Wall clock time and date at job start Tue Mar 31 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46870 * 2 1 4 4 C 1.53005 * 109.47322 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.49395 * 55.06508 * 4 3 2 6 6 C 1.53035 * 109.49887 * 175.16434 * 4 3 2 7 7 C 1.53043 * 109.53732 * 181.32022 * 6 4 3 8 8 C 1.53622 * 109.23989 * 298.50783 * 7 6 4 9 9 N 1.46934 * 108.54302 * 54.85563 * 8 7 6 10 10 C 1.34776 * 120.62902 * 126.36755 * 9 8 7 11 11 O 1.21582 * 120.00349 * 184.94705 * 10 9 8 12 12 N 1.34782 * 119.99838 * 5.21892 * 10 9 8 13 13 C 1.46502 * 119.99683 * 174.73566 * 12 10 9 14 14 C 1.53004 * 109.47058 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47206 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.47187 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00159 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00021 * 179.97438 * 16 15 14 19 19 N 1.31519 * 120.00330 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00331 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47006 * 89.99266 * 20 18 16 22 22 H 1.48499 * 109.47513 * 209.99807 * 20 18 16 23 23 H 1.48506 * 109.46943 * 329.99739 * 20 18 16 24 24 C 1.46917 * 118.73756 * 306.09372 * 9 8 7 25 25 H 1.09000 * 109.47528 * 300.00066 * 1 2 3 26 26 H 1.09001 * 109.47026 * 60.00515 * 1 2 3 27 27 H 1.09000 * 109.47223 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47548 * 240.00444 * 2 1 3 29 29 H 1.09001 * 109.47026 * 119.99485 * 2 1 3 30 30 H 1.09009 * 109.46971 * 59.99880 * 3 2 1 31 31 H 1.09000 * 109.47437 * 300.00089 * 3 2 1 32 32 H 1.09000 * 109.46128 * 301.33763 * 6 4 3 33 33 H 1.08999 * 109.46090 * 61.30820 * 6 4 3 34 34 H 1.08998 * 109.49685 * 58.58401 * 7 6 4 35 35 H 1.08995 * 109.49454 * 178.64789 * 7 6 4 36 36 H 1.08997 * 109.74158 * 295.12308 * 8 7 6 37 37 H 1.09002 * 109.66818 * 174.54732 * 8 7 6 38 38 H 0.96997 * 120.00063 * 354.74686 * 12 10 9 39 39 H 1.08997 * 109.47728 * 300.00563 * 13 12 10 40 40 H 1.09000 * 109.47100 * 60.00615 * 13 12 10 41 41 H 1.08997 * 109.47170 * 300.00732 * 14 13 12 42 42 H 1.09000 * 109.46803 * 60.00261 * 14 13 12 43 43 H 1.08997 * 109.47653 * 300.00435 * 15 14 13 44 44 H 1.09000 * 109.47028 * 60.00397 * 15 14 13 45 45 H 0.96992 * 120.00484 * 180.02562 * 19 18 16 46 46 H 1.09003 * 109.58863 * 173.64400 * 24 9 8 47 47 H 1.08995 * 109.59114 * 294.07192 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4427 0.0006 5 1 3.9341 0.8541 -0.8415 6 6 4.0807 2.8801 -0.1210 7 6 5.6108 2.8786 -0.1535 8 6 6.1445 2.2857 1.1593 9 7 5.5440 0.9584 1.3508 10 6 6.3204 -0.1220 1.5657 11 8 5.8188 -1.2275 1.6330 12 7 7.6524 0.0236 1.7114 13 6 8.4819 -1.1328 2.0591 14 6 9.9452 -0.6980 2.1632 15 6 10.8116 -1.9057 2.5258 16 6 12.2527 -1.4773 2.6289 17 1 12.5235 -0.4466 2.4539 18 6 13.2253 -2.4010 2.9478 19 7 14.4830 -2.0271 3.0383 20 14 12.7570 -4.1837 3.2513 21 1 12.8136 -4.9351 1.9717 22 1 13.7057 -4.7865 4.2218 23 1 11.3791 -4.2466 3.8018 24 6 4.0808 0.8326 1.3097 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.6984 3.3249 -1.0398 33 1 3.7364 3.4614 0.7344 34 1 5.9562 2.2769 -0.9942 35 1 5.9733 3.9005 -0.2643 36 1 5.8729 2.9333 1.9930 37 1 7.2291 2.1917 1.1053 38 1 8.0617 0.8940 1.5862 39 1 8.1553 -1.5398 3.0161 40 1 8.3834 -1.8959 1.2871 41 1 10.2721 -0.2907 1.2065 42 1 10.0434 0.0650 2.9355 43 1 10.4848 -2.3134 3.4823 44 1 10.7133 -2.6684 1.7532 45 1 15.1673 -2.6769 3.2623 46 1 3.8032 -0.2206 1.3548 47 1 3.6443 1.3641 2.1553 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176590415.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:24 Heat of formation + Delta-G solvation = -63.880663 kcal Electronic energy + Delta-G solvation = -22314.720131 eV Core-core repulsion = 19110.115942 eV Total energy + Delta-G solvation = -3204.604189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47334 -38.22706 -35.50571 -35.45647 -33.36020 -32.73147 -31.48318 -30.99900 -27.44284 -26.52478 -25.29347 -23.18709 -22.70980 -21.23320 -20.68236 -20.45292 -19.40114 -18.08215 -16.76447 -16.32321 -15.80934 -15.40871 -14.75157 -14.70687 -14.54741 -14.39237 -14.13379 -13.94855 -13.62876 -13.30838 -13.18340 -12.77245 -12.68595 -12.40016 -11.97715 -11.94980 -11.82380 -11.55365 -11.39396 -11.22880 -11.03357 -10.88553 -10.87208 -10.77319 -10.44286 -10.19131 -9.97144 -9.79957 -9.65222 -9.21493 -8.96909 -8.54491 -8.48539 -6.05313 -4.03910 2.68334 3.29914 3.32641 3.40038 3.44866 3.95002 4.30543 4.45682 4.45983 4.51882 4.66838 4.80098 4.85909 4.89701 5.08752 5.19950 5.22036 5.28884 5.32927 5.43309 5.49402 5.50582 5.52334 5.58021 5.59881 5.69951 5.72032 5.76181 5.80505 5.84051 5.95189 6.04572 6.06236 6.13324 6.37018 6.46198 6.49050 6.72793 6.85099 6.99365 7.25080 7.38448 7.76866 8.04818 8.51258 8.70862 8.98462 9.57046 11.07884 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030598 B = 0.002743 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.860105 B =10204.296158 C =10963.863469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.110 4.110 4 C -0.104 4.104 5 H 0.075 0.925 6 C -0.113 4.113 7 C -0.135 4.135 8 C 0.110 3.890 9 N -0.633 5.633 10 C 0.705 3.295 11 O -0.593 6.593 12 N -0.743 5.743 13 C 0.132 3.868 14 C -0.112 4.112 15 C -0.011 4.011 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C 0.134 3.866 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.394 0.606 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.263 0.737 46 H 0.095 0.905 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.913 11.671 -6.591 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.148 4.148 4 C -0.124 4.124 5 H 0.093 0.907 6 C -0.151 4.151 7 C -0.174 4.174 8 C -0.013 4.013 9 N -0.371 5.371 10 C 0.406 3.594 11 O -0.471 6.471 12 N -0.399 5.399 13 C 0.009 3.991 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C 0.011 3.989 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.230 0.770 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.113 0.887 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -26.067 10.758 -6.464 28.932 hybrid contribution 0.223 -0.423 0.059 0.482 sum -25.845 10.335 -6.405 28.562 Atomic orbital electron populations 1.21770 0.95981 1.01615 1.01560 1.21608 0.95700 0.96839 1.02606 1.21601 0.94017 0.97061 1.02147 1.21591 0.95341 0.96718 0.98727 0.90692 1.21558 0.95144 0.96277 1.02088 1.21996 0.96235 1.01322 0.97819 1.21715 0.97906 0.84104 0.97592 1.47268 1.06466 1.06665 1.76740 1.15907 0.81662 0.83978 0.77852 1.90891 1.73485 1.23781 1.58981 1.45515 1.05483 1.13505 1.75397 1.21514 0.90423 0.86897 1.00311 1.21700 0.91090 1.00758 1.01502 1.19499 0.95569 0.93424 0.96395 1.21095 0.89648 0.97443 1.47732 0.91029 1.25032 0.94849 0.98932 0.94715 1.69911 1.00330 1.34868 1.49134 0.86772 0.78836 0.85241 0.78437 1.20248 1.21393 1.18855 1.21528 0.78187 1.02923 0.96284 0.92821 0.92949 0.92794 0.91942 0.91515 0.91822 0.91751 0.91727 0.91759 0.91354 0.90657 0.91334 0.90279 0.77007 0.92064 0.91950 0.92213 0.92181 0.96281 0.96702 0.92716 0.88697 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.96 5.69 -26.73 -0.15 -1.12 16 3 C -0.11 -0.73 4.69 -26.73 -0.13 -0.86 16 4 C -0.10 -0.84 2.34 -90.50 -0.21 -1.05 16 5 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 6 C -0.11 -0.75 5.16 -26.69 -0.14 -0.89 16 7 C -0.14 -0.96 6.10 -26.39 -0.16 -1.12 16 8 C 0.11 0.94 6.42 -3.48 -0.02 0.92 16 9 N -0.63 -7.45 2.97 -178.23 -0.53 -7.98 16 10 C 0.70 11.08 8.29 -86.91 -0.72 10.36 16 11 O -0.59 -11.64 15.77 5.29 0.08 -11.55 16 12 N -0.74 -10.97 5.47 -65.22 -0.36 -11.33 16 13 C 0.13 2.28 5.68 -4.04 -0.02 2.26 16 14 C -0.11 -2.13 5.27 -26.73 -0.14 -2.28 16 15 C -0.01 -0.26 4.04 -27.89 -0.11 -0.37 16 16 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 20 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 24 C 0.13 1.38 5.33 -3.71 -0.02 1.36 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.56 6.70 -51.93 -0.35 0.21 16 30 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.64 5.65 -51.93 -0.29 0.35 16 38 H 0.39 4.78 5.96 -40.82 -0.24 4.54 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 44 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.09 1.17 5.71 -51.93 -0.30 0.87 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -33.04 363.93 -9.82 -42.87 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.72 Total: -0.97 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -1.89 Total: -6.66 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.11 Total: -46.39 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.04 -9.82 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176590415.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.016 kcal (2) G-P(sol) polarization free energy of solvation -33.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds