Wall clock time and date at job start Tue Mar 31 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 C 1.52998 * 109.46953 * 120.00608 * 2 1 3 5 5 H 1.08999 * 109.58160 * 187.22107 * 4 2 1 6 6 C 1.53191 * 109.58567 * 307.64389 * 4 2 1 7 7 C 1.53102 * 109.32950 * 174.42618 * 6 4 2 8 8 C 1.53043 * 109.50451 * 298.65901 * 7 6 4 9 9 C 1.53189 * 109.33606 * 61.34794 * 8 7 6 10 10 N 1.46922 * 108.77869 * 305.34710 * 9 8 7 11 11 C 1.34772 * 120.63276 * 233.63296 * 10 9 8 12 12 O 1.21588 * 119.99743 * 176.87911 * 11 10 9 13 13 N 1.34772 * 120.00048 * 356.87767 * 11 10 9 14 14 C 1.46501 * 120.00079 * 184.96343 * 13 11 10 15 15 C 1.53001 * 109.47445 * 180.02562 * 14 13 11 16 16 C 1.52990 * 109.47639 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47634 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99812 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00222 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00007 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00241 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46617 * 90.00346 * 21 19 17 23 23 H 1.48500 * 109.47401 * 210.00321 * 21 19 17 24 24 H 1.48498 * 109.46788 * 330.00534 * 21 19 17 25 25 H 1.08995 * 109.46913 * 314.30396 * 1 2 3 26 26 H 1.08995 * 109.46789 * 74.30026 * 1 2 3 27 27 H 1.08997 * 109.46714 * 194.29813 * 1 2 3 28 28 H 1.09005 * 109.46731 * 240.00421 * 2 1 3 29 29 H 1.09002 * 109.46640 * 184.35952 * 3 2 1 30 30 H 1.08995 * 109.47455 * 304.35764 * 3 2 1 31 31 H 1.09005 * 109.46854 * 64.36365 * 3 2 1 32 32 H 1.09004 * 109.49960 * 294.37804 * 6 4 2 33 33 H 1.09004 * 109.49628 * 54.47328 * 6 4 2 34 34 H 1.09003 * 109.50471 * 178.63616 * 7 6 4 35 35 H 1.08997 * 109.45294 * 58.65794 * 7 6 4 36 36 H 1.09002 * 109.49384 * 301.38251 * 8 7 6 37 37 H 1.08995 * 109.49472 * 181.31808 * 8 7 6 38 38 H 1.08997 * 109.58710 * 65.13745 * 9 8 7 39 39 H 1.09008 * 109.58271 * 185.41633 * 9 8 7 40 40 H 0.96998 * 120.00260 * 4.96541 * 13 11 10 41 41 H 1.08999 * 109.47439 * 300.00351 * 14 13 11 42 42 H 1.09006 * 109.46984 * 60.00086 * 14 13 11 43 43 H 1.08999 * 109.47056 * 300.00545 * 15 14 13 44 44 H 1.09006 * 109.46992 * 60.00051 * 15 14 13 45 45 H 1.09004 * 109.46673 * 300.00448 * 16 15 14 46 46 H 1.09006 * 109.47162 * 59.99818 * 16 15 14 47 47 H 0.97002 * 120.00149 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1224 -0.6120 1.3179 6 6 1.3801 -0.1208 2.4944 7 6 1.7861 -0.9350 3.7257 8 6 1.2989 -2.3772 3.5680 9 6 1.9580 -3.0033 2.3350 10 7 1.6930 -2.1469 1.1709 11 6 1.1417 -2.6591 0.0529 12 8 0.8751 -1.9296 -0.8826 13 7 0.8860 -3.9798 -0.0283 14 6 0.3885 -4.5540 -1.2809 15 6 0.1815 -6.0597 -1.1050 16 6 -0.3374 -6.6595 -2.4133 17 6 -0.5420 -8.1424 -2.2399 18 1 -0.3233 -8.6104 -1.2915 19 6 -1.0072 -8.9019 -3.2924 20 7 -1.1853 -10.1962 -3.1411 21 14 -1.3848 -8.0927 -4.9331 22 1 -0.1679 -8.1081 -5.7842 23 1 -2.4743 -8.8378 -5.6135 24 1 -1.8121 -6.6888 -4.7058 25 1 -0.3633 0.7178 0.7354 26 1 -0.3633 0.2781 -0.9893 27 1 -0.3632 -0.9958 0.2538 28 1 1.8934 -0.5138 -0.8901 29 1 3.1272 1.4435 -0.0781 30 1 1.6144 1.9784 -0.8483 31 1 1.7419 1.9332 0.9266 32 1 1.7070 0.9118 2.6172 33 1 0.2964 -0.1487 2.3810 34 1 1.3375 -0.4956 4.6167 35 1 2.8716 -0.9271 3.8244 36 1 0.2160 -2.3839 3.4446 37 1 1.5676 -2.9509 4.4550 38 1 3.0334 -3.0801 2.4948 39 1 1.5423 -3.9962 2.1630 40 1 1.0312 -4.5503 0.7427 41 1 -0.5598 -4.0855 -1.5441 42 1 1.1139 -4.3770 -2.0751 43 1 1.1296 -6.5285 -0.8416 44 1 -0.5442 -6.2364 -0.3110 45 1 -1.2854 -6.1907 -2.6771 46 1 0.3885 -6.4829 -3.2071 47 1 -1.5130 -10.7305 -3.8814 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172335328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:18 Heat of formation + Delta-G solvation = -24.156335 kcal Electronic energy + Delta-G solvation = -23309.137709 eV Core-core repulsion = 20106.256097 eV Total energy + Delta-G solvation = -3202.881612 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02674 -37.86056 -36.13171 -34.85832 -33.25515 -32.78771 -31.18830 -29.96228 -27.26697 -27.04912 -25.14761 -24.06088 -22.75513 -21.30366 -20.50024 -20.29923 -19.16051 -17.49108 -16.75829 -16.13216 -15.92149 -15.21063 -14.80569 -14.75702 -14.63734 -14.39068 -14.05155 -13.85681 -13.42400 -13.07702 -12.85192 -12.68693 -12.64429 -12.05567 -12.01359 -11.87535 -11.84683 -11.39029 -11.15331 -11.04532 -10.94885 -10.85673 -10.70809 -10.66020 -10.47349 -10.05353 -9.86642 -9.70637 -9.21905 -9.01228 -8.67602 -8.54859 -8.44694 -6.05768 -4.04375 2.69279 3.31104 3.32080 3.39587 3.44282 3.94132 4.45226 4.50182 4.53754 4.58804 4.79782 4.96189 5.03109 5.13678 5.21977 5.26489 5.28511 5.41709 5.48707 5.53898 5.59443 5.65036 5.66846 5.71619 5.76673 5.81479 5.86859 5.97262 6.00251 6.06449 6.13349 6.23742 6.36229 6.41459 6.49066 6.61012 6.75303 6.78183 6.92604 7.02266 7.24698 7.38137 7.76593 8.08516 8.50939 8.76711 8.98106 9.56650 11.07511 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026904 B = 0.003378 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.491010 B = 8288.160551 C = 9092.981728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.097 4.097 3 C -0.153 4.153 4 C 0.170 3.830 5 H 0.065 0.935 6 C -0.136 4.136 7 C -0.119 4.119 8 C -0.135 4.135 9 C 0.111 3.889 10 N -0.628 5.628 11 C 0.699 3.301 12 O -0.574 6.574 13 N -0.745 5.745 14 C 0.133 3.867 15 C -0.113 4.113 16 C -0.010 4.010 17 C -0.522 4.522 18 H 0.071 0.929 19 C 0.066 3.934 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 H 0.026 0.974 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.114 0.886 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.392 0.608 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.019 0.981 46 H 0.014 0.986 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.598 21.332 14.172 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.115 4.115 3 C -0.211 4.211 4 C 0.067 3.933 5 H 0.083 0.917 6 C -0.174 4.174 7 C -0.157 4.157 8 C -0.174 4.174 9 C -0.012 4.012 10 N -0.366 5.366 11 C 0.402 3.598 12 O -0.453 6.453 13 N -0.401 5.401 14 C 0.010 3.990 15 C -0.151 4.151 16 C -0.048 4.048 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.131 0.869 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.228 0.772 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.345 21.676 13.356 26.499 hybrid contribution -0.140 -0.128 -0.372 0.418 sum 7.204 21.549 12.984 26.169 Atomic orbital electron populations 1.21817 0.94701 1.00626 1.00003 1.21781 0.97127 0.94025 0.98571 1.22016 1.00433 0.97235 1.01387 1.21130 0.97864 0.78608 0.95709 0.91661 1.22121 1.01924 0.99172 0.94196 1.21523 1.00976 0.95177 0.97980 1.21919 1.01180 0.96652 0.97632 1.21605 1.00323 0.93749 0.85561 1.47276 1.66199 1.09464 1.13666 1.15931 0.78607 0.82367 0.82910 1.90929 1.58396 1.56774 1.39245 1.45661 1.71195 1.06891 1.16401 1.21477 0.98849 0.94536 0.84152 1.21697 1.01214 0.91060 1.01107 1.19492 0.96004 0.96866 0.92473 1.21101 1.44211 0.90749 0.99889 0.91046 1.25028 0.94905 0.94694 0.98863 1.69915 1.46570 1.05448 1.32345 0.86774 0.78318 0.80122 0.84084 1.20247 1.21384 1.18858 0.95476 0.93468 0.92113 0.86874 0.93269 0.92664 0.93223 0.90910 0.90913 0.91836 0.91939 0.91399 0.90767 0.91444 0.90276 0.77238 0.92003 0.92136 0.92277 0.92244 0.96302 0.96750 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 6.67 37.16 0.25 -1.23 16 2 C -0.10 -1.14 2.16 -90.62 -0.20 -1.33 16 3 C -0.15 -1.43 9.03 37.16 0.34 -1.10 16 4 C 0.17 1.74 2.64 -67.60 -0.18 1.56 16 5 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 6 C -0.14 -1.13 4.70 -26.58 -0.12 -1.26 16 7 C -0.12 -0.82 5.89 -26.66 -0.16 -0.98 16 8 C -0.14 -0.98 6.08 -26.61 -0.16 -1.14 16 9 C 0.11 0.94 6.40 -3.71 -0.02 0.92 16 10 N -0.63 -7.06 2.88 -170.92 -0.49 -7.55 16 11 C 0.70 10.14 7.11 -86.93 -0.62 9.52 16 12 O -0.57 -9.79 9.92 5.29 0.05 -9.74 16 13 N -0.74 -10.51 5.47 -65.22 -0.36 -10.87 16 14 C 0.13 2.23 5.68 -4.04 -0.02 2.21 16 15 C -0.11 -2.11 5.27 -26.74 -0.14 -2.26 16 16 C -0.01 -0.24 4.04 -27.89 -0.11 -0.36 16 17 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 21 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 25 H 0.03 0.30 7.05 -51.93 -0.37 -0.06 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.91 5.50 -51.93 -0.29 0.62 16 28 H 0.11 1.68 5.79 -52.83 -0.31 1.37 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.41 6.61 -51.93 -0.34 0.06 16 32 H 0.07 0.53 6.84 -51.93 -0.36 0.17 16 33 H 0.07 0.70 6.34 -51.93 -0.33 0.37 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.63 5.62 -51.92 -0.29 0.34 16 40 H 0.39 4.65 5.94 -40.82 -0.24 4.41 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 46 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 347.85 15.07 5.24 5.24 Total: -1.00 -31.44 347.85 -9.40 -40.84 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -8.37 Total: 0.67 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.58 Total: -8.67 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.07 Total: -45.49 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.05 Total: -9.74 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.44 -9.40 -40.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172335328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.681 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds