Wall clock time and date at job start Tue Mar 31 2020 05:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46792 * 2 1 4 4 C 1.52995 * 109.47401 * 120.00669 * 2 1 3 5 5 C 1.52995 * 109.46975 * 175.00249 * 4 2 1 6 6 N 1.46904 * 109.47039 * 185.11287 * 5 4 2 7 7 C 1.46904 * 110.99876 * 159.57736 * 6 5 4 8 8 C 1.50700 * 109.47079 * 287.59485 * 7 6 5 9 9 H 1.08008 * 120.00026 * 355.19500 * 8 7 6 10 10 C 1.37873 * 120.00101 * 175.18554 * 8 7 6 11 11 N 1.31517 * 120.00204 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00084 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47033 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46891 * 120.00326 * 12 10 8 15 15 H 1.48499 * 109.47112 * 240.00036 * 12 10 8 16 16 C 1.46903 * 111.00021 * 283.53169 * 6 5 4 17 17 C 1.50696 * 109.46915 * 170.00080 * 16 6 5 18 18 O 1.21277 * 120.00392 * 0.02562 * 17 16 6 19 19 N 1.34783 * 119.99705 * 179.72242 * 17 16 6 20 20 C 1.47016 * 125.64691 * 359.96895 * 19 17 16 21 21 C 1.54319 * 107.27537 * 180.96734 * 20 19 17 22 22 C 1.55161 * 102.86184 * 22.52175 * 21 20 19 23 23 C 1.47422 * 125.64564 * 180.27268 * 19 17 16 24 24 H 1.08999 * 109.46828 * 299.99380 * 1 2 3 25 25 H 1.08992 * 109.47216 * 59.99786 * 1 2 3 26 26 H 1.09007 * 109.46651 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46828 * 240.00620 * 2 1 3 28 28 H 1.08999 * 109.46928 * 60.00681 * 3 2 1 29 29 H 1.09000 * 109.47380 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47802 * 300.00317 * 3 2 1 31 31 H 1.08996 * 109.47261 * 54.99840 * 4 2 1 32 32 H 1.09003 * 109.46992 * 295.00051 * 4 2 1 33 33 H 1.08993 * 109.47476 * 65.11408 * 5 4 2 34 34 H 1.08998 * 109.47035 * 305.10983 * 5 4 2 35 35 H 1.08993 * 109.47075 * 47.59695 * 7 6 5 36 36 H 1.09001 * 109.46898 * 167.60332 * 7 6 5 37 37 H 0.96994 * 120.00400 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.47113 * 49.99896 * 16 6 5 39 39 H 1.09000 * 109.46757 * 289.99834 * 16 6 5 40 40 H 1.08999 * 109.88140 * 300.50800 * 20 19 17 41 41 H 1.08997 * 109.88619 * 61.67578 * 20 19 17 42 42 H 1.09001 * 110.92544 * 264.11356 * 21 20 19 43 43 H 1.08993 * 110.59287 * 140.78464 * 21 20 19 44 44 H 1.08998 * 111.00550 * 206.22797 * 22 21 20 45 45 H 1.08997 * 111.00166 * 82.37888 * 22 21 20 46 46 H 1.09000 * 110.37031 * 274.67424 * 23 19 17 47 47 H 1.08997 * 110.37057 * 36.89088 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.8310 1.1877 6 7 4.0445 -1.6293 2.3239 7 6 5.3875 -2.1641 2.0619 8 6 5.2982 -3.2670 1.0389 9 1 4.3332 -3.5961 0.6822 10 6 6.4483 -3.8560 0.5580 11 7 7.6233 -3.4556 0.9924 12 14 6.3377 -5.2227 -0.7107 13 1 4.9119 -5.4852 -1.0324 14 1 7.0556 -4.8123 -1.9442 15 1 6.9577 -6.4565 -0.1644 16 6 4.0234 -0.8441 3.5652 17 6 4.2827 -1.7530 4.7389 18 8 4.4673 -2.9381 4.5591 19 7 4.3154 -1.2478 5.9881 20 6 4.1163 0.1639 6.3469 21 6 4.2658 0.2729 7.8789 22 6 5.1076 -0.9813 8.2339 23 6 4.5630 -2.0184 7.2202 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6055 -1.7199 1.2949 32 1 1.7517 -0.1585 2.1369 33 1 4.0030 0.1659 1.2335 34 1 3.8572 -1.3139 0.2553 35 1 6.0280 -1.3678 1.6828 36 1 5.8078 -2.5595 2.9866 37 1 8.4324 -3.8702 0.6544 38 1 3.0478 -0.3718 3.6799 39 1 4.7960 -0.0764 3.5226 40 1 4.8678 0.7811 5.8544 41 1 3.1178 0.4846 6.0501 42 1 3.2928 0.2354 8.3687 43 1 4.7994 1.1844 8.1481 44 1 4.9196 -1.3007 9.2589 45 1 6.1697 -0.7974 8.0722 46 1 3.6346 -2.4560 7.5871 47 1 5.3029 -2.7978 7.0381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177030962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:56 Heat of formation + Delta-G solvation = -43.012661 kcal Electronic energy + Delta-G solvation = -23214.437327 eV Core-core repulsion = 20010.738043 eV Total energy + Delta-G solvation = -3203.699284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69980 -37.67533 -36.70186 -34.98173 -32.42060 -31.56012 -29.35202 -28.80640 -27.78778 -27.00865 -25.17801 -23.13640 -22.56575 -21.25988 -20.30010 -19.61303 -18.72249 -16.78359 -16.58343 -16.16605 -15.20899 -14.96041 -14.45416 -14.32073 -14.26435 -13.92195 -13.56594 -13.35345 -13.07937 -12.85002 -12.70717 -12.29295 -12.28439 -12.08617 -11.86857 -11.76311 -11.43377 -11.38032 -11.25549 -11.09832 -10.85439 -10.75243 -10.69413 -10.51228 -10.39336 -10.14605 -9.99094 -9.69882 -9.21573 -8.92855 -8.37146 -8.21484 -7.17434 -5.87251 -3.85512 3.21514 3.25436 3.40350 3.47280 3.53204 4.44392 4.52297 4.55263 4.78444 4.87159 5.11871 5.19652 5.20987 5.23166 5.33274 5.35003 5.48436 5.55772 5.59239 5.63329 5.71982 5.72462 5.77048 5.80578 5.89087 5.93285 5.95528 5.99839 6.06991 6.08083 6.10734 6.21056 6.25953 6.45373 6.54070 6.55485 6.78404 6.86348 7.39807 7.44769 7.80352 7.97395 8.28834 8.30665 8.65013 8.82254 9.21246 9.76269 11.24225 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009580 B = 0.006083 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.045944 B = 4601.738505 C = 7003.218613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.108 4.108 5 C 0.064 3.936 6 N -0.521 5.521 7 C 0.190 3.810 8 C -0.490 4.490 9 H 0.062 0.938 10 C 0.052 3.948 11 N -0.903 5.903 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.287 1.287 15 H -0.285 1.285 16 C 0.045 3.955 17 C 0.525 3.475 18 O -0.493 6.493 19 N -0.633 5.633 20 C 0.102 3.898 21 C -0.131 4.131 22 C -0.134 4.134 23 C 0.107 3.893 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.021 0.979 34 H 0.086 0.914 35 H -0.012 1.012 36 H 0.044 0.956 37 H 0.258 0.742 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 12.306 9.935 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.064 4.064 6 N -0.246 5.246 7 C 0.065 3.935 8 C -0.529 4.529 9 H 0.081 0.919 10 C -0.148 4.148 11 N -0.544 5.544 12 Si 0.723 3.277 13 H -0.197 1.197 14 H -0.213 1.213 15 H -0.212 1.212 16 C -0.086 4.086 17 C 0.313 3.687 18 O -0.364 6.364 19 N -0.372 5.372 20 C -0.022 4.022 21 C -0.169 4.169 22 C -0.172 4.172 23 C -0.016 4.016 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.006 0.994 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.124 11.149 9.744 17.937 hybrid contribution 0.660 0.062 -0.669 0.942 sum -9.465 11.211 9.074 17.251 Atomic orbital electron populations 1.21820 0.95786 1.01524 1.00992 1.21118 0.95115 0.96168 0.99327 1.21875 1.01499 0.96163 1.00860 1.21647 0.96450 1.00427 0.96048 1.22070 0.93592 0.94865 0.95887 1.61901 1.30613 1.32774 0.99301 1.19882 0.81720 0.93970 0.97925 1.21139 0.92578 1.17499 1.21642 0.91948 1.24961 0.95349 0.97348 0.97161 1.69974 0.97301 1.42822 1.44270 0.86483 0.78047 0.82091 0.81048 1.19681 1.21308 1.21151 1.21856 1.01101 0.94366 0.91306 1.20518 0.76659 0.89388 0.82127 1.90785 1.45895 1.16212 1.83542 1.48636 1.73875 1.08671 1.06052 1.21953 1.01097 0.83486 0.95647 1.22621 1.00800 0.98829 0.94638 1.22787 1.00222 0.95174 0.99035 1.22114 1.00428 0.94991 0.84086 0.93119 0.93245 0.92748 0.91033 0.93189 0.92300 0.93354 0.91219 0.93217 0.96091 0.89514 0.99438 0.93805 0.93267 0.89561 0.93471 0.91646 0.91714 0.90670 0.90232 0.90093 0.90615 0.91985 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 2 C -0.10 -1.30 2.92 -90.62 -0.26 -1.56 16 3 C -0.15 -1.75 8.95 37.16 0.33 -1.41 16 4 C -0.11 -1.69 4.73 -26.74 -0.13 -1.81 16 5 C 0.06 1.23 4.45 -3.82 -0.02 1.21 16 6 N -0.52 -11.78 4.11 -237.52 -0.98 -12.75 16 7 C 0.19 5.26 4.28 -4.97 -0.02 5.24 16 8 C -0.49 -14.63 8.32 -34.44 -0.29 -14.91 16 9 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 10 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 11 N -0.90 -28.27 13.29 55.43 0.74 -27.53 16 12 Si 0.89 22.86 29.54 -169.99 -5.02 17.84 16 13 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 C 0.05 0.85 4.46 -4.98 -0.02 0.82 16 17 C 0.53 10.51 7.41 -10.98 -0.08 10.43 16 18 O -0.49 -12.47 14.74 5.56 0.08 -12.39 16 19 N -0.63 -9.69 3.33 -170.53 -0.57 -10.26 16 20 C 0.10 1.09 6.48 -3.07 -0.02 1.08 16 21 C -0.13 -1.05 6.95 -24.90 -0.17 -1.23 16 22 C -0.13 -1.24 7.08 -24.58 -0.17 -1.41 16 23 C 0.11 1.41 6.91 -2.53 -0.02 1.39 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.75 6.68 -51.93 -0.35 0.41 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.72 6.99 -51.93 -0.36 0.35 16 33 H 0.02 0.38 6.67 -51.93 -0.35 0.03 16 34 H 0.09 1.88 7.14 -51.93 -0.37 1.51 16 35 H -0.01 -0.36 8.05 -51.93 -0.42 -0.77 16 36 H 0.04 1.35 5.81 -51.93 -0.30 1.05 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.09 1.34 6.76 -51.93 -0.35 0.99 16 39 H 0.05 0.84 8.12 -51.93 -0.42 0.42 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.08 1.17 8.03 -51.93 -0.42 0.76 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -35.06 368.26 -9.62 -44.68 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -8.80 Total: -3.14 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.63 Total: -2.00 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.81 Total: -50.54 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.39 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.06 -9.62 -44.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177030962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.667 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds