Wall clock time and date at job start Tue Mar 31 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 C 1.53000 * 109.46871 * 119.99569 * 2 1 3 5 5 C 1.53002 * 109.46995 * 65.00194 * 4 2 1 6 6 H 1.09003 * 110.91541 * 308.90126 * 5 4 2 7 7 C 1.55153 * 111.00503 * 184.99816 * 5 4 2 8 8 C 1.54323 * 103.10236 * 206.33608 * 7 5 4 9 9 N 1.47486 * 107.03754 * 22.24109 * 8 7 5 10 10 C 1.34778 * 125.59413 * 181.00840 * 9 8 7 11 11 O 1.21583 * 119.99808 * 180.02562 * 10 9 8 12 12 N 1.34769 * 120.00035 * 0.02562 * 10 9 8 13 13 C 1.46502 * 120.00267 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47219 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46672 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.46705 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00281 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99898 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99779 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00160 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46685 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.47159 * 119.99890 * 20 18 16 23 23 H 1.48497 * 109.47302 * 240.00149 * 20 18 16 24 24 C 1.47428 * 108.75727 * 1.02624 * 9 8 7 25 25 H 1.09001 * 109.47552 * 300.00594 * 1 2 3 26 26 H 1.09003 * 109.46808 * 60.00409 * 1 2 3 27 27 H 1.08996 * 109.47176 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46953 * 239.99871 * 2 1 3 29 29 H 1.08994 * 109.47276 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46988 * 299.99480 * 3 2 1 31 31 H 1.09001 * 109.47435 * 59.99335 * 3 2 1 32 32 H 1.08994 * 109.47244 * 305.00400 * 4 2 1 33 33 H 1.08994 * 109.47152 * 184.99728 * 4 2 1 34 34 H 1.09002 * 110.72030 * 324.78875 * 7 5 4 35 35 H 1.09003 * 110.72184 * 87.88526 * 7 5 4 36 36 H 1.09000 * 109.88693 * 141.69901 * 8 7 5 37 37 H 1.09005 * 109.88012 * 262.86516 * 8 7 5 38 38 H 0.97001 * 120.00405 * 359.97438 * 12 10 9 39 39 H 1.09003 * 109.46730 * 299.99796 * 13 12 10 40 40 H 1.08999 * 109.47248 * 59.99009 * 13 12 10 41 41 H 1.09000 * 109.46838 * 299.98973 * 14 13 12 42 42 H 1.08992 * 109.47387 * 59.99575 * 14 13 12 43 43 H 1.08999 * 109.47409 * 299.99163 * 15 14 13 44 44 H 1.08992 * 109.47544 * 59.99692 * 15 14 13 45 45 H 0.97003 * 119.99983 * 180.02562 * 19 18 16 46 46 H 1.09000 * 110.36462 * 217.05803 * 24 9 8 47 47 H 1.08998 * 110.36847 * 94.73011 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 1 0.5693 -2.2981 0.9844 7 6 2.0252 -2.9340 2.4956 8 6 2.1950 -4.3967 2.0338 9 7 2.4549 -4.3642 0.5824 10 6 2.6410 -5.4418 -0.2055 11 8 2.8495 -5.2967 -1.3945 12 7 2.5961 -6.6800 0.3246 13 6 2.7991 -7.8513 -0.5317 14 6 2.6982 -9.1235 0.3121 15 6 2.9096 -10.3467 -0.5824 16 6 2.8109 -11.5999 0.2488 17 1 2.6173 -11.5308 1.3090 18 6 2.9677 -12.8347 -0.3443 19 7 3.2030 -12.9188 -1.6355 20 14 2.8461 -14.3881 0.6861 21 1 2.5767 -14.0240 2.1004 22 1 1.7398 -15.2361 0.1745 23 1 4.1246 -15.1388 0.6027 24 6 2.4777 -2.9593 0.1362 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 1.6053 -0.2617 2.1369 33 1 3.1262 -0.6443 1.2952 34 1 2.9620 -2.5442 2.8940 35 1 1.2296 -2.8533 3.2362 36 1 3.0368 -4.8543 2.5536 37 1 1.2825 -4.9576 2.2361 38 1 2.4302 -6.7958 1.2732 39 1 2.0351 -7.8698 -1.3090 40 1 3.7853 -7.7978 -0.9929 41 1 3.4620 -9.1053 1.0895 42 1 1.7119 -9.1768 0.7728 43 1 2.1456 -10.3648 -1.3597 44 1 3.8957 -10.2937 -1.0435 45 1 3.3130 -13.7875 -2.0528 46 1 2.0254 -2.8675 -0.8513 47 1 3.5002 -2.5821 0.1226 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174726460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:57 Heat of formation + Delta-G solvation = -67.445194 kcal Electronic energy + Delta-G solvation = -21941.293947 eV Core-core repulsion = 18736.535189 eV Total energy + Delta-G solvation = -3204.758758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26663 -38.39571 -36.17620 -35.28155 -33.30495 -32.12379 -30.85372 -29.56846 -27.52624 -27.10128 -25.78760 -23.63653 -22.63726 -21.08659 -20.56614 -20.05205 -19.51908 -17.91589 -16.76862 -16.30896 -15.67531 -15.42571 -14.91084 -14.64999 -14.46717 -14.36812 -13.99223 -13.82038 -13.45344 -12.99924 -12.93210 -12.62057 -12.53419 -12.30073 -12.25141 -11.91554 -11.76217 -11.64216 -11.44671 -11.31401 -10.90981 -10.84804 -10.73172 -10.69864 -10.65154 -10.55019 -10.04669 -9.84060 -9.42466 -9.09421 -8.89129 -8.42605 -8.36045 -6.00472 -4.03410 2.71334 3.30692 3.38069 3.38929 3.41645 4.00106 4.27277 4.30121 4.39041 4.45908 4.60754 4.69110 4.80079 5.00735 5.04941 5.15635 5.28063 5.34924 5.35259 5.36031 5.44052 5.48251 5.51862 5.56768 5.62831 5.66249 5.72446 5.76351 5.84221 5.84919 5.89374 6.03411 6.08105 6.19922 6.21854 6.57651 6.65206 6.88040 7.05024 7.17309 7.66019 7.78859 7.98761 8.13891 8.39714 8.79134 9.03537 9.60597 11.10854 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045219 B = 0.002313 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.053496 B =12100.219637 C =12432.453095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.147 4.147 4 C -0.101 4.101 5 C -0.105 4.105 6 H 0.088 0.912 7 C -0.125 4.125 8 C 0.099 3.901 9 N -0.643 5.643 10 C 0.717 3.283 11 O -0.591 6.591 12 N -0.739 5.739 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.023 3.977 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.132 3.868 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.393 0.607 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.076 0.924 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.981 27.726 9.254 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C -0.205 4.205 4 C -0.139 4.139 5 C -0.124 4.124 6 H 0.106 0.894 7 C -0.163 4.163 8 C -0.025 4.025 9 N -0.383 5.383 10 C 0.419 3.581 11 O -0.470 6.470 12 N -0.394 5.394 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.009 3.991 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.772 27.590 8.154 29.016 hybrid contribution -0.124 -1.065 1.000 1.466 sum -3.897 26.526 9.154 28.330 Atomic orbital electron populations 1.21900 0.95237 1.01937 1.01608 1.21161 0.96010 0.96171 0.98627 1.21836 1.00962 0.95994 1.01667 1.21582 1.01070 0.93195 0.98083 1.22500 1.00621 0.94501 0.94774 0.89360 1.22661 1.02494 0.93712 0.97464 1.22064 1.00903 0.98019 0.81481 1.47695 1.76871 1.05494 1.08191 1.15541 0.78206 0.79921 0.84405 1.90916 1.57222 1.85097 1.13731 1.45392 1.76965 1.04622 1.12388 1.21519 1.01411 0.82744 0.93172 1.21885 1.00796 0.93974 0.99124 1.19035 0.97539 0.90213 0.94634 1.21245 1.48833 0.91013 0.94846 0.92602 1.25042 0.95323 0.99249 0.94954 1.69981 1.49072 1.24451 1.09743 0.86522 0.77630 0.83310 0.80435 1.19780 1.21019 1.21012 1.22083 0.99483 0.79279 0.98297 0.92795 0.92826 0.92358 0.90875 0.92698 0.92749 0.92806 0.91400 0.91514 0.90470 0.90063 0.91544 0.91582 0.77353 0.91962 0.91957 0.92801 0.92801 0.96215 0.96221 0.92994 0.90585 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.97 37.16 0.33 -0.57 16 2 C -0.10 -0.62 2.87 -90.62 -0.26 -0.88 16 3 C -0.15 -0.81 9.19 37.16 0.34 -0.47 16 4 C -0.10 -0.58 4.19 -26.73 -0.11 -0.70 16 5 C -0.10 -0.75 2.89 -88.47 -0.26 -1.00 16 6 H 0.09 0.66 6.31 -51.93 -0.33 0.33 16 7 C -0.13 -0.80 6.41 -24.90 -0.16 -0.96 16 8 C 0.10 0.87 6.18 -2.81 -0.02 0.85 16 9 N -0.64 -8.11 3.34 -175.86 -0.59 -8.70 16 10 C 0.72 12.12 8.49 -86.92 -0.74 11.38 16 11 O -0.59 -12.47 16.60 5.29 0.09 -12.38 16 12 N -0.74 -11.72 5.52 -65.23 -0.36 -12.08 16 13 C 0.13 2.52 5.67 -4.04 -0.02 2.49 16 14 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 20 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 24 C 0.13 1.39 5.80 -2.52 -0.01 1.37 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.38 6.42 -51.93 -0.33 0.05 16 28 H 0.07 0.53 7.55 -51.93 -0.39 0.13 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.39 7.96 -51.93 -0.41 -0.03 16 34 H 0.08 0.44 8.04 -51.93 -0.42 0.03 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.39 5.15 7.46 -40.82 -0.30 4.84 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 47 H 0.06 0.65 7.91 -51.93 -0.41 0.23 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -33.31 372.85 -10.01 -43.32 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.89 Total: -2.00 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.60 Total: -4.08 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.21 Total: -47.09 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.31 -10.01 -43.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174726460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.125 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds