Wall clock time and date at job start Tue Mar 31 2020 05:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34778 * 120.00200 * 2 1 4 4 O 1.21280 * 119.99598 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99857 * 179.97438 * 3 2 1 6 6 C 1.53121 * 109.52036 * 180.02562 * 5 3 2 7 7 C 1.53035 * 109.27763 * 177.62464 * 6 5 3 8 8 N 1.46851 * 109.52516 * 300.82106 * 7 6 5 9 9 C 1.46895 * 111.00368 * 185.84095 * 8 7 6 10 10 C 1.53002 * 109.47415 * 86.77622 * 9 8 7 11 11 C 1.53005 * 109.46767 * 54.59091 * 10 9 8 12 12 C 1.53000 * 109.46963 * 294.59155 * 10 9 8 13 13 C 1.52994 * 109.47174 * 174.59123 * 10 9 8 14 14 C 1.50699 * 109.47070 * 180.02562 * 13 10 9 15 15 H 1.08002 * 120.00008 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99926 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00365 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00038 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46888 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47152 * 120.00007 * 18 16 14 21 21 H 1.48498 * 109.47174 * 240.00188 * 18 16 14 22 22 C 1.46847 * 111.19700 * 61.74119 * 8 7 6 23 23 C 1.53040 * 109.52366 * 298.25842 * 22 8 7 24 24 H 1.09000 * 109.47374 * 300.00483 * 1 2 3 25 25 H 1.09002 * 109.46578 * 59.99766 * 1 2 3 26 26 H 1.08998 * 109.47384 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99553 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.52472 * 59.87631 * 5 3 2 29 29 H 1.09000 * 109.50702 * 57.68340 * 6 5 3 30 30 H 1.09004 * 109.50432 * 297.56131 * 6 5 3 31 31 H 1.09004 * 109.46714 * 180.80410 * 7 6 5 32 32 H 1.09007 * 109.45833 * 60.83208 * 7 6 5 33 33 H 1.09009 * 109.47291 * 326.77743 * 9 8 7 34 34 H 1.08997 * 109.47540 * 206.78063 * 9 8 7 35 35 H 1.09000 * 109.46953 * 185.51858 * 11 10 9 36 36 H 1.08992 * 109.46798 * 305.51770 * 11 10 9 37 37 H 1.08997 * 109.46700 * 65.51859 * 11 10 9 38 38 H 1.08991 * 109.47282 * 313.20983 * 12 10 9 39 39 H 1.09000 * 109.47104 * 73.21680 * 12 10 9 40 40 H 1.09009 * 109.46698 * 193.21174 * 12 10 9 41 41 H 1.09001 * 109.47280 * 60.00013 * 13 10 9 42 42 H 1.09002 * 109.47489 * 300.00031 * 13 10 9 43 43 H 0.97003 * 120.00011 * 180.02562 * 17 16 14 44 44 H 1.09000 * 109.46066 * 58.27690 * 22 8 7 45 45 H 1.08999 * 109.46051 * 178.24439 * 22 8 7 46 46 H 1.08997 * 109.50562 * 299.24285 * 23 22 8 47 47 H 1.09002 * 109.50310 * 179.11819 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1577 2.6103 0.0011 7 6 5.6868 2.6041 0.0616 8 7 6.1271 1.9093 1.2781 9 6 7.5839 2.0040 1.4405 10 6 7.9315 3.2963 2.1821 11 6 7.1578 3.3513 3.5010 12 6 7.5505 4.4992 1.3167 13 6 9.4337 3.3307 2.4703 14 6 9.7759 4.6033 3.2013 15 1 8.9995 5.3161 3.4372 16 6 11.0800 4.8572 3.5700 17 7 12.0254 3.9891 3.2832 18 14 11.5041 6.4344 4.4768 19 1 10.2708 7.2367 4.6778 20 1 12.0984 6.1021 5.7966 21 1 12.4802 7.2178 3.6775 22 6 5.6876 0.5081 1.2777 23 6 4.1584 0.4517 1.2536 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.9500 -0.8401 0.0004 28 1 4.0105 0.6513 -0.8878 29 1 3.7613 3.1367 0.8694 30 1 3.8315 3.1124 -0.9098 31 1 6.0539 3.6304 0.0765 32 1 6.0827 2.0895 -0.8140 33 1 8.0594 2.0089 0.4596 34 1 7.9421 1.1487 2.0134 35 1 7.3289 4.3140 3.9827 36 1 6.0931 3.2283 3.3029 37 1 7.5003 2.5508 4.1567 38 1 7.9108 4.3439 0.2999 39 1 6.4662 4.6096 1.3052 40 1 8.0032 5.4012 1.7289 41 1 9.9849 3.2915 1.5308 42 1 9.7052 2.4738 3.0868 43 1 12.9428 4.1676 3.5430 44 1 6.0836 0.0035 0.3965 45 1 6.0552 0.0120 2.1760 46 1 3.7620 0.9441 2.1415 47 1 3.8329 -0.5884 1.2376 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179827271.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:54 Heat of formation + Delta-G solvation = -74.210923 kcal Electronic energy + Delta-G solvation = -23264.040787 eV Core-core repulsion = 20058.988645 eV Total energy + Delta-G solvation = -3205.052142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.24290 -39.86825 -37.63534 -35.62700 -34.75223 -33.46606 -31.83971 -29.14424 -28.49404 -27.92450 -27.04235 -25.23556 -23.89917 -23.69527 -21.62845 -20.58002 -19.51431 -18.37806 -18.24526 -17.07865 -16.74537 -16.39582 -16.01559 -15.98444 -15.75126 -15.06916 -14.91995 -14.61067 -14.26859 -14.19721 -13.95575 -13.87057 -13.62095 -13.47403 -13.08882 -13.02270 -12.82367 -12.59705 -12.42495 -12.30788 -12.18572 -12.13747 -11.98318 -11.85263 -11.61416 -11.26885 -11.24631 -10.85516 -10.81097 -10.50154 -10.48628 -10.10433 -9.05991 -8.12544 -6.18517 1.40008 1.41376 1.53488 1.63671 2.31762 2.44675 3.04540 3.21339 3.66316 3.81485 3.90783 4.13767 4.24961 4.31994 4.37373 4.45949 4.48319 4.51781 4.59051 4.63081 4.69714 4.75296 4.83100 4.89547 4.95760 4.98240 5.01849 5.04480 5.12679 5.13028 5.22566 5.27601 5.29643 5.40091 5.49759 5.56712 5.58364 5.64975 5.73246 5.92006 5.96832 6.22305 6.36130 6.43197 6.57003 6.96709 7.28465 7.48364 8.99818 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041798 B = 0.003164 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.721568 B = 8847.415588 C = 9060.454841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.724 5.724 3 C 0.515 3.485 4 O -0.587 6.587 5 C -0.101 4.101 6 C -0.089 4.089 7 C 0.043 3.957 8 N -0.538 5.538 9 C 0.078 3.922 10 C -0.049 4.049 11 C -0.103 4.103 12 C -0.123 4.123 13 C 0.040 3.960 14 C -0.511 4.511 15 H 0.062 0.938 16 C -0.004 4.004 17 N -0.937 5.937 18 Si 0.953 3.047 19 H -0.263 1.263 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.054 3.946 23 C -0.094 4.094 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.418 0.582 28 H 0.116 0.884 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.030 0.970 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.040 0.960 41 H -0.016 1.016 42 H -0.014 1.014 43 H 0.259 0.741 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.060 0.940 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.506 -12.500 -8.060 25.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.376 5.376 3 C 0.302 3.698 4 O -0.467 6.467 5 C -0.122 4.122 6 C -0.127 4.127 7 C -0.085 4.085 8 N -0.263 5.263 9 C -0.050 4.050 10 C -0.049 4.049 11 C -0.160 4.160 12 C -0.180 4.180 13 C 0.002 3.998 14 C -0.549 4.549 15 H 0.080 0.920 16 C -0.200 4.200 17 N -0.579 5.579 18 Si 0.779 3.221 19 H -0.187 1.187 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.074 4.074 23 C -0.133 4.133 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.129 0.871 27 H 0.255 0.745 28 H 0.134 0.866 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.003 0.997 42 H 0.005 0.995 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.079 0.921 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.025 -11.578 -7.647 25.191 hybrid contribution 1.459 0.158 -0.143 1.474 sum -19.567 -11.420 -7.790 23.958 Atomic orbital electron populations 1.21652 0.79129 1.04140 1.01195 1.45781 1.08246 1.08733 1.74805 1.21016 0.90731 0.83524 0.74484 1.90688 1.71396 1.33267 1.51309 1.21386 0.90023 0.98921 1.01883 1.21294 0.94008 0.95196 1.02213 1.22492 0.95060 1.00636 0.90272 1.61814 1.11925 1.14624 1.37895 1.22016 0.87046 0.97748 0.98161 1.20431 0.94840 0.94167 0.95499 1.21457 0.99458 0.99486 0.95628 1.21879 1.00047 0.98031 0.98047 1.19021 0.91455 0.95143 0.94147 1.21642 0.93004 1.05156 1.35074 0.91957 1.25881 0.96849 0.99888 0.97423 1.70105 1.01178 1.37426 1.49173 0.85568 0.78343 0.79968 0.78220 1.18742 1.20782 1.20780 1.22183 0.95391 0.88318 1.01474 1.21530 0.94582 1.01171 0.95969 0.93574 0.93347 0.87069 0.74475 0.86615 0.92570 0.91436 0.89708 0.94503 0.95209 0.92070 0.94969 0.91438 0.95190 0.94083 0.91696 0.94068 0.99720 0.99542 0.93195 0.93864 0.90350 0.92110 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.70 127.77 1.37 2.27 16 2 N -0.72 -8.94 5.62 -484.51 -2.72 -11.66 16 3 C 0.52 10.47 7.16 87.66 0.63 11.10 16 4 O -0.59 -17.70 15.98 -3.03 -0.05 -17.74 16 5 C -0.10 -1.75 2.59 -11.46 -0.03 -1.78 16 6 C -0.09 -2.06 4.68 30.65 0.14 -1.92 16 7 C 0.04 1.07 4.93 86.32 0.43 1.49 16 8 N -0.54 -14.39 3.40 -896.34 -3.04 -17.44 16 9 C 0.08 2.60 4.24 86.30 0.37 2.96 16 10 C -0.05 -1.96 0.61 -52.18 -0.03 -1.99 16 11 C -0.10 -4.02 7.95 71.98 0.57 -3.45 16 12 C -0.12 -4.67 6.87 71.98 0.49 -4.17 16 13 C 0.04 2.07 4.04 29.85 0.12 2.19 16 14 C -0.51 -28.63 7.53 25.60 0.19 -28.43 16 15 H 0.06 3.41 5.78 -2.91 -0.02 3.39 16 16 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 17 N -0.94 -57.49 13.29 21.45 0.28 -57.20 16 18 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 19 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 20 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 22 C 0.05 1.08 5.36 86.33 0.46 1.54 16 23 C -0.09 -1.49 5.26 30.65 0.16 -1.33 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.42 2.24 8.32 -92.71 -0.77 1.47 16 28 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 30 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.08 2.35 4.16 -2.38 -0.01 2.34 16 32 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.03 1.00 7.77 -2.38 -0.02 0.99 16 34 H 0.06 2.06 7.62 -2.39 -0.02 2.04 16 35 H 0.03 1.34 6.81 -2.39 -0.02 1.32 16 36 H 0.07 2.36 7.27 -2.39 -0.02 2.34 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.04 1.48 7.67 -2.39 -0.02 1.46 16 39 H 0.06 2.18 6.29 -2.39 -0.02 2.16 16 40 H 0.04 1.74 6.30 -2.38 -0.02 1.73 16 41 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 42 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 43 H 0.26 15.02 8.31 -92.71 -0.77 14.24 16 44 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 45 H 0.08 1.59 7.90 -2.39 -0.02 1.57 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 47 H 0.10 0.89 7.66 -2.39 -0.02 0.87 16 Total: -1.00 -71.83 355.98 1.99 -69.83 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.16 Total: 8.36 kcal Atomic # 6 Polarization: -26.60 SS G_CDS: 5.33 Total: -21.27 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -5.48 Total: -86.31 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.05 Total: -17.74 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -71.83 1.99 -69.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179827271.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.379 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds