 1.53191 * 109.58585 * 293.79556 * 4 2 1 7 7 C 1.53037 * 109.31238 * 185.57449 * 6 4 2 8 8 C 1.53043 * 109.53415 * 61.36271 * 7 6 4 9 9 C 1.53187 * 109.31574 * 298.63547 * 8 7 6 10 10 N 1.46920 * 109.58453 * 174.50294 * 4 2 1 11 11 C 1.34773 * 120.63444 * 353.39614 * 10 4 2 12 12 O 1.21583 * 119.99894 * 352.92101 * 11 10 4 13 13 N 1.34780 * 120.00165 * 172.91821 * 11 10 4 14 14 C 1.46493 * 120.00079 * 185.07669 * 13 11 10 15 15 C 1.53003 * 109.47170 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.47139 * 180.02562 * 15 14 13 17 17 C 1.50691 * 109.47009 * 180.02562 * 16 15 14 18 18 H 1.08009 * 120.00104 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00096 * 179.97438 * 17 16 15 20 20 N 1.31521 * 120.00468 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00001 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47003 * 89.99855 * 21 19 17 23 23 H 1.48501 * 109.47290 * 210.00114 * 21 19 17 24 24 H 1.48497 * 109.46952 * 329.99765 * 21 19 17 25 25 H 1.09000 * 109.47489 * 65.04883 * 1 2 3 26 26 H 1.09004 * 109.47204 * 185.05244 * 1 2 3 27 27 H 1.09003 * 109.46814 * 305.04836 * 1 2 3 28 28 H 1.09003 * 109.47042 * 240.00581 * 2 1 3 29 29 H 1.08996 * 109.46965 * 183.13983 * 3 2 1 30 30 H 1.08998 * 109.47264 * 303.15150 * 3 2 1 31 31 H 1.09004 * 109.46429 * 63.14580 * 3 2 1 32 32 H 1.08999 * 109.49689 * 305.52696 * 6 4 2 33 33 H 1.08996 * 109.49843 * 65.62483 * 6 4 2 34 34 H 1.08995 * 109.46535 * 181.38060 * 7 6 4 35 35 H 1.09002 * 109.46393 * 301.35966 * 7 6 4 36 36 H 1.09007 * 109.49757 * 58.59012 * 8 7 6 37 37 H 1.09008 * 109.49483 * 178.64702 * 8 7 6 38 38 H 1.09007 * 109.58474 * 174.42443 * 9 8 7 39 39 H 1.09003 * 109.58913 * 294.84815 * 9 8 7 40 40 H 0.97004 * 119.99594 * 5.07725 * 13 11 10 41 41 H 1.09005 * 109.47402 * 299.99987 * 14 13 11 42 42 H 1.09006 * 109.47694 * 60.00003 * 14 13 11 43 43 H 1.08994 * 109.47205 * 299.99882 * 15 14 13 44 44 H 1.09001 * 109.47262 * 60.00263 * 15 14 13 45 45 H 1.09007 * 109.46654 * 299.99708 * 16 15 14 46 46 H 1.08995 * 109.47299 * 59.99899 * 16 15 14 47 47 H 0.96999 * 120.00381 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5938 -1.7142 1.3055 6 6 1.6623 0.0831 2.4969 7 6 2.2933 -0.5686 3.7295 8 6 3.8173 -0.5574 3.5906 9 6 4.2195 -1.3690 2.3553 10 7 3.5033 -0.8386 1.1872 11 6 4.1757 -0.4668 0.0799 12 8 3.5667 -0.1517 -0.9241 13 7 5.5233 -0.4443 0.0856 14 6 6.2523 0.0650 -1.0785 15 6 7.7571 -0.0188 -0.8147 16 6 8.5184 0.5138 -2.0304 17 6 10.0005 0.4306 -1.7708 18 1 10.3632 0.0376 -0.8324 19 6 10.8935 0.8562 -2.7311 20 7 12.1871 0.7841 -2.5044 21 14 10.2663 1.5352 -4.3544 22 1 10.0758 3.0032 -4.2363 23 1 11.2542 1.2488 -5.4256 24 1 8.9704 0.8934 -4.6917 25 1 -0.3634 0.4335 -0.9317 26 1 -0.3634 -1.0237 0.0905 27 1 -0.3633 0.5902 0.8414 28 1 1.8933 -0.5138 -0.8901 29 1 3.1285 1.4430 -0.0563 30 1 1.6313 1.9724 -0.8604 31 1 1.7234 1.9397 0.9169 32 1 2.0303 1.1042 2.3967 33 1 0.5780 0.0958 2.6071 34 1 2.0059 -0.0123 4.6217 35 1 1.9442 -1.5977 3.8151 36 1 4.1651 0.4698 3.4801 37 1 4.2669 -0.9999 4.4796 38 1 5.2943 -1.2825 2.1952 39 1 3.9532 -2.4156 2.5030 40 1 6.0105 -0.7654 0.8606 41 1 6.0026 -0.5341 -1.9543 42 1 5.9724 1.1033 -1.2569 43 1 8.0064 0.5806 0.0608 44 1 8.0374 -1.0569 -0.6363 45 1 8.2692 -0.0854 -2.9062 46 1 8.2381 1.5519 -2.2085 47 1 12.8153 1.0832 -3.1802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172335325.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:15 Heat of formation + Delta-G solvation = -23.054095 kcal Electronic energy + Delta-G solvation = -23343.989482 eV Core-core repulsion = 20141.155666 eV Total energy + Delta-G solvation = -3202.833816 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.03425 -37.87824 -36.11780 -34.87333 -33.25854 -32.79200 -31.19588 -29.94961 -27.26147 -27.08377 -25.14940 -24.05842 -22.76098 -21.31792 -20.50742 -20.26715 -19.19083 -17.48911 -16.76028 -16.12804 -15.91852 -15.26643 -14.81941 -14.75159 -14.64110 -14.46453 -14.05126 -13.88632 -13.34761 -13.07101 -12.85781 -12.67280 -12.66120 -12.11441 -11.94544 -11.90930 -11.82476 -11.41159 -11.14525 -11.11291 -10.94478 -10.87266 -10.71709 -10.61842 -10.45618 -10.06481 -9.85733 -9.70886 -9.22010 -8.94838 -8.72450 -8.54905 -8.44483 -6.05795 -4.04432 2.68826 3.30347 3.32067 3.39590 3.44258 3.92713 4.45188 4.50464 4.54072 4.59040 4.79405 4.96107 5.02749 5.13596 5.22798 5.26357 5.28462 5.41379 5.49998 5.54101 5.60260 5.64767 5.66925 5.71259 5.75035 5.78045 5.87941 5.96259 6.01318 6.06069 6.10974 6.22227 6.36843 6.40861 6.48877 6.60494 6.74869 6.78552 6.94582 7.01913 7.24562 7.38015 7.76512 8.07859 8.50840 8.76126 8.98025 9.56599 11.07470 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.003425 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.477955 B = 8172.220668 C = 8951.637754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 C -0.137 4.137 4 C 0.172 3.828 5 H 0.065 0.935 6 C -0.138 4.138 7 C -0.119 4.119 8 C -0.136 4.136 9 C 0.111 3.889 10 N -0.629 5.629 11 C 0.703 3.297 12 O -0.575 6.575 13 N -0.744 5.744 14 C 0.133 3.867 15 C -0.113 4.113 16 C -0.010 4.010 17 C -0.522 4.522 18 H 0.071 0.929 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.392 0.608 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.019 0.981 46 H 0.014 0.986 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.912 -3.688 12.739 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.124 4.124 3 C -0.193 4.193 4 C 0.068 3.932 5 H 0.083 0.917 6 C -0.176 4.176 7 C -0.156 4.156 8 C -0.174 4.174 9 C -0.012 4.012 10 N -0.367 5.367 11 C 0.406 3.594 12 O -0.454 6.454 13 N -0.401 5.401 14 C 0.009 3.991 15 C -0.151 4.151 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.141 0.859 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.228 0.772 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.154 -3.400 11.901 26.255 hybrid contribution 0.140 0.238 -0.300 0.408 sum -23.014 -3.162 11.601 25.966 Atomic orbital electron populations 1.21977 0.96522 1.00934 1.01396 1.21877 0.93409 0.97854 0.99256 1.22086 1.02800 0.94996 0.99463 1.21108 0.78126 0.98315 0.95624 0.91684 1.22139 1.00680 1.00553 0.94202 1.21509 0.95126 1.01015 0.97988 1.21926 0.96622 1.01249 0.97622 1.21615 0.96610 0.97518 0.85481 1.47267 1.06899 1.68414 1.14086 1.15912 0.81879 0.78343 0.83312 1.90838 1.65770 1.55677 1.33133 1.45672 1.04604 1.68779 1.21078 1.21485 0.92105 0.98687 0.86785 1.21700 0.90809 1.01512 1.01059 1.19494 0.96123 0.95859 0.93362 1.21101 0.88796 1.42411 1.03644 0.91047 1.25028 0.94744 0.95222 0.98494 1.69914 1.01269 1.48010 1.35083 0.86775 0.79096 0.79734 0.83699 1.20247 1.21385 1.18853 0.92727 0.93250 0.93344 0.85916 0.91184 0.93688 0.94573 0.90773 0.90904 0.91839 0.91961 0.91336 0.90776 0.90282 0.91441 0.77191 0.91938 0.92156 0.92284 0.92218 0.96288 0.96751 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.86 37.16 0.33 -1.09 16 2 C -0.11 -1.25 2.16 -90.62 -0.20 -1.44 16 3 C -0.14 -1.76 7.83 37.16 0.29 -1.47 16 4 C 0.17 1.76 2.65 -67.60 -0.18 1.58 16 5 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 6 C -0.14 -1.15 4.67 -26.61 -0.12 -1.27 16 7 C -0.12 -0.83 5.88 -26.69 -0.16 -0.98 16 8 C -0.14 -0.99 6.08 -26.61 -0.16 -1.15 16 9 C 0.11 0.94 6.44 -3.71 -0.02 0.92 16 10 N -0.63 -7.08 2.94 -170.91 -0.50 -7.58 16 11 C 0.70 10.18 6.83 -86.92 -0.59 9.58 16 12 O -0.57 -9.83 10.27 5.29 0.05 -9.78 16 13 N -0.74 -10.47 5.47 -65.23 -0.36 -10.83 16 14 C 0.13 2.21 5.68 -4.04 -0.02 2.19 16 15 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 16 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 17 C -0.52 -14.71 9.66 -34.45 -0.33 -15.05 16 18 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 21 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.41 6.99 -51.93 -0.36 0.04 16 28 H 0.12 1.83 5.58 -53.67 -0.30 1.53 16 29 H 0.07 1.08 5.03 -51.93 -0.26 0.82 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.41 6.03 -51.93 -0.31 0.10 16 32 H 0.07 0.72 5.96 -51.93 -0.31 0.41 16 33 H 0.07 0.54 7.01 -51.93 -0.36 0.17 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 37 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.08 0.63 5.56 -51.92 -0.29 0.34 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.39 4.63 5.94 -40.82 -0.24 4.39 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 46 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 47 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 LS Contribution 347.41 15.07 5.24 5.24 Total: -1.00 -31.41 347.41 -9.28 -40.69 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.29 Total: 1.13 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -1.52 Total: -8.96 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.09 Total: -45.46 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.05 Total: -9.78 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.41 -9.28 -40.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172335325.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.637 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds