Wall clock time and date at job start Tue Mar 31 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47553 * 2 1 4 4 C 1.53010 * 109.46791 * 119.99730 * 2 1 3 5 5 C 1.53006 * 109.46981 * 64.99925 * 4 2 1 6 6 N 1.46895 * 109.46810 * 178.07121 * 5 4 2 7 7 C 1.46904 * 110.99891 * 287.89144 * 6 5 4 8 8 C 1.50693 * 109.47589 * 298.48342 * 7 6 5 9 9 H 1.08007 * 119.99821 * 4.76193 * 8 7 6 10 10 C 1.37876 * 120.00357 * 184.75917 * 8 7 6 11 11 N 1.31513 * 120.00087 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 119.99908 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46893 * 90.00180 * 12 10 8 14 14 H 1.48497 * 109.46870 * 210.00321 * 12 10 8 15 15 H 1.48499 * 109.46946 * 330.00348 * 12 10 8 16 16 C 1.46904 * 111.00027 * 163.94283 * 6 5 4 17 17 C 1.53004 * 109.47077 * 190.00099 * 16 6 5 18 18 N 1.46498 * 109.46724 * 180.02562 * 17 16 6 19 19 C 1.46762 * 124.35393 * 89.99960 * 18 17 16 20 20 C 1.54483 * 105.54839 * 197.07435 * 19 18 17 21 21 C 1.54625 * 101.76728 * 334.53811 * 20 19 18 22 22 C 1.34630 * 124.46464 * 270.02019 * 18 17 16 23 23 O 1.21277 * 124.90622 * 359.56081 * 22 18 17 24 24 H 1.08998 * 109.47599 * 300.00464 * 1 2 3 25 25 H 1.09004 * 109.46808 * 60.00647 * 1 2 3 26 26 H 1.09001 * 109.47506 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47400 * 239.99232 * 2 1 3 28 28 H 1.08995 * 109.47541 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46535 * 299.99520 * 3 2 1 30 30 H 1.08998 * 109.47047 * 59.99197 * 3 2 1 31 31 H 1.08991 * 109.46891 * 305.00064 * 4 2 1 32 32 H 1.08993 * 109.46916 * 184.99863 * 4 2 1 33 33 H 1.08999 * 109.46703 * 58.06912 * 5 4 2 34 34 H 1.09000 * 109.46730 * 298.07026 * 5 4 2 35 35 H 1.08998 * 109.47001 * 58.48935 * 7 6 5 36 36 H 1.09005 * 109.47073 * 178.48114 * 7 6 5 37 37 H 0.96995 * 120.00126 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.46921 * 69.99751 * 16 6 5 39 39 H 1.08996 * 109.46465 * 309.99614 * 16 6 5 40 40 H 1.08991 * 109.47315 * 59.99608 * 17 16 6 41 41 H 1.09002 * 109.46701 * 299.99731 * 17 16 6 42 42 H 1.08996 * 110.24638 * 78.02894 * 19 18 17 43 43 H 1.09000 * 110.24425 * 316.11574 * 19 18 17 44 44 H 1.08996 * 110.96988 * 92.66168 * 20 19 18 45 45 H 1.08998 * 110.96722 * 216.41914 * 20 19 18 46 46 H 1.08995 * 110.48587 * 143.47601 * 21 20 19 47 47 H 1.09000 * 110.48799 * 266.12429 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6351 -2.1955 1.1881 6 7 2.1641 -2.8978 2.3649 7 6 3.6206 -3.0635 2.2683 8 6 3.9522 -3.8966 1.0571 9 1 3.1678 -4.2014 0.3801 10 6 5.2569 -4.2697 0.8132 11 7 5.5463 -4.9963 -0.2441 12 14 6.6137 -3.7420 1.9837 13 1 6.7799 -4.7685 3.0438 14 1 7.8863 -3.5956 1.2325 15 1 6.2534 -2.4423 2.6053 16 6 1.4978 -4.1942 2.5479 17 6 1.8882 -4.7809 3.9060 18 7 1.2242 -6.0740 4.0882 19 6 1.7943 -7.3628 3.6785 20 6 0.6080 -8.3521 3.6566 21 6 -0.3648 -7.7004 4.6664 22 6 0.0125 -6.2354 4.6524 23 8 -0.6764 -5.3365 5.0861 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9562 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6053 -0.2617 2.1370 32 1 3.1262 -0.6444 1.2953 33 1 2.0412 -2.6464 0.2827 34 1 0.5479 -2.2735 1.1767 35 1 4.0923 -2.0852 2.1766 36 1 3.9897 -3.5623 3.1645 37 1 6.4641 -5.2591 -0.4155 38 1 1.8058 -4.8761 1.7554 39 1 0.4174 -4.0559 2.5089 40 1 1.5803 -4.0990 4.6985 41 1 2.9687 -4.9191 3.9450 42 1 2.5445 -7.6894 4.3985 43 1 2.2357 -7.2812 2.6852 44 1 0.1620 -8.4045 2.6634 45 1 0.9181 -9.3405 3.9959 46 1 -1.3968 -7.8316 4.3410 47 1 -0.2210 -8.1219 5.6612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173541632.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:06 Heat of formation + Delta-G solvation = -48.749654 kcal Electronic energy + Delta-G solvation = -23270.656036 eV Core-core repulsion = 20066.707977 eV Total energy + Delta-G solvation = -3203.948059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10852 -37.71011 -36.19101 -35.53998 -32.92317 -32.26242 -29.26279 -28.26819 -27.39701 -26.91299 -26.06686 -23.19569 -22.41526 -21.70943 -19.75961 -19.30041 -18.97992 -16.97852 -16.59495 -16.28556 -15.26927 -15.12269 -14.74209 -14.35208 -14.19082 -13.65456 -13.59446 -13.51855 -13.09969 -12.96771 -12.82408 -12.51194 -12.36904 -12.17829 -11.93570 -11.78952 -11.49224 -11.39415 -11.17601 -11.02144 -10.87173 -10.76135 -10.51842 -10.38690 -10.28195 -10.18144 -9.96435 -9.72682 -9.59460 -9.48771 -8.64696 -8.41264 -7.21063 -6.16565 -4.15638 2.78253 3.20782 3.26513 3.30636 3.34519 4.33605 4.45317 4.54528 4.84765 4.86586 5.11978 5.17173 5.24193 5.29283 5.38424 5.50263 5.55094 5.61464 5.77196 5.81264 5.82163 5.84284 5.89733 5.98136 6.02065 6.03514 6.09693 6.13655 6.21568 6.27525 6.35826 6.42087 6.55385 6.61382 6.70583 6.75013 6.87966 6.92805 6.96237 7.09505 7.41476 7.53650 8.02508 8.07982 8.39106 8.40648 8.85812 9.46659 10.96159 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.005969 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.135154 B = 4689.560348 C = 6612.764828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.103 4.103 5 C 0.060 3.940 6 N -0.534 5.534 7 C 0.149 3.851 8 C -0.546 4.546 9 H 0.074 0.926 10 C 0.074 3.926 11 N -0.898 5.898 12 Si 0.874 3.126 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.264 1.264 16 C 0.050 3.950 17 C 0.132 3.868 18 N -0.611 5.611 19 C 0.098 3.902 20 C -0.131 4.131 21 C -0.155 4.155 22 C 0.511 3.489 23 O -0.539 6.539 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.031 0.969 36 H 0.024 0.976 37 H 0.263 0.737 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.003 -1.363 5.131 9.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.141 4.141 5 C -0.068 4.068 6 N -0.257 5.257 7 C 0.022 3.978 8 C -0.585 4.585 9 H 0.092 0.908 10 C -0.129 4.129 11 N -0.536 5.536 12 Si 0.701 3.299 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.188 1.188 16 C -0.079 4.079 17 C 0.010 3.990 18 N -0.345 5.345 19 C -0.026 4.026 20 C -0.169 4.169 21 C -0.195 4.195 22 C 0.299 3.701 23 O -0.417 6.417 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.116 0.884 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.262 -0.603 5.673 10.040 hybrid contribution 1.208 -0.420 -0.344 1.324 sum -7.054 -1.022 5.329 8.899 Atomic orbital electron populations 1.21865 0.95833 1.01666 1.00878 1.21100 0.95377 0.95837 0.99323 1.21811 1.01027 0.96314 1.00962 1.21533 1.01315 0.94915 0.96377 1.22005 0.97641 0.93712 0.93430 1.62352 1.06439 1.18184 1.38768 1.20259 0.84558 0.96792 0.96180 1.21628 0.94561 1.32988 1.09331 0.90763 1.24933 0.98584 0.94339 0.95011 1.69921 1.19545 1.37061 1.27117 0.86877 0.81783 0.79966 0.81299 1.20248 1.21299 1.18803 1.22190 0.97350 0.91929 0.96477 1.21402 0.97378 0.81906 0.98303 1.48364 1.18909 1.07638 1.59594 1.22127 0.96038 0.82495 1.01912 1.22595 0.95478 0.98793 1.00062 1.22317 1.01627 0.93811 1.01742 1.20957 0.81098 0.91082 0.76973 1.90701 1.54942 1.47541 1.48477 0.93009 0.93481 0.92542 0.91222 0.92754 0.93304 0.93044 0.92343 0.91618 0.92988 0.92936 0.95137 0.95846 0.92705 0.93072 0.92747 0.90098 0.89769 0.91191 0.89463 0.90000 0.89399 0.88412 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.95 37.16 0.33 -1.57 16 2 C -0.10 -1.43 2.92 -90.62 -0.26 -1.69 16 3 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 4 C -0.10 -1.77 4.77 -26.72 -0.13 -1.90 16 5 C 0.06 1.16 4.51 -3.82 -0.02 1.14 16 6 N -0.53 -10.96 4.67 -236.07 -1.10 -12.06 16 7 C 0.15 3.41 3.83 -4.98 -0.02 3.39 16 8 C -0.55 -14.38 7.89 -34.44 -0.27 -14.65 16 9 H 0.07 2.15 6.20 -52.48 -0.33 1.82 16 10 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -26.23 13.96 55.43 0.77 -25.46 16 12 Si 0.87 20.65 27.38 -169.99 -4.65 16.00 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.26 -6.05 6.68 56.52 0.38 -5.67 16 16 C 0.05 0.98 5.09 -3.82 -0.02 0.96 16 17 C 0.13 2.36 5.87 -4.04 -0.02 2.33 16 18 N -0.61 -9.59 2.94 -172.36 -0.51 -10.09 16 19 C 0.10 1.22 7.34 -3.12 -0.02 1.20 16 20 C -0.13 -1.24 7.18 -25.10 -0.18 -1.42 16 21 C -0.15 -1.65 6.86 -26.74 -0.18 -1.84 16 22 C 0.51 8.10 8.03 -10.77 -0.09 8.02 16 23 O -0.54 -10.68 17.60 5.56 0.10 -10.58 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.77 6.61 -51.93 -0.34 0.42 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 1.24 6.67 -51.93 -0.35 0.89 16 33 H 0.05 1.14 6.19 -51.93 -0.32 0.82 16 34 H 0.05 0.94 6.32 -51.93 -0.33 0.61 16 35 H 0.03 0.72 6.01 -51.93 -0.31 0.41 16 36 H 0.02 0.54 5.53 -51.93 -0.29 0.25 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.05 1.11 6.55 -51.93 -0.34 0.77 16 39 H 0.05 1.06 7.86 -51.93 -0.41 0.65 16 40 H 0.08 1.50 7.93 -51.93 -0.41 1.09 16 41 H 0.08 1.55 6.50 -51.93 -0.34 1.22 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 361.86 15.07 5.45 5.45 Total: -1.00 -30.71 361.86 -8.99 -39.70 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.42 Total: 2.64 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -0.64 Total: -5.61 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: -0.83 Total: -47.61 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.10 Total: -10.58 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.65 Total: 16.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.71 -8.99 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173541632.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.048 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds