Wall clock time and date at job start Tue Mar 31 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 119.99871 * 2 1 4 4 H 1.08001 * 120.00480 * 203.63839 * 3 2 1 5 5 C 1.38817 * 119.99861 * 23.64177 * 3 2 1 6 6 N 1.31613 * 120.00579 * 9.88577 * 5 3 2 7 7 Si 1.86801 * 119.99709 * 189.88522 * 5 3 2 8 8 H 1.48499 * 109.47362 * 90.00101 * 7 5 3 9 9 H 1.48501 * 109.47011 * 209.99868 * 7 5 3 10 10 H 1.48500 * 109.47176 * 329.99945 * 7 5 3 11 11 C 1.46491 * 119.99964 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.47108 * 90.00431 * 11 2 1 13 13 C 1.53038 * 109.45906 * 175.00047 * 12 11 2 14 14 C 1.53193 * 109.31403 * 181.37332 * 13 12 11 15 15 N 1.46937 * 108.76977 * 305.36352 * 14 13 12 16 16 C 1.34776 * 120.62561 * 233.58156 * 15 14 13 17 17 O 1.21275 * 120.00180 * 354.64258 * 16 15 14 18 18 C 1.50704 * 119.99673 * 174.63454 * 16 15 14 19 19 C 1.53001 * 109.46978 * 180.13827 * 18 16 15 20 20 C 1.52994 * 109.47035 * 60.13898 * 18 16 15 21 21 C 1.53005 * 109.46947 * 300.13855 * 18 16 15 22 22 C 1.46917 * 118.73848 * 53.85964 * 15 14 13 23 23 C 1.53041 * 109.44625 * 295.05672 * 12 11 2 24 24 H 1.08996 * 109.47598 * 274.66443 * 1 2 3 25 25 H 1.09000 * 109.47197 * 34.65945 * 1 2 3 26 26 H 1.08996 * 109.47408 * 154.65810 * 1 2 3 27 27 H 0.96991 * 120.00602 * 180.02562 * 6 5 3 28 28 H 1.08994 * 109.47519 * 330.00212 * 11 2 1 29 29 H 1.09003 * 109.47397 * 210.00053 * 11 2 1 30 30 H 1.08993 * 109.46004 * 55.02516 * 12 11 2 31 31 H 1.08997 * 109.50063 * 61.41559 * 13 12 11 32 32 H 1.09002 * 109.52776 * 301.33551 * 13 12 11 33 33 H 1.08997 * 109.59212 * 185.57819 * 14 13 12 34 34 H 1.08998 * 109.70445 * 65.21731 * 14 13 12 35 35 H 1.08993 * 109.47086 * 59.99831 * 19 18 16 36 36 H 1.08993 * 109.46912 * 300.00119 * 19 18 16 37 37 H 1.08998 * 109.46860 * 180.02562 * 19 18 16 38 38 H 1.09003 * 109.47121 * 197.96667 * 20 18 16 39 39 H 1.09004 * 109.46864 * 317.95851 * 20 18 16 40 40 H 1.08992 * 109.47346 * 77.96364 * 20 18 16 41 41 H 1.09001 * 109.47105 * 300.80338 * 21 18 16 42 42 H 1.08993 * 109.47312 * 60.81096 * 21 18 16 43 43 H 1.08998 * 109.46870 * 180.81202 * 21 18 16 44 44 H 1.09003 * 109.58943 * 65.92812 * 22 15 14 45 45 H 1.09001 * 109.58595 * 186.35430 * 22 15 14 46 46 H 1.08997 * 109.49636 * 298.57480 * 23 12 11 47 47 H 1.08998 * 109.49423 * 58.63980 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1617 1.2253 -0.3750 5 6 1.5429 2.3376 0.4821 6 7 0.3916 2.2595 1.1151 7 14 2.3605 3.9986 0.2325 8 1 1.8988 4.5901 -1.0490 9 1 1.9980 4.9022 1.3538 10 1 3.8347 3.8238 0.1942 11 6 2.1974 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4418 13 6 3.3240 -2.9689 -1.4427 14 6 3.6058 -3.3890 -2.8887 15 7 2.3262 -3.5408 -3.5949 16 6 2.0320 -4.6843 -4.2447 17 8 2.8635 -5.5627 -4.3331 18 6 0.6696 -4.8715 -4.8611 19 6 0.5967 -6.2461 -5.5292 20 6 0.4297 -3.7822 -5.9083 21 6 -0.4005 -4.7764 -3.7717 22 6 1.3763 -2.4201 -3.5843 23 6 1.1172 -2.0129 -2.1258 24 1 -0.3634 0.0836 1.0242 25 1 -0.3633 0.8453 -0.5844 26 1 -0.3634 -0.9287 -0.4398 27 1 -0.0325 3.0642 1.4516 28 1 1.6084 -2.0281 0.5147 29 1 3.1499 -1.1381 0.5144 30 1 2.9647 -0.9140 -1.9808 31 1 2.8019 -3.7736 -0.9252 32 1 4.2655 -2.7603 -0.9346 33 1 4.1418 -4.3381 -2.8958 34 1 4.2074 -2.6259 -3.3825 35 1 0.7677 -7.0221 -4.7832 36 1 1.3591 -6.3138 -6.3052 37 1 -0.3885 -6.3813 -5.9754 38 1 -0.6370 -3.7119 -6.1216 39 1 0.7875 -2.8260 -5.5264 40 1 0.9674 -4.0324 -6.8227 41 1 -0.2212 -5.5434 -3.0183 42 1 -0.3580 -3.7921 -3.3056 43 1 -1.3848 -4.9262 -4.2154 44 1 1.7987 -1.5778 -4.1322 45 1 0.4408 -2.7296 -4.0503 46 1 0.6159 -2.8266 -1.6019 47 1 0.4877 -1.1234 -2.1035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181678817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:42 Heat of formation + Delta-G solvation = -13.349994 kcal Electronic energy + Delta-G solvation = -23979.487640 eV Core-core repulsion = 20777.074626 eV Total energy + Delta-G solvation = -3202.413014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73553 -37.83475 -35.98334 -35.44488 -32.90347 -31.06209 -30.47437 -27.58588 -27.38011 -27.16076 -25.85345 -24.14388 -23.08391 -21.97014 -20.46163 -19.87411 -18.55829 -16.71223 -16.52036 -16.02484 -15.32667 -15.03214 -14.53895 -14.43655 -14.12401 -13.87964 -13.68292 -13.52206 -13.13091 -12.85417 -12.56007 -12.38944 -12.29508 -12.04972 -11.94341 -11.84447 -11.76751 -11.18901 -11.12377 -11.03440 -10.94427 -10.88520 -10.68605 -10.66588 -10.23435 -10.19317 -9.88132 -9.78759 -9.76147 -9.43919 -8.59151 -8.45965 -6.69146 -5.70311 -3.18031 2.66862 3.06664 3.37470 3.44150 3.45246 4.32654 4.50048 4.60546 4.71296 4.90724 5.02646 5.14825 5.20574 5.26896 5.38211 5.42026 5.46103 5.47310 5.51110 5.57161 5.63051 5.67891 5.69992 5.78806 5.87729 5.90089 5.96163 6.04553 6.10616 6.12868 6.15427 6.27941 6.40283 6.47545 6.54645 6.67225 6.80106 6.88157 6.99839 7.38925 7.49697 7.75636 7.82076 8.22632 8.42470 9.26696 9.90054 10.39371 11.33987 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028062 B = 0.004023 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.545739 B = 6958.949482 C = 7217.221437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.602 5.602 3 C -0.251 4.251 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.157 3.843 12 C -0.107 4.107 13 C -0.126 4.126 14 C 0.113 3.887 15 N -0.604 5.604 16 C 0.523 3.477 17 O -0.551 6.551 18 C -0.086 4.086 19 C -0.124 4.124 20 C -0.161 4.161 21 C -0.155 4.155 22 C 0.083 3.917 23 C -0.125 4.125 24 H 0.026 0.974 25 H 0.041 0.959 26 H 0.000 1.000 27 H 0.251 0.749 28 H 0.033 0.967 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.058 0.942 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -12.672 -11.459 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.324 5.324 3 C -0.381 4.381 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.556 5.556 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.030 3.970 12 C -0.129 4.129 13 C -0.165 4.165 14 C -0.010 4.010 15 N -0.336 5.336 16 C 0.312 3.688 17 O -0.429 6.429 18 C -0.089 4.089 19 C -0.182 4.182 20 C -0.218 4.218 21 C -0.212 4.212 22 C -0.038 4.038 23 C -0.162 4.162 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.019 0.981 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.076 0.924 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.931 -12.982 -11.401 17.302 hybrid contribution 0.386 1.125 -0.030 1.190 sum -0.544 -11.857 -11.430 16.478 Atomic orbital electron populations 1.20856 0.82819 0.95324 0.99232 1.43857 1.01728 1.00617 1.86235 1.19183 0.98453 0.85861 1.34629 0.91572 1.25039 0.97680 0.98512 0.98406 1.70053 1.17942 1.27160 1.40404 0.86278 0.78902 0.84274 0.77219 1.21580 1.21787 1.20551 1.20741 0.95959 0.88250 0.92079 1.21835 0.94648 0.95640 1.00757 1.21929 1.00731 0.98661 0.95195 1.21608 0.84834 1.02048 0.92476 1.48100 1.18983 1.14692 1.51856 1.20574 0.89166 0.81272 0.77835 1.90644 1.49973 1.42291 1.59970 1.20750 0.93001 0.98263 0.96866 1.21648 1.01490 0.94387 1.00675 1.22315 1.02839 0.98471 0.98223 1.22204 0.97495 1.03669 0.97789 1.22595 0.93533 0.88635 0.99076 1.22107 0.98973 1.01832 0.93336 0.95575 0.94071 0.98137 0.93835 0.94887 0.93637 0.91155 0.92076 0.90998 0.89687 0.91817 0.92084 0.92129 0.92171 0.91251 0.90463 0.92053 0.92123 0.90425 0.91429 0.91369 0.87878 0.92372 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 7.87 59.85 0.47 4.29 16 2 N -0.60 -14.47 2.75 -181.13 -0.50 -14.97 16 3 C -0.25 -6.73 9.66 -15.06 -0.15 -6.87 16 4 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 5 C 0.00 0.04 5.16 -17.43 -0.09 -0.05 16 6 N -0.91 -26.21 10.58 55.49 0.59 -25.62 16 7 Si 0.90 21.58 29.56 -169.99 -5.03 16.56 16 8 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 C 0.16 3.08 5.14 -4.04 -0.02 3.06 16 12 C -0.11 -1.73 2.36 -90.58 -0.21 -1.94 16 13 C -0.13 -1.74 5.36 -26.61 -0.14 -1.88 16 14 C 0.11 1.51 6.41 -3.70 -0.02 1.49 16 15 N -0.60 -8.00 2.96 -172.50 -0.51 -8.51 16 16 C 0.52 7.29 6.48 -10.98 -0.07 7.22 16 17 O -0.55 -9.44 15.42 5.56 0.09 -9.35 16 18 C -0.09 -0.91 0.75 -155.66 -0.12 -1.03 16 19 C -0.12 -1.26 7.69 37.16 0.29 -0.97 16 20 C -0.16 -1.44 8.06 37.15 0.30 -1.14 16 21 C -0.15 -1.48 8.10 37.16 0.30 -1.18 16 22 C 0.08 1.02 3.94 -3.49 -0.01 1.00 16 23 C -0.12 -1.81 4.11 -26.39 -0.11 -1.92 16 24 H 0.03 0.68 7.37 -51.93 -0.38 0.30 16 25 H 0.04 1.05 7.27 -51.93 -0.38 0.67 16 26 H 0.00 0.00 6.17 -51.93 -0.32 -0.32 16 27 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 29 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.20 7.04 -51.93 -0.37 0.83 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.50 8.01 -51.93 -0.42 0.09 16 39 H 0.08 0.71 4.67 -51.93 -0.24 0.47 16 40 H 0.06 0.54 8.01 -51.93 -0.42 0.13 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.77 4.30 -51.93 -0.22 0.55 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 45 H 0.10 1.07 2.76 -51.93 -0.14 0.92 16 46 H 0.06 0.83 7.67 -51.93 -0.40 0.43 16 47 H 0.09 1.46 5.86 -51.93 -0.30 1.16 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -30.55 346.37 -7.92 -38.48 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.19 Total: -1.89 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 0.41 Total: 0.09 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: -0.42 Total: -49.10 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.55 -7.92 -38.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181678817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.125 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds