Wall clock time and date at job start Tue Mar 31 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47452 * 2 1 4 4 C 1.53002 * 109.46982 * 239.99858 * 2 1 3 5 5 C 1.52996 * 109.46969 * 60.00261 * 4 2 1 6 6 N 1.46905 * 109.46987 * 179.97438 * 5 4 2 7 7 C 1.48006 * 110.99759 * 298.72259 * 6 5 4 8 8 C 1.50446 * 112.82263 * 191.34447 * 7 6 5 9 9 C 1.54310 * 108.50129 * 93.72628 * 8 7 6 10 10 C 1.45879 * 112.18646 * 281.46361 * 9 8 7 11 11 C 1.54313 * 112.18424 * 61.11903 * 10 9 8 12 12 C 1.47995 * 111.00085 * 170.00132 * 6 5 4 13 13 N 1.46506 * 109.46831 * 120.00228 * 2 1 3 14 14 C 1.34777 * 119.99873 * 299.99477 * 13 2 1 15 15 O 1.21695 * 119.99811 * 0.02562 * 14 13 2 16 16 C 1.46376 * 120.00195 * 179.97438 * 14 13 2 17 17 H 1.07999 * 119.99764 * 0.02562 * 16 14 13 18 18 C 1.40045 * 119.99903 * 179.97438 * 16 14 13 19 19 N 1.30663 * 120.00494 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99500 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47364 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46997 * 120.00628 * 20 18 16 23 23 H 1.48500 * 109.47233 * 240.00230 * 20 18 16 24 24 H 1.09001 * 109.46812 * 300.00216 * 1 2 3 25 25 H 1.09002 * 109.46935 * 59.99874 * 1 2 3 26 26 H 1.08992 * 109.47061 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46952 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 29 29 H 1.09001 * 109.46832 * 59.99801 * 3 2 1 30 30 H 1.09004 * 109.46930 * 180.02562 * 4 2 1 31 31 H 1.09004 * 109.47059 * 299.99867 * 4 2 1 32 32 H 1.08992 * 109.47534 * 299.99582 * 5 4 2 33 33 H 1.08996 * 109.47134 * 60.00388 * 5 4 2 34 34 H 1.08994 * 108.80916 * 312.20579 * 7 6 5 35 35 H 1.08997 * 108.81253 * 70.48697 * 7 6 5 36 36 H 1.09006 * 109.63494 * 334.02629 * 8 7 6 37 37 H 1.08998 * 109.63632 * 213.42744 * 8 7 6 38 38 H 1.09001 * 108.93847 * 160.76446 * 9 8 7 39 39 H 1.08994 * 108.86744 * 42.11045 * 9 8 7 40 40 H 1.09003 * 108.93753 * 300.42597 * 10 9 8 41 41 H 1.08994 * 108.94199 * 181.81701 * 10 9 8 42 42 H 1.08997 * 109.63232 * 161.76103 * 11 10 9 43 43 H 1.08999 * 109.63348 * 41.16656 * 11 10 9 44 44 H 1.08994 * 108.81090 * 205.70368 * 12 6 5 45 45 H 1.09006 * 108.80978 * 324.08473 * 12 6 5 46 46 H 0.96999 * 120.00080 * 120.00080 * 13 2 1 47 47 H 0.97000 * 120.00772 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 0.0000 -2.4984 6 7 2.0202 -0.6922 -3.6979 7 6 3.4994 -0.6848 -3.7472 8 6 4.0412 -1.1355 -5.0764 9 6 4.2835 0.1102 -5.9543 10 6 3.0485 0.6198 -6.5402 11 6 2.0305 1.0560 -5.4657 12 6 1.3598 -0.1737 -4.9166 13 7 2.0183 -0.6907 1.1962 14 6 1.6928 -0.2302 2.4203 15 8 0.9928 0.7591 2.5319 16 6 2.1801 -0.9205 3.6155 17 1 2.8009 -1.7987 3.5164 18 6 1.8422 -0.4417 4.8874 19 7 1.0915 0.6211 5.0073 20 14 2.4648 -1.3224 6.4126 21 1 3.2897 -2.4892 6.0085 22 1 3.2903 -0.3892 7.2207 23 1 1.3098 -1.7885 7.2212 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4423 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7217 -1.2490 31 1 1.6767 -1.7490 -1.2492 32 1 0.4401 0.0000 -2.4985 33 1 1.8935 1.0276 -2.4985 34 1 3.8526 0.3270 -3.5485 35 1 3.8803 -1.3469 -2.9697 36 1 3.3192 -1.7915 -5.5629 37 1 4.9811 -1.6670 -4.9277 38 1 4.9741 -0.1510 -6.7562 39 1 4.7329 0.8914 -5.3413 40 1 2.6008 -0.1604 -7.1558 41 1 3.2839 1.4757 -7.1727 42 1 1.2836 1.7115 -5.9135 43 1 2.5479 1.5805 -4.6625 44 1 1.3714 -0.9511 -5.6805 45 1 0.3241 0.0693 -4.6788 46 1 2.5760 -1.4794 1.1072 47 1 0.8572 0.9526 5.8883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185751423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:47 Heat of formation + Delta-G solvation = -52.718529 kcal Electronic energy + Delta-G solvation = -23324.408629 eV Core-core repulsion = 20120.288467 eV Total energy + Delta-G solvation = -3204.120162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.63746 -38.23519 -35.77878 -34.10358 -32.38230 -32.28323 -30.74036 -28.65319 -26.53282 -26.08796 -25.98281 -24.95702 -23.05634 -20.76205 -20.32178 -19.38821 -18.17939 -17.18832 -16.46870 -15.89000 -15.28618 -15.07812 -14.71557 -14.18974 -14.04947 -13.86235 -13.62949 -13.28330 -13.20998 -12.66625 -12.56104 -12.36975 -12.33705 -11.91462 -11.72331 -11.50918 -11.24518 -11.08990 -11.04244 -10.89584 -10.84022 -10.79379 -10.71177 -10.52111 -10.41604 -10.38598 -10.14866 -10.09329 -9.98249 -8.81060 -8.14894 -7.39519 -7.38785 -6.12264 -4.58183 3.15146 3.23618 3.27882 3.79628 4.14552 4.44354 4.52480 4.64248 4.70654 4.84543 4.93321 5.06584 5.20571 5.23230 5.30203 5.41032 5.46508 5.58880 5.61924 5.64654 5.72468 5.78724 5.80457 5.86603 5.89346 5.93701 5.94910 6.01746 6.06343 6.12742 6.15446 6.30877 6.33282 6.41752 6.54057 6.63849 6.76471 7.09731 7.16872 7.23737 7.26785 7.48425 8.00438 8.24323 8.41491 9.08226 9.64897 10.65984 10.87099 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037204 B = 0.003227 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.431471 B = 8673.529660 C = 9020.645469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.187 3.813 3 C -0.158 4.158 4 C -0.115 4.115 5 C 0.061 3.939 6 N -0.550 5.550 7 C 0.061 3.939 8 C -0.121 4.121 9 C -0.122 4.122 10 C -0.116 4.116 11 C -0.151 4.151 12 C 0.060 3.940 13 N -0.760 5.760 14 C 0.560 3.440 15 O -0.575 6.575 16 C -0.547 4.547 17 H 0.065 0.935 18 C 0.089 3.911 19 N -0.768 5.768 20 Si 0.904 3.096 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.083 0.917 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.378 0.622 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -1.868 -20.371 20.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.099 3.901 3 C -0.217 4.217 4 C -0.153 4.153 5 C -0.066 4.066 6 N -0.274 5.274 7 C -0.067 4.067 8 C -0.158 4.158 9 C -0.159 4.159 10 C -0.153 4.153 11 C -0.190 4.190 12 C -0.068 4.068 13 N -0.415 5.415 14 C 0.364 3.636 15 O -0.458 6.458 16 C -0.584 4.584 17 H 0.084 0.916 18 C -0.131 4.131 19 N -0.397 5.397 20 Si 0.729 3.271 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.202 1.202 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.209 0.791 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.308 -1.463 -20.139 20.461 hybrid contribution 0.891 0.037 0.636 1.095 sum 4.199 -1.427 -19.503 20.001 Atomic orbital electron populations 1.22248 0.95844 1.01170 1.02350 1.19794 0.93435 0.91864 0.85036 1.22258 0.99859 0.97143 1.02397 1.21817 1.00464 0.99987 0.93026 1.22232 1.00200 0.95393 0.88809 1.61881 1.06390 1.56923 1.02251 1.21796 0.87118 0.99968 0.97772 1.21441 1.01150 0.97563 0.95692 1.20614 0.97826 0.97909 0.99596 1.20536 0.96212 1.00611 0.97964 1.21942 0.99005 0.99027 0.99003 1.21871 0.97555 0.95083 0.92268 1.46226 1.57532 1.32618 1.05078 1.18097 0.80074 0.84110 0.81364 1.90520 1.41339 1.28124 1.85789 1.20953 1.34012 1.13665 0.89771 0.91631 1.25672 0.93387 0.94093 0.99914 1.70020 1.27252 1.18670 1.23792 0.86375 0.79076 0.80016 0.81617 1.18855 1.20278 1.20248 0.89827 0.93879 0.93693 0.93987 0.93928 0.89765 0.92094 0.91179 0.90419 0.94584 0.94908 0.90809 0.90769 0.91255 0.92298 0.92312 0.92076 0.92555 0.91514 0.91694 0.91080 0.91483 0.79113 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.05 37.16 0.30 -2.76 16 2 C 0.19 3.53 0.83 -131.81 -0.11 3.42 16 3 C -0.16 -3.08 8.05 37.16 0.30 -2.78 16 4 C -0.11 -1.72 4.19 -26.73 -0.11 -1.83 16 5 C 0.06 0.80 4.15 -3.82 -0.02 0.79 16 6 N -0.55 -6.38 4.71 -235.91 -1.11 -7.50 16 7 C 0.06 0.65 4.32 -4.49 -0.02 0.63 16 8 C -0.12 -1.07 5.63 -27.32 -0.15 -1.22 16 9 C -0.12 -0.98 5.30 -29.42 -0.16 -1.14 16 10 C -0.12 -0.91 5.30 -29.41 -0.16 -1.07 16 11 C -0.15 -1.34 5.60 -27.32 -0.15 -1.50 16 12 C 0.06 0.59 5.16 -4.50 -0.02 0.57 16 13 N -0.76 -16.91 5.10 -48.99 -0.25 -17.16 16 14 C 0.56 15.58 7.17 -12.99 -0.09 15.49 16 15 O -0.57 -17.72 11.22 5.19 0.06 -17.67 16 16 C -0.55 -15.44 9.54 -35.63 -0.34 -15.78 16 17 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 18 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 19 N -0.77 -22.93 11.83 55.55 0.66 -22.27 16 20 Si 0.90 20.29 29.56 -169.99 -5.02 15.26 16 21 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 22 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H 0.08 1.98 6.16 -51.93 -0.32 1.66 16 25 H 0.04 0.70 6.43 -51.93 -0.33 0.37 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.70 6.43 -51.93 -0.33 0.37 16 29 H 0.08 2.00 6.16 -51.93 -0.32 1.68 16 30 H 0.06 0.89 6.67 -51.93 -0.35 0.55 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.03 6.08 -51.93 -0.32 0.71 16 33 H 0.04 0.49 6.10 -51.93 -0.32 0.17 16 34 H 0.03 0.38 6.44 -51.93 -0.33 0.04 16 35 H 0.07 0.84 6.91 -51.93 -0.36 0.48 16 36 H 0.07 0.68 7.08 -51.93 -0.37 0.31 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 40 H 0.06 0.46 7.52 -51.93 -0.39 0.07 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.67 6.74 -51.93 -0.35 0.32 16 44 H 0.07 0.66 6.59 -51.93 -0.34 0.32 16 45 H 0.07 0.65 7.64 -51.93 -0.40 0.26 16 46 H 0.38 7.58 8.45 -40.82 -0.35 7.24 16 47 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -31.80 344.55 -9.37 -41.18 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -8.07 Total: 7.76 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -0.83 Total: -4.80 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.71 Total: -46.93 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.06 Total: -17.67 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.80 -9.37 -41.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185751423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.541 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds