Wall clock time and date at job start Tue Mar 31 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47108 * 2 1 4 4 C 1.53001 * 109.47108 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47444 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.47515 * 179.97438 * 5 4 3 7 7 C 1.34774 * 119.99868 * 179.97438 * 6 5 4 8 8 O 1.21275 * 120.00329 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99389 * 180.02562 * 7 6 5 10 10 N 1.46901 * 109.46566 * 180.02562 * 9 7 6 11 11 C 1.46908 * 110.99873 * 189.99893 * 10 9 7 12 12 C 1.50702 * 109.46589 * 68.55653 * 11 10 9 13 13 H 1.07998 * 120.00177 * 355.80452 * 12 11 10 14 14 C 1.37878 * 119.99757 * 175.80078 * 12 11 10 15 15 N 1.31519 * 119.99957 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00109 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46958 * 60.00332 * 16 14 12 18 18 H 1.48501 * 109.47183 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46997 * 300.00050 * 16 14 12 20 20 C 1.46895 * 111.00108 * 66.05025 * 10 9 7 21 21 C 1.53004 * 109.47549 * 199.97934 * 20 10 9 22 22 C 1.52995 * 117.50085 * 242.63728 * 21 20 10 23 23 C 1.52992 * 117.50112 * 174.01335 * 21 20 10 24 24 H 1.09000 * 109.47101 * 299.99831 * 1 2 3 25 25 H 1.08999 * 109.47270 * 59.99652 * 1 2 3 26 26 H 1.08990 * 109.47115 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47101 * 240.00169 * 2 1 3 28 28 H 1.08999 * 109.47270 * 120.00348 * 2 1 3 29 29 H 1.08997 * 109.47304 * 60.00527 * 3 2 1 30 30 H 1.08996 * 109.47625 * 299.99856 * 3 2 1 31 31 H 1.09000 * 109.47101 * 60.00169 * 4 3 2 32 32 H 1.08999 * 109.47270 * 300.00348 * 4 3 2 33 33 H 1.09000 * 109.46816 * 60.00016 * 5 4 3 34 34 H 1.08999 * 109.47189 * 300.00420 * 5 4 3 35 35 H 0.97006 * 119.99549 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.47241 * 60.00397 * 9 7 6 37 37 H 1.08998 * 109.47512 * 299.99771 * 9 7 6 38 38 H 1.08997 * 109.47287 * 188.55716 * 11 10 9 39 39 H 1.08994 * 109.47114 * 308.56021 * 11 10 9 40 40 H 0.96996 * 119.99889 * 179.97438 * 15 14 12 41 41 H 1.09002 * 109.47102 * 319.97845 * 20 10 9 42 42 H 1.09006 * 109.47605 * 79.97901 * 20 10 9 43 43 H 1.09007 * 115.54309 * 28.33782 * 21 20 10 44 44 H 1.09000 * 117.49984 * 359.97438 * 22 21 20 45 45 H 1.08997 * 117.50262 * 145.01817 * 22 21 20 46 46 H 1.09009 * 117.49410 * 214.98042 * 23 21 20 47 47 H 1.09000 * 117.50255 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 7 5.5451 2.8849 0.0012 7 6 6.2189 4.0522 0.0004 8 8 5.6126 5.1024 -0.0009 9 6 7.7260 4.0520 0.0011 10 7 8.2156 5.4371 0.0006 11 6 9.6647 5.4831 -0.2369 12 6 9.9553 5.0563 -1.6527 13 1 9.1527 4.7141 -2.2891 14 6 11.2459 5.1029 -2.1355 15 7 12.2234 5.5193 -1.3604 16 14 11.6064 4.5733 -3.8903 17 1 10.8399 5.4275 -4.8325 18 1 13.0594 4.7162 -4.1619 19 1 11.2068 3.1546 -4.0711 20 6 7.8657 6.1196 1.2534 21 6 7.9276 7.6339 1.0438 22 6 8.9500 8.4199 1.8669 23 6 7.4595 8.5262 2.1950 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.6768 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.9337 0.9285 -0.8891 32 1 3.9330 0.9287 0.8908 33 1 3.7164 3.3993 0.8895 34 1 3.7171 3.3983 -0.8904 35 1 6.0301 2.0448 0.0019 36 1 8.0897 3.5374 -0.8882 37 1 8.0890 3.5391 0.8917 38 1 10.0261 6.4997 -0.0824 39 1 10.1680 4.8092 0.4563 40 1 13.1314 5.5517 -1.6999 41 1 6.8568 5.8352 1.5526 42 1 8.5707 5.8317 2.0333 43 1 7.7282 7.9764 0.0283 44 1 9.5784 7.8582 2.5581 45 1 9.4237 9.2797 1.3931 46 1 6.9524 9.4561 1.9370 47 1 7.1070 8.0345 3.1017 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177028776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:39 Heat of formation + Delta-G solvation = -31.189418 kcal Electronic energy + Delta-G solvation = -22158.030210 eV Core-core repulsion = 18954.843621 eV Total energy + Delta-G solvation = -3203.186590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.45281 -37.44413 -36.54100 -35.12282 -34.24436 -32.43833 -31.10588 -28.09347 -27.57618 -25.79918 -23.97341 -22.17764 -21.83952 -21.44111 -21.06646 -19.94509 -19.44997 -16.63902 -16.43039 -16.22736 -15.78707 -15.39782 -14.88781 -14.56351 -14.29970 -13.97455 -13.79401 -13.67797 -13.39680 -13.16536 -12.85389 -12.41496 -12.16034 -11.91525 -11.81833 -11.42330 -11.41391 -11.25760 -11.16022 -11.03886 -11.03253 -10.81304 -10.73431 -10.70097 -10.63252 -9.96801 -9.76389 -9.43221 -9.24446 -8.96625 -8.79615 -8.41125 -7.21111 -6.01141 -4.02739 3.12433 3.33416 3.38187 3.39246 3.41768 4.35671 4.44335 4.50209 4.61152 4.74568 4.91054 4.95244 5.01759 5.28846 5.31095 5.35585 5.39129 5.40594 5.44719 5.49357 5.58004 5.66784 5.69016 5.77082 5.77492 5.91942 5.94251 6.03512 6.04552 6.07602 6.09306 6.19620 6.30064 6.34772 6.49231 6.58681 6.67646 6.93966 7.28655 7.36811 7.73809 7.81820 8.12803 8.22868 8.55363 8.68814 9.04251 9.61242 11.09323 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012858 B = 0.003648 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.060403 B = 7674.018051 C = 9551.319628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.131 4.131 5 C 0.121 3.879 6 N -0.743 5.743 7 C 0.511 3.489 8 O -0.522 6.522 9 C 0.045 3.955 10 N -0.517 5.517 11 C 0.195 3.805 12 C -0.510 4.510 13 H 0.061 0.939 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.087 3.913 21 C -0.118 4.118 22 C -0.183 4.183 23 C -0.189 4.189 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.398 0.602 36 H 0.113 0.887 37 H 0.048 0.952 38 H 0.044 0.956 39 H -0.013 1.013 40 H 0.261 0.739 41 H 0.073 0.927 42 H 0.020 0.980 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.893 -8.607 5.826 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.169 4.169 5 C -0.003 4.003 6 N -0.398 5.398 7 C 0.298 3.702 8 O -0.396 6.396 9 C -0.086 4.086 10 N -0.241 5.241 11 C 0.070 3.930 12 C -0.548 4.548 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.724 3.276 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.041 4.041 21 C -0.137 4.137 22 C -0.220 4.220 23 C -0.226 4.226 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.131 0.869 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.005 0.995 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.038 0.962 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.352 -7.526 5.440 19.680 hybrid contribution 1.003 -1.105 -0.317 1.526 sum -16.349 -8.630 5.122 19.184 Atomic orbital electron populations 1.21780 0.95913 1.01529 1.01885 1.21526 0.95848 0.96782 1.02062 1.21531 0.94477 0.96990 1.02562 1.21813 0.96171 0.96220 1.02731 1.21252 0.80442 0.96511 1.02062 1.46098 1.06777 1.09089 1.77794 1.21142 0.90859 0.83128 0.75062 1.90651 1.70295 1.31075 1.47617 1.21874 0.89767 0.93889 1.03080 1.61769 1.18643 1.11330 1.32400 1.19797 0.79406 0.97692 0.96113 1.21136 0.92917 1.43284 0.97482 0.92065 1.24969 0.96238 0.95537 0.97695 1.69950 1.00295 1.47285 1.36088 0.86592 0.77002 0.79039 0.84944 1.20171 1.21393 1.20339 1.21644 0.99588 0.92163 0.90716 1.22160 1.01978 0.93126 0.96432 1.22983 0.91624 1.03299 1.04105 1.22895 0.97559 1.01852 1.00317 0.92741 0.92707 0.92860 0.91977 0.92035 0.91706 0.91619 0.91264 0.91392 0.92006 0.91818 0.76853 0.86944 0.93468 0.93838 0.99522 0.92892 0.90910 0.96238 0.87143 0.89356 0.89286 0.89458 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.12 -0.86 5.21 -26.73 -0.14 -1.00 16 4 C -0.13 -1.05 5.33 -26.73 -0.14 -1.20 16 5 C 0.12 1.37 5.67 -4.04 -0.02 1.34 16 6 N -0.74 -9.58 5.56 -60.29 -0.33 -9.92 16 7 C 0.51 8.93 7.34 -10.98 -0.08 8.85 16 8 O -0.52 -10.90 14.55 5.56 0.08 -10.82 16 9 C 0.05 0.86 5.29 -4.97 -0.03 0.83 16 10 N -0.52 -11.56 4.14 -237.51 -0.98 -12.54 16 11 C 0.19 5.05 4.55 -4.97 -0.02 5.03 16 12 C -0.51 -14.16 8.48 -34.44 -0.29 -14.45 16 13 H 0.06 1.68 7.20 -52.49 -0.38 1.31 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 16 Si 0.90 21.50 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 20 C 0.09 1.75 4.77 -3.83 -0.02 1.73 16 21 C -0.12 -2.27 5.19 -90.62 -0.47 -2.74 16 22 C -0.18 -3.15 10.18 -26.74 -0.27 -3.42 16 23 C -0.19 -2.97 10.25 -26.74 -0.27 -3.24 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 36 H 0.11 2.19 6.76 -51.93 -0.35 1.83 16 37 H 0.05 0.82 8.12 -51.93 -0.42 0.39 16 38 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 39 H -0.01 -0.35 8.10 -51.93 -0.42 -0.77 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.07 1.44 5.86 -51.93 -0.30 1.14 16 42 H 0.02 0.39 7.73 -51.93 -0.40 -0.01 16 43 H 0.11 2.33 8.14 -51.93 -0.42 1.91 16 44 H 0.09 1.50 8.03 -51.93 -0.42 1.09 16 45 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 46 H 0.09 1.25 8.14 -51.92 -0.42 0.83 16 47 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -31.71 380.07 -10.34 -42.05 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.90 Total: 3.00 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -1.65 Total: -8.31 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.58 Total: -48.13 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.08 Total: -10.82 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.71 -10.34 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177028776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.864 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds