Wall clock time and date at job start Tue Mar 31 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47157 * 2 1 4 4 C 1.53000 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.49701 * 304.99623 * 4 3 2 6 6 C 1.53045 * 109.49604 * 184.93144 * 4 3 2 7 7 C 1.53041 * 109.53720 * 178.71503 * 6 4 3 8 8 C 1.53194 * 109.33505 * 61.31795 * 7 6 4 9 9 N 1.46924 * 108.77869 * 305.37751 * 8 7 6 10 10 C 1.34772 * 120.63315 * 233.58949 * 9 8 7 11 11 O 1.21583 * 120.00327 * 174.79221 * 10 9 8 12 12 N 1.34786 * 119.99995 * 354.79409 * 10 9 8 13 13 C 1.46497 * 120.00066 * 184.98207 * 12 10 9 14 14 C 1.52995 * 109.47219 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47275 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46921 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00323 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99815 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00147 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00012 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47015 * 89.99854 * 20 18 16 22 22 H 1.48496 * 109.47036 * 210.00091 * 20 18 16 23 23 H 1.48507 * 109.46851 * 330.00019 * 20 18 16 24 24 C 1.46923 * 118.73908 * 53.61092 * 9 8 7 25 25 H 1.09001 * 109.47230 * 60.00270 * 1 2 3 26 26 H 1.09005 * 109.47571 * 300.00380 * 1 2 3 27 27 H 1.08999 * 109.47507 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46514 * 119.99518 * 2 1 3 29 29 H 1.08996 * 109.47029 * 239.99514 * 2 1 3 30 30 H 1.09001 * 109.46563 * 299.99495 * 3 2 1 31 31 H 1.08996 * 109.47094 * 59.99551 * 3 2 1 32 32 H 1.08994 * 109.46221 * 298.70523 * 6 4 3 33 33 H 1.08999 * 109.45628 * 58.66246 * 6 4 3 34 34 H 1.09000 * 109.47371 * 301.36855 * 7 6 4 35 35 H 1.08994 * 109.52087 * 181.30197 * 7 6 4 36 36 H 1.09010 * 109.58340 * 185.59220 * 8 7 6 37 37 H 1.08997 * 109.70585 * 65.23841 * 8 7 6 38 38 H 0.96998 * 119.99587 * 4.98600 * 12 10 9 39 39 H 1.08999 * 109.47437 * 300.00017 * 13 12 10 40 40 H 1.09005 * 109.47138 * 60.00100 * 13 12 10 41 41 H 1.08999 * 109.46813 * 300.00256 * 14 13 12 42 42 H 1.08999 * 109.47150 * 59.99513 * 14 13 12 43 43 H 1.08999 * 109.47290 * 299.99818 * 15 14 13 44 44 H 1.09005 * 109.47229 * 59.99867 * 15 14 13 45 45 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.58924 * 186.60292 * 24 9 8 47 47 H 1.09001 * 109.70632 * 66.24497 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9334 0.8533 0.8426 6 6 4.0807 2.8798 0.1247 7 6 5.6108 2.8782 0.1576 8 6 6.1457 2.2854 -1.1498 9 7 5.5451 0.9593 -1.3484 10 6 6.3216 -0.1211 -1.5634 11 8 5.8200 -1.2264 -1.6319 12 7 7.6544 0.0239 -1.7026 13 6 8.4854 -1.1331 -2.0445 14 6 9.9493 -0.6992 -2.1404 15 6 10.8171 -1.9074 -2.4982 16 6 12.2590 -1.4797 -2.5933 17 1 12.5294 -0.4492 -2.4167 18 6 13.2331 -2.4042 -2.9058 19 7 14.4914 -2.0310 -2.9893 20 14 12.7653 -4.1867 -3.2119 21 1 12.4694 -4.3801 -4.6542 22 1 13.8917 -5.0692 -2.8149 23 1 11.5629 -4.5276 -2.4098 24 6 4.0818 0.8333 -1.3085 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9562 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.7370 3.4624 -0.7300 33 1 3.6977 3.3232 1.0438 34 1 5.9555 2.2758 0.9981 35 1 5.9738 3.8999 0.2692 36 1 7.2301 2.1903 -1.0912 37 1 5.8804 2.9352 -1.9836 38 1 8.0633 0.8944 -1.5762 39 1 8.3826 -1.8953 -1.2720 40 1 8.1634 -1.5412 -3.0026 41 1 10.0524 0.0631 -2.9127 42 1 10.2709 -0.2913 -1.1822 43 1 10.7141 -2.6700 -1.7262 44 1 10.4953 -2.3149 -3.4566 45 1 15.1766 -2.6813 -3.2095 46 1 3.8043 -0.2197 -1.3547 47 1 3.6441 1.3640 -2.1540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176590402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:19 Heat of formation + Delta-G solvation = -63.931722 kcal Electronic energy + Delta-G solvation = -22315.792710 eV Core-core repulsion = 19111.186307 eV Total energy + Delta-G solvation = -3204.606403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.47844 -38.23119 -35.50686 -35.46417 -33.35998 -32.73411 -31.49212 -31.00817 -27.44283 -26.52819 -25.29877 -23.18327 -22.71035 -21.23489 -20.68330 -20.45210 -19.39906 -18.08352 -16.76488 -16.32379 -15.81019 -15.40779 -14.76164 -14.71432 -14.54945 -14.36883 -14.15560 -13.95088 -13.62260 -13.31201 -13.18944 -12.77554 -12.68403 -12.40197 -12.00414 -11.91386 -11.82856 -11.55471 -11.38880 -11.23384 -11.03164 -10.88650 -10.87173 -10.77054 -10.44320 -10.18782 -9.97883 -9.79455 -9.65283 -9.21500 -8.96959 -8.54552 -8.48674 -6.05336 -4.03890 2.68257 3.29865 3.32593 3.40037 3.44938 3.94929 4.30498 4.45677 4.45821 4.51792 4.67386 4.80121 4.85960 4.89588 5.08695 5.20021 5.22108 5.28896 5.32988 5.43335 5.49561 5.50567 5.52404 5.58012 5.59813 5.70050 5.72043 5.76189 5.80501 5.84068 5.95208 6.04584 6.06241 6.13318 6.37002 6.46228 6.49042 6.72804 6.85104 6.99337 7.25050 7.38489 7.76842 8.04788 8.51253 8.70836 8.98479 9.57039 11.07858 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030578 B = 0.002744 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.457214 B =10202.095719 C =10960.640431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.110 4.110 4 C -0.104 4.104 5 H 0.075 0.925 6 C -0.113 4.113 7 C -0.135 4.135 8 C 0.111 3.889 9 N -0.633 5.633 10 C 0.705 3.295 11 O -0.593 6.593 12 N -0.742 5.742 13 C 0.132 3.868 14 C -0.112 4.112 15 C -0.011 4.011 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C 0.134 3.866 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.394 0.606 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.263 0.737 46 H 0.095 0.905 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.925 11.669 6.539 29.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.148 4.148 4 C -0.124 4.124 5 H 0.093 0.907 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.013 4.013 9 N -0.371 5.371 10 C 0.406 3.594 11 O -0.471 6.471 12 N -0.399 5.399 13 C 0.009 3.991 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.188 1.188 24 C 0.011 3.989 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.230 0.770 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.113 0.887 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.078 10.756 6.418 28.930 hybrid contribution 0.218 -0.414 -0.105 0.480 sum -25.860 10.341 6.313 28.558 Atomic orbital electron populations 1.21771 0.95981 1.01615 1.01561 1.21607 0.95700 0.96840 1.02606 1.21597 0.94013 0.97062 1.02149 1.21591 0.95343 0.96724 0.98722 0.90694 1.21556 0.95129 0.96279 1.02093 1.21921 0.96255 1.01340 0.97869 1.21621 0.97905 0.84160 0.97618 1.47258 1.06449 1.06743 1.76663 1.15905 0.81662 0.83966 0.77859 1.90892 1.73502 1.23773 1.58968 1.45515 1.05373 1.13474 1.75532 1.21513 0.90387 0.86882 1.00364 1.21699 0.91079 1.00755 1.01518 1.19501 0.95519 0.93556 0.96310 1.21098 0.89565 0.97405 1.47860 0.91029 1.25033 0.94857 0.98915 0.94720 1.69910 1.00274 1.34861 1.49188 0.86773 0.78408 0.85092 0.79023 1.20251 1.21391 1.18845 1.21521 0.78189 1.02936 0.96287 0.92823 0.92948 0.92794 0.91943 0.91516 0.91814 0.91753 0.91760 0.91717 0.91372 0.90616 0.90306 0.91370 0.77007 0.91948 0.92065 0.92212 0.92184 0.96267 0.96717 0.92716 0.88713 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.96 5.69 -26.73 -0.15 -1.12 16 3 C -0.11 -0.73 4.69 -26.73 -0.13 -0.86 16 4 C -0.10 -0.84 2.34 -90.50 -0.21 -1.05 16 5 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.11 -0.75 5.17 -26.69 -0.14 -0.89 16 7 C -0.14 -0.96 6.08 -26.61 -0.16 -1.13 16 8 C 0.11 0.94 6.39 -3.71 -0.02 0.92 16 9 N -0.63 -7.45 2.97 -178.50 -0.53 -7.98 16 10 C 0.70 11.09 8.29 -86.91 -0.72 10.37 16 11 O -0.59 -11.64 15.77 5.29 0.08 -11.56 16 12 N -0.74 -10.98 5.47 -65.23 -0.36 -11.33 16 13 C 0.13 2.28 5.68 -4.05 -0.02 2.26 16 14 C -0.11 -2.13 5.27 -26.74 -0.14 -2.28 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 16 C -0.52 -14.76 9.66 -34.44 -0.33 -15.10 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 20 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 24 C 0.13 1.37 5.33 -3.71 -0.02 1.35 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.56 6.70 -51.93 -0.35 0.21 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.64 5.65 -51.92 -0.29 0.35 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.39 4.79 5.96 -40.82 -0.24 4.54 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 44 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 46 H 0.09 1.17 5.71 -51.93 -0.30 0.87 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 363.90 15.07 5.48 5.48 Total: -1.00 -33.04 363.90 -9.83 -42.87 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.72 Total: -0.97 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.89 Total: -6.66 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.11 Total: -46.40 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.56 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.04 -9.83 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176590402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.060 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds