Wall clock time and date at job start Tue Mar 31 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47157 * 2 1 4 4 C 1.53000 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.49701 * 304.99623 * 4 3 2 6 6 C 1.53045 * 109.49604 * 184.93144 * 4 3 2 7 7 C 1.53041 * 109.53720 * 178.71503 * 6 4 3 8 8 C 1.53194 * 109.33505 * 61.31795 * 7 6 4 9 9 N 1.46924 * 108.77869 * 305.37751 * 8 7 6 10 10 C 1.34772 * 120.63315 * 233.58949 * 9 8 7 11 11 O 1.21583 * 120.00327 * 174.79221 * 10 9 8 12 12 N 1.34786 * 119.99995 * 354.79409 * 10 9 8 13 13 C 1.46497 * 120.00066 * 184.98207 * 12 10 9 14 14 C 1.52995 * 109.47219 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47275 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46921 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00323 * 359.97438 * 16 15 14 18 18 C 1.37883 * 119.99815 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00147 * 179.97438 * 18 16 15 20 20 Si 1.86806 * 120.00012 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47015 * 89.99854 * 20 18 16 22 22 H 1.48496 * 109.47036 * 210.00091 * 20 18 16 23 23 H 1.48507 * 109.46851 * 330.00019 * 20 18 16 24 24 C 1.46923 * 118.73908 * 53.61092 * 9 8 7 25 25 H 1.09001 * 109.47230 * 60.00270 * 1 2 3 26 26 H 1.09005 * 109.47571 * 300.00380 * 1 2 3 27 27 H 1.08999 * 109.47507 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46514 * 119.99518 * 2 1 3 29 29 H 1.08996 * 109.47029 * 239.99514 * 2 1 3 30 30 H 1.09001 * 109.46563 * 299.99495 * 3 2 1 31 31 H 1.08996 * 109.47094 * 59.99551 * 3 2 1 32 32 H 1.08994 * 109.46221 * 298.70523 * 6 4 3 33 33 H 1.08999 * 109.45628 * 58.66246 * 6 4 3 34 34 H 1.09000 * 109.47371 * 301.36855 * 7 6 4 35 35 H 1.08994 * 109.52087 * 181.30197 * 7 6 4 36 36 H 1.09010 * 109.58340 * 185.59220 * 8 7 6 37 37 H 1.08997 * 109.70585 * 65.23841 * 8 7 6 38 38 H 0.96998 * 119.99587 * 4.98600 * 12 10 9 39 39 H 1.08999 * 109.47437 * 300.00017 * 13 12 10 40 40 H 1.09005 * 109.47138 * 60.00100 * 13 12 10 41 41 H 1.08999 * 109.46813 * 300.00256 * 14 13 12 42 42 H 1.08999 * 109.47150 * 59.99513 * 14 13 12 43 43 H 1.08999 * 109.47290 * 299.99818 * 15 14 13 44 44 H 1.09005 * 109.47229 * 59.99867 * 15 14 13 45 45 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 46 46 H 1.08994 * 109.58924 * 186.60292 * 24 9 8 47 47 H 1.09001 * 109.70632 * 66.24497 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9334 0.8533 0.8426 6 6 4.0807 2.8798 0.1247 7 6 5.6108 2.8782 0.1576 8 6 6.1457 2.2854 -1.1498 9 7 5.5451 0.9593 -1.3484 10 6 6.3216 -0.1211 -1.5634 11 8 5.8200 -1.2264 -1.6319 12 7 7.6544 0.0239 -1.7026 13 6 8.4854 -1.1331 -2.0445 14 6 9.9493 -0.6992 -2.1404 15 6 10.8171 -1.9074 -2.4982 16 6 12.2590 -1.4797 -2.5933 17 1 12.5294 -0.4492 -2.4167 18 6 13.2331 -2.4042 -2.9058 19 7 14.4914 -2.0310 -2.9893 20 14 12.7653 -4.1867 -3.2119 21 1 12.4694 -4.3801 -4.6542 22 1 13.8917 -5.0692 -2.8149 23 1 11.5629 -4.5276 -2.4098 24 6 4.0818 0.8333 -1.3085 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9562 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 3.7370 3.4624 -0.7300 33 1 3.6977 3.3232 1.0438 34 1 5.9555 2.2758 0.9981 35 1 5.9738 3.8999 0.2692 36 1 7.2301 2.1903 -1.0912 37 1 5.8804 2.9352 -1.9836 38 1 8.0633 0.8944 -1.5762 39 1 8.3826 -1.8953 -1.2720 40 1 8.1634 -1.5412 -3.0026 41 1 10.0524 0.0631 -2.9127 42 1 10.2709 -0.2913 -1.1822 43 1 10.7141 -2.6700 -1.7262 44 1 10.4953 -2.3149 -3.4566 45 1 15.1766 -2.6813 -3.2095 46 1 3.8043 -0.2197 -1.3547 47 1 3.6441 1.3640 -2.1540 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176590402.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:18 Heat of formation + Delta-G solvation = -83.725166 kcal Electronic energy + Delta-G solvation = -22316.651018 eV Core-core repulsion = 19111.186307 eV Total energy + Delta-G solvation = -3205.464711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.51576 -39.13906 -37.00105 -36.22682 -35.13011 -33.75407 -33.01344 -31.84891 -29.06949 -27.19849 -26.36228 -24.35650 -23.83148 -22.23573 -21.87427 -21.38850 -20.43639 -19.25344 -18.75211 -17.43859 -16.93453 -16.41067 -16.23499 -15.78668 -15.46225 -15.38960 -15.17789 -14.86896 -14.73921 -14.63994 -14.17424 -13.94886 -13.79112 -13.57355 -13.34837 -12.95793 -12.76214 -12.71624 -12.47144 -12.15711 -12.02511 -11.87620 -11.84926 -11.77096 -11.60183 -11.52383 -11.43164 -11.33312 -11.14754 -11.01884 -10.76001 -10.23508 -9.46872 -8.29244 -6.32912 1.36986 1.38692 1.50694 1.63195 2.08897 2.36556 2.93519 3.06421 3.68131 3.82616 3.89151 4.05514 4.10271 4.17818 4.20558 4.25621 4.31346 4.40182 4.49457 4.57095 4.62888 4.76997 4.82328 4.86470 4.87646 4.89350 4.91021 4.96037 5.03253 5.03863 5.12987 5.16274 5.24989 5.28280 5.38607 5.40864 5.46662 5.49852 5.53509 5.55593 5.60598 5.66006 5.93180 6.27614 6.74681 6.94227 7.31776 7.52075 8.87012 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030578 B = 0.002744 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.457214 B =10202.095719 C =10960.640431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.103 4.103 4 C -0.097 4.097 5 H 0.054 0.946 6 C -0.109 4.109 7 C -0.132 4.132 8 C 0.103 3.897 9 N -0.627 5.627 10 C 0.698 3.302 11 O -0.639 6.639 12 N -0.735 5.735 13 C 0.146 3.854 14 C -0.098 4.098 15 C -0.012 4.012 16 C -0.529 4.529 17 H 0.039 0.961 18 C 0.005 3.995 19 N -0.949 5.949 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.249 1.249 24 C 0.130 3.870 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.408 0.592 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.266 0.734 46 H 0.067 0.933 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.857 12.791 6.690 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.170 4.170 3 C -0.141 4.141 4 C -0.117 4.117 5 H 0.073 0.927 6 C -0.147 4.147 7 C -0.170 4.170 8 C -0.019 4.019 9 N -0.364 5.364 10 C 0.399 3.601 11 O -0.521 6.521 12 N -0.392 5.392 13 C 0.021 3.979 14 C -0.136 4.136 15 C -0.050 4.050 16 C -0.567 4.567 17 H 0.057 0.943 18 C -0.192 4.192 19 N -0.590 5.590 20 Si 0.770 3.230 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.173 1.173 24 C 0.007 3.993 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.246 0.754 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.032 11.947 6.584 31.175 hybrid contribution 0.823 -0.660 -0.133 1.064 sum -27.209 11.286 6.451 30.155 Atomic orbital electron populations 1.21753 0.94980 1.01694 1.02269 1.21606 0.96596 0.97394 1.01371 1.21557 0.92801 0.96483 1.03255 1.21516 0.96283 0.97405 0.96456 0.92732 1.21559 0.94687 0.95067 1.03372 1.21913 0.96629 1.02180 0.96275 1.21925 0.98112 0.82611 0.99289 1.47362 1.06828 1.06987 1.75204 1.16103 0.81864 0.84294 0.77826 1.90858 1.74299 1.25890 1.61029 1.45256 1.05116 1.13442 1.75415 1.21149 0.89519 0.87428 0.99765 1.21463 0.91342 0.98955 1.01822 1.19462 0.93478 0.95408 0.96632 1.21448 0.92161 0.96077 1.47058 0.94310 1.25976 0.94703 1.03906 0.94653 1.70051 1.01572 1.36627 1.50761 0.85707 0.78617 0.79152 0.79493 1.19217 1.20994 1.17258 1.21652 0.77427 1.01877 0.98300 0.92170 0.92116 0.93113 0.93063 0.92989 0.90671 0.90511 0.90389 0.90425 0.92811 0.88288 0.89988 0.89396 0.75364 0.92993 0.92685 0.91616 0.91796 0.96166 0.96169 0.92508 0.91405 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.13 -1.91 5.69 30.59 0.17 -1.74 16 3 C -0.10 -1.18 4.69 30.59 0.14 -1.04 16 4 C -0.10 -1.42 2.34 -10.71 -0.03 -1.45 16 5 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 6 C -0.11 -1.13 5.17 30.62 0.16 -0.97 16 7 C -0.13 -1.52 6.08 30.67 0.19 -1.33 16 8 C 0.10 1.50 6.39 86.36 0.55 2.06 16 9 N -0.63 -14.08 2.97 -836.91 -2.49 -16.57 16 10 C 0.70 21.72 8.29 179.05 1.49 23.20 16 11 O -0.64 -25.53 15.77 -3.98 -0.06 -25.59 16 12 N -0.73 -21.01 5.47 -478.54 -2.62 -23.63 16 13 C 0.15 4.93 5.68 86.38 0.49 5.42 16 14 C -0.10 -3.62 5.27 30.59 0.16 -3.46 16 15 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 16 C -0.53 -30.24 9.66 25.60 0.25 -29.99 16 17 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 18 C 0.00 0.26 5.47 84.66 0.46 0.73 16 19 N -0.95 -59.49 13.96 21.45 0.30 -59.20 16 20 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 21 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 23 H -0.25 -11.09 6.54 99.48 0.65 -10.44 16 24 C 0.13 2.57 5.33 86.36 0.46 3.03 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.90 6.70 -2.39 -0.02 0.88 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 1.14 5.65 -2.38 -0.01 1.13 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.41 9.25 5.96 -92.71 -0.55 8.70 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 44 H 0.02 0.91 7.57 -2.38 -0.02 0.89 16 45 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.07 1.73 5.71 -2.39 -0.01 1.72 16 47 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -72.51 363.90 2.66 -69.85 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: 0.31 Total: 15.43 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.33 Total: -7.00 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -4.80 Total: -99.39 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.06 Total: -25.59 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -72.51 2.66 -69.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176590402.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.873 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds