Wall clock time and date at job start Tue Mar 31 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47217 * 2 1 4 4 C 1.53000 * 109.46912 * 120.00207 * 2 1 3 5 5 C 1.52996 * 109.47026 * 174.99860 * 4 2 1 6 6 H 1.08999 * 110.91723 * 57.44709 * 5 4 2 7 7 C 1.55157 * 111.00529 * 181.34761 * 5 4 2 8 8 C 1.54335 * 103.01921 * 153.37926 * 7 5 4 9 9 N 1.47016 * 107.26758 * 338.14280 * 8 7 5 10 10 C 1.34776 * 125.64788 * 178.84258 * 9 8 7 11 11 O 1.21593 * 120.00309 * 179.69309 * 10 9 8 12 12 N 1.34778 * 119.99899 * 359.69916 * 10 9 8 13 13 C 1.46506 * 119.99944 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46957 * 179.97438 * 13 12 10 15 15 C 1.53008 * 109.46812 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46847 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00138 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99722 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00073 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 119.99815 * 20 18 16 23 23 H 1.48498 * 109.47295 * 240.00422 * 20 18 16 24 24 C 1.47419 * 108.70624 * 358.58723 * 9 8 7 25 25 H 1.08996 * 109.46998 * 300.00251 * 1 2 3 26 26 H 1.09000 * 109.46869 * 59.99801 * 1 2 3 27 27 H 1.09000 * 109.47302 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47085 * 239.99853 * 2 1 3 29 29 H 1.09003 * 109.46704 * 59.99929 * 3 2 1 30 30 H 1.08996 * 109.47308 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47363 * 299.99896 * 3 2 1 32 32 H 1.09000 * 109.46937 * 55.00057 * 4 2 1 33 33 H 1.08995 * 109.47324 * 295.00023 * 4 2 1 34 34 H 1.08990 * 110.72265 * 271.94138 * 7 5 4 35 35 H 1.09006 * 110.71681 * 35.04073 * 7 5 4 36 36 H 1.09002 * 109.98909 * 218.66629 * 8 7 5 37 37 H 1.09008 * 109.77773 * 97.50307 * 8 7 5 38 38 H 0.96998 * 120.00160 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.46635 * 60.00027 * 13 12 10 40 40 H 1.08994 * 109.47340 * 300.00185 * 13 12 10 41 41 H 1.09000 * 109.47115 * 60.00701 * 14 13 12 42 42 H 1.08994 * 109.47558 * 300.00433 * 14 13 12 43 43 H 1.08996 * 109.46961 * 60.00901 * 15 14 13 44 44 H 1.08994 * 109.47402 * 300.00515 * 15 14 13 45 45 H 0.97000 * 119.99651 * 0.02562 * 19 18 16 46 46 H 1.08998 * 110.37452 * 143.19034 * 24 9 8 47 47 H 1.09003 * 110.36249 * 265.52227 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1880 6 1 4.0225 0.1538 1.0961 7 6 4.1180 -1.5883 2.4241 8 6 5.4376 -2.1928 1.8997 9 7 5.3352 -2.2596 0.4346 10 6 6.2933 -2.7087 -0.4001 11 8 6.0963 -2.7237 -1.5999 12 7 7.4698 -3.1412 0.0950 13 6 8.5111 -3.6299 -0.8123 14 6 9.7359 -4.0562 -0.0005 15 6 10.8237 -4.5660 -0.9482 16 6 12.0298 -4.9865 -0.1485 17 1 12.0213 -4.8992 0.9280 18 6 13.1442 -5.4825 -0.7911 19 7 13.1548 -5.5882 -2.1020 20 14 14.6396 -6.0030 0.2000 21 1 14.3760 -5.7851 1.6451 22 1 14.9166 -7.4420 -0.0407 23 1 15.8148 -5.1963 -0.2164 24 6 4.0086 -1.7598 0.0302 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1585 2.1369 34 1 4.3071 -0.8982 3.2462 35 1 3.4304 -2.3755 2.7336 36 1 5.5768 -3.1940 2.3076 37 1 6.2744 -1.5547 2.1842 38 1 7.6272 -3.1290 1.0521 39 1 8.7924 -2.8357 -1.5038 40 1 8.1322 -4.4835 -1.3742 41 1 9.4549 -4.8503 0.6913 42 1 10.1148 -3.2024 0.5611 43 1 11.1046 -3.7716 -1.6395 44 1 10.4451 -5.4197 -1.5101 45 1 12.3787 -5.3168 -2.6167 46 1 4.0826 -1.1970 -0.9004 47 1 3.3089 -2.5881 -0.0811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174726471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:02 Heat of formation + Delta-G solvation = -71.762093 kcal Electronic energy + Delta-G solvation = -21998.016640 eV Core-core repulsion = 18793.070687 eV Total energy + Delta-G solvation = -3204.945953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.34439 -38.45543 -36.21627 -35.42078 -33.56924 -32.18631 -30.78696 -29.58775 -27.53168 -26.95092 -25.61042 -23.59954 -22.64612 -21.17266 -20.81450 -20.10232 -19.56243 -17.99526 -16.89587 -16.66122 -15.75004 -15.47126 -14.94325 -14.70279 -14.43603 -14.09708 -13.90284 -13.74183 -13.52167 -13.08037 -13.03648 -12.83260 -12.63284 -12.55008 -12.26362 -11.94710 -11.77964 -11.61547 -11.49253 -11.33435 -10.86051 -10.84610 -10.77624 -10.76364 -10.66475 -10.20430 -10.12245 -9.98796 -9.78767 -8.95771 -8.56115 -8.49003 -8.31952 -6.35781 -4.05362 2.65944 3.32364 3.43705 3.48203 3.60916 3.95970 4.23062 4.26163 4.36564 4.54834 4.58644 4.67643 4.77278 4.97068 5.02467 5.12461 5.26555 5.32046 5.33456 5.41446 5.41755 5.45764 5.49695 5.54501 5.58959 5.61475 5.65303 5.71538 5.73998 5.82564 5.87353 6.00617 6.05471 6.08939 6.15682 6.45972 6.51748 6.76828 6.89937 7.10505 7.38261 7.50637 8.07213 8.20201 8.46813 8.72278 8.88748 9.67293 11.05123 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044966 B = 0.002333 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.539304 B =11999.339562 C =12351.797833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.149 4.149 4 C -0.101 4.101 5 C -0.104 4.104 6 H 0.088 0.912 7 C -0.125 4.125 8 C 0.098 3.902 9 N -0.642 5.642 10 C 0.718 3.282 11 O -0.591 6.591 12 N -0.739 5.739 13 C 0.134 3.866 14 C -0.113 4.113 15 C 0.010 3.990 16 C -0.603 4.603 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.913 5.913 20 Si 1.075 2.925 21 H -0.290 1.290 22 H -0.287 1.287 23 H -0.287 1.287 24 C 0.131 3.869 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.394 0.606 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.270 0.730 46 H 0.076 0.924 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.166 12.072 10.793 29.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.207 4.207 4 C -0.139 4.139 5 C -0.123 4.123 6 H 0.106 0.894 7 C -0.163 4.163 8 C -0.025 4.025 9 N -0.381 5.381 10 C 0.420 3.580 11 O -0.470 6.470 12 N -0.394 5.394 13 C 0.011 3.989 14 C -0.151 4.151 15 C -0.027 4.027 16 C -0.641 4.641 17 H 0.068 0.932 18 C -0.191 4.191 19 N -0.550 5.550 20 Si 0.904 3.096 21 H -0.216 1.216 22 H -0.213 1.213 23 H -0.213 1.213 24 C 0.008 3.992 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -23.683 11.390 9.693 28.010 hybrid contribution -1.432 0.612 0.670 1.696 sum -25.115 12.002 10.363 29.702 Atomic orbital electron populations 1.21838 0.95234 1.01698 1.01690 1.21173 0.95681 0.96557 0.98606 1.21892 1.01307 0.95849 1.01623 1.21580 0.93319 1.00887 0.98120 1.22477 0.96144 0.99157 0.94553 0.89420 1.22666 0.95906 0.99966 0.97761 1.21984 0.98745 1.00886 0.80893 1.47572 1.15769 1.68621 1.06156 1.15527 0.79797 0.78237 0.84458 1.90919 1.80562 1.62370 1.13104 1.45358 1.14619 1.68698 1.10693 1.21509 0.86478 0.98666 0.92225 1.21747 0.93993 1.00174 0.99173 1.19164 0.93091 0.95627 0.94845 1.22072 1.00704 1.46829 0.94507 0.93217 1.25874 1.01463 0.94655 0.97089 1.70714 1.33205 1.45156 1.05877 0.83460 0.75119 0.76699 0.74332 1.21575 1.21340 1.21335 1.22090 0.82693 0.96436 0.97966 0.92796 0.92729 0.92707 0.90851 0.92793 0.92389 0.92802 0.91530 0.91379 0.90004 0.90444 0.91598 0.91642 0.77286 0.92019 0.92011 0.92613 0.92616 0.97128 0.97131 0.91932 0.90540 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.19 37.16 0.34 -0.47 16 2 C -0.10 -0.63 2.84 -90.62 -0.26 -0.89 16 3 C -0.15 -0.92 8.97 37.16 0.33 -0.59 16 4 C -0.10 -0.58 4.20 -26.73 -0.11 -0.69 16 5 C -0.10 -0.74 2.83 -88.47 -0.25 -0.99 16 6 H 0.09 0.65 6.55 -51.93 -0.34 0.31 16 7 C -0.13 -0.79 6.42 -24.89 -0.16 -0.95 16 8 C 0.10 0.86 6.15 -3.06 -0.02 0.84 16 9 N -0.64 -8.06 3.33 -176.23 -0.59 -8.65 16 10 C 0.72 12.09 8.49 -86.92 -0.74 11.35 16 11 O -0.59 -12.41 16.60 5.28 0.09 -12.32 16 12 N -0.74 -11.72 5.52 -65.22 -0.36 -12.08 16 13 C 0.13 2.51 5.67 -4.04 -0.02 2.49 16 14 C -0.11 -2.29 5.27 -26.73 -0.14 -2.43 16 15 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 16 C -0.60 -17.28 9.11 -34.44 -0.31 -17.59 16 17 H 0.05 1.39 7.74 -52.48 -0.41 0.99 16 18 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 19 N -0.91 -28.41 13.65 55.43 0.76 -27.66 16 20 Si 1.08 25.56 29.90 -169.99 -5.08 20.47 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 24 C 0.13 1.37 5.53 -2.53 -0.01 1.36 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.53 7.23 -51.93 -0.38 0.15 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.44 8.04 -51.93 -0.42 0.02 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.39 5.17 7.46 -40.82 -0.30 4.87 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 44 H 0.01 0.28 8.01 -51.93 -0.42 -0.13 16 45 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 46 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 47 H 0.06 0.65 8.00 -51.93 -0.42 0.23 16 LS Contribution 371.33 15.07 5.60 5.60 Total: -1.00 -34.04 371.33 -10.00 -44.04 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.85 Total: -1.28 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.57 Total: -8.13 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.19 Total: -48.38 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.04 -10.00 -44.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174726471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.718 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds