Wall clock time and date at job start Tue Mar 31 2020 05:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46792 * 2 1 4 4 C 1.52995 * 109.47401 * 120.00669 * 2 1 3 5 5 C 1.52995 * 109.46975 * 175.00249 * 4 2 1 6 6 N 1.46904 * 109.47039 * 185.11287 * 5 4 2 7 7 C 1.46904 * 110.99876 * 159.57736 * 6 5 4 8 8 C 1.50700 * 109.47079 * 287.59485 * 7 6 5 9 9 H 1.08008 * 120.00026 * 355.19500 * 8 7 6 10 10 C 1.37873 * 120.00101 * 175.18554 * 8 7 6 11 11 N 1.31517 * 120.00204 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00084 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47033 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46891 * 120.00326 * 12 10 8 15 15 H 1.48499 * 109.47112 * 240.00036 * 12 10 8 16 16 C 1.46903 * 111.00021 * 283.53169 * 6 5 4 17 17 C 1.50696 * 109.46915 * 170.00080 * 16 6 5 18 18 O 1.21277 * 120.00392 * 0.02562 * 17 16 6 19 19 N 1.34783 * 119.99705 * 179.72242 * 17 16 6 20 20 C 1.47016 * 125.64691 * 359.96895 * 19 17 16 21 21 C 1.54319 * 107.27537 * 180.96734 * 20 19 17 22 22 C 1.55161 * 102.86184 * 22.52175 * 21 20 19 23 23 C 1.47422 * 125.64564 * 180.27268 * 19 17 16 24 24 H 1.08999 * 109.46828 * 299.99380 * 1 2 3 25 25 H 1.08992 * 109.47216 * 59.99786 * 1 2 3 26 26 H 1.09007 * 109.46651 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46828 * 240.00620 * 2 1 3 28 28 H 1.08999 * 109.46928 * 60.00681 * 3 2 1 29 29 H 1.09000 * 109.47380 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47802 * 300.00317 * 3 2 1 31 31 H 1.08996 * 109.47261 * 54.99840 * 4 2 1 32 32 H 1.09003 * 109.46992 * 295.00051 * 4 2 1 33 33 H 1.08993 * 109.47476 * 65.11408 * 5 4 2 34 34 H 1.08998 * 109.47035 * 305.10983 * 5 4 2 35 35 H 1.08993 * 109.47075 * 47.59695 * 7 6 5 36 36 H 1.09001 * 109.46898 * 167.60332 * 7 6 5 37 37 H 0.96994 * 120.00400 * 179.97438 * 11 10 8 38 38 H 1.08998 * 109.47113 * 49.99896 * 16 6 5 39 39 H 1.09000 * 109.46757 * 289.99834 * 16 6 5 40 40 H 1.08999 * 109.88140 * 300.50800 * 20 19 17 41 41 H 1.08997 * 109.88619 * 61.67578 * 20 19 17 42 42 H 1.09001 * 110.92544 * 264.11356 * 21 20 19 43 43 H 1.08993 * 110.59287 * 140.78464 * 21 20 19 44 44 H 1.08998 * 111.00550 * 206.22797 * 22 21 20 45 45 H 1.08997 * 111.00166 * 82.37888 * 22 21 20 46 46 H 1.09000 * 110.37031 * 274.67424 * 23 19 17 47 47 H 1.08997 * 110.37057 * 36.89088 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5649 -0.8310 1.1877 6 7 4.0445 -1.6293 2.3239 7 6 5.3875 -2.1641 2.0619 8 6 5.2982 -3.2670 1.0389 9 1 4.3332 -3.5961 0.6822 10 6 6.4483 -3.8560 0.5580 11 7 7.6233 -3.4556 0.9924 12 14 6.3377 -5.2227 -0.7107 13 1 4.9119 -5.4852 -1.0324 14 1 7.0556 -4.8123 -1.9442 15 1 6.9577 -6.4565 -0.1644 16 6 4.0234 -0.8441 3.5652 17 6 4.2827 -1.7530 4.7389 18 8 4.4673 -2.9381 4.5591 19 7 4.3154 -1.2478 5.9881 20 6 4.1163 0.1639 6.3469 21 6 4.2658 0.2729 7.8789 22 6 5.1076 -0.9813 8.2339 23 6 4.5630 -2.0184 7.2202 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8933 -0.5137 -0.8900 28 1 1.6767 1.9562 0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6055 -1.7199 1.2949 32 1 1.7517 -0.1585 2.1369 33 1 4.0030 0.1659 1.2335 34 1 3.8572 -1.3139 0.2553 35 1 6.0280 -1.3678 1.6828 36 1 5.8078 -2.5595 2.9866 37 1 8.4324 -3.8702 0.6544 38 1 3.0478 -0.3718 3.6799 39 1 4.7960 -0.0764 3.5226 40 1 4.8678 0.7811 5.8544 41 1 3.1178 0.4846 6.0501 42 1 3.2928 0.2354 8.3687 43 1 4.7994 1.1844 8.1481 44 1 4.9196 -1.3007 9.2589 45 1 6.1697 -0.7974 8.0722 46 1 3.6346 -2.4560 7.5871 47 1 5.3029 -2.7978 7.0381 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177030962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:56 Heat of formation + Delta-G solvation = -66.536988 kcal Electronic energy + Delta-G solvation = -23215.457419 eV Core-core repulsion = 20010.738043 eV Total energy + Delta-G solvation = -3204.719375 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.07726 -39.03689 -38.02092 -36.47432 -34.63617 -32.75913 -30.51118 -30.23581 -29.44442 -27.93425 -26.91771 -24.46033 -24.28038 -22.24810 -21.77208 -20.75846 -20.07634 -18.59789 -18.19601 -17.46424 -16.89992 -16.43520 -16.04780 -15.83140 -15.60680 -15.35679 -14.61280 -14.47072 -14.33710 -14.24814 -14.00548 -13.75037 -13.65478 -13.54099 -13.25637 -12.98856 -12.96897 -12.66343 -12.55170 -12.39083 -12.17633 -12.12301 -12.10145 -11.88333 -11.58662 -11.55382 -11.41011 -11.34567 -11.21979 -10.74860 -10.50059 -9.59954 -8.99483 -8.18751 -6.26538 1.35320 1.38047 1.51445 1.70036 1.99306 2.39894 3.13224 3.26094 3.54390 3.71485 3.96927 4.00566 4.06113 4.12647 4.17041 4.27852 4.30262 4.33939 4.44711 4.51841 4.69281 4.71616 4.81804 4.86729 4.88215 4.90834 4.95186 4.98790 5.00848 5.06358 5.11342 5.14060 5.19968 5.29341 5.31060 5.35970 5.43250 5.50065 5.57345 5.59111 5.66877 6.09659 6.38740 6.45713 6.66938 6.87766 7.31598 7.40854 8.92898 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.009580 B = 0.006083 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.045944 B = 4601.738505 C = 7003.218613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.143 4.143 4 C -0.095 4.095 5 C 0.068 3.932 6 N -0.537 5.537 7 C 0.212 3.788 8 C -0.509 4.509 9 H 0.055 0.945 10 C -0.004 4.004 11 N -0.939 5.939 12 Si 0.968 3.032 13 H -0.265 1.265 14 H -0.272 1.272 15 H -0.281 1.281 16 C 0.049 3.951 17 C 0.516 3.484 18 O -0.564 6.564 19 N -0.629 5.629 20 C 0.088 3.912 21 C -0.118 4.118 22 C -0.124 4.124 23 C 0.095 3.905 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.053 0.947 35 H -0.040 1.040 36 H 0.007 0.993 37 H 0.262 0.738 38 H 0.125 0.875 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 14.415 10.693 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.133 4.133 5 C -0.060 4.060 6 N -0.262 5.262 7 C 0.086 3.914 8 C -0.547 4.547 9 H 0.073 0.927 10 C -0.200 4.200 11 N -0.580 5.580 12 Si 0.793 3.207 13 H -0.189 1.189 14 H -0.197 1.197 15 H -0.207 1.207 16 C -0.082 4.082 17 C 0.304 3.696 18 O -0.441 6.441 19 N -0.366 5.366 20 C -0.033 4.033 21 C -0.156 4.156 22 C -0.162 4.162 23 C -0.028 4.028 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.071 0.929 35 H -0.022 1.022 36 H 0.025 0.975 37 H 0.071 0.929 38 H 0.143 0.857 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.098 13.330 10.545 20.863 hybrid contribution 1.262 -0.527 -0.807 1.588 sum -10.836 12.804 9.738 19.395 Atomic orbital electron populations 1.21772 0.93812 1.01649 1.02401 1.21099 0.96706 0.96643 0.97177 1.21843 1.00535 0.95249 1.02429 1.21545 0.93161 1.00168 0.98457 1.22075 0.96251 0.94404 0.93249 1.61755 1.27334 1.35214 1.01848 1.19380 0.83958 0.92755 0.95305 1.21416 0.92461 1.18460 1.22389 0.92722 1.25917 0.94822 0.99947 0.99363 1.70103 0.98096 1.44218 1.45618 0.85356 0.78475 0.78473 0.78446 1.18898 1.19683 1.20690 1.21938 1.03427 0.93755 0.89086 1.20802 0.76170 0.88667 0.83914 1.90744 1.49529 1.18937 1.84893 1.48699 1.71532 1.11157 1.05203 1.22371 1.02436 0.80433 0.98098 1.22653 1.01853 0.98922 0.92160 1.22775 0.99944 0.94443 0.99024 1.22352 1.00308 0.95664 0.84456 0.91830 0.91713 0.93326 0.92577 0.91643 0.93776 0.91811 0.93162 0.91077 0.94684 0.92851 1.02244 0.97514 0.92892 0.85689 0.92453 0.91221 0.89651 0.88736 0.87734 0.87330 0.91210 0.91020 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.19 71.98 0.66 -2.13 16 2 C -0.10 -2.43 2.92 -10.79 -0.03 -2.46 16 3 C -0.14 -3.07 8.95 71.98 0.64 -2.43 16 4 C -0.10 -2.91 4.73 30.59 0.14 -2.76 16 5 C 0.07 2.66 4.45 86.30 0.38 3.05 16 6 N -0.54 -25.18 4.11 -905.38 -3.72 -28.91 16 7 C 0.21 12.49 4.28 85.56 0.37 12.86 16 8 C -0.51 -31.88 8.32 25.60 0.21 -31.67 16 9 H 0.05 3.42 7.81 -2.91 -0.02 3.40 16 10 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 11 N -0.94 -60.96 13.29 21.45 0.28 -60.68 16 12 Si 0.97 48.14 29.54 68.60 2.03 50.17 16 13 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 15 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 16 C 0.05 1.83 4.46 85.56 0.38 2.21 16 17 C 0.52 21.36 7.41 87.65 0.65 22.01 16 18 O -0.56 -30.47 14.74 -3.02 -0.04 -30.51 16 19 N -0.63 -19.13 3.33 -811.84 -2.70 -21.83 16 20 C 0.09 1.67 6.48 86.73 0.56 2.23 16 21 C -0.12 -1.44 6.95 31.78 0.22 -1.22 16 22 C -0.12 -2.01 7.08 31.99 0.23 -1.78 16 23 C 0.09 2.51 6.91 86.86 0.60 3.11 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.07 6.68 -2.39 -0.02 1.05 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 1.86 6.99 -2.39 -0.02 1.84 16 33 H 0.04 1.27 6.67 -2.39 -0.02 1.25 16 34 H 0.05 2.43 7.14 -2.39 -0.02 2.42 16 35 H -0.04 -2.50 8.05 -2.39 -0.02 -2.52 16 36 H 0.01 0.45 5.81 -2.39 -0.01 0.44 16 37 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 38 H 0.13 3.62 6.76 -2.39 -0.02 3.60 16 39 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 40 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.04 1.44 8.03 -2.39 -0.02 1.42 16 Total: -1.00 -82.68 368.26 2.23 -80.45 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.90 Total: 10.08 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.48 Total: 1.23 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -6.14 Total: -111.42 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.04 Total: -30.51 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -82.68 2.23 -80.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177030962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.911 kcal (2) G-P(sol) polarization free energy of solvation -82.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds