Wall clock time and date at job start Tue Mar 31 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47083 * 2 1 4 4 C 1.53000 * 109.47083 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47083 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46912 * 55.00162 * 5 4 3 7 7 C 1.53004 * 109.46978 * 295.00581 * 5 4 3 8 8 C 1.50696 * 109.47097 * 175.00424 * 5 4 3 9 9 O 1.21279 * 120.00150 * 359.97438 * 8 5 4 10 10 N 1.34777 * 119.99788 * 180.02562 * 8 5 4 11 11 C 1.46495 * 120.00118 * 179.97438 * 10 8 5 12 12 C 1.53039 * 109.46476 * 204.99626 * 11 10 8 13 13 C 1.53192 * 109.31624 * 178.61195 * 12 11 10 14 14 N 1.46925 * 108.89163 * 54.56131 * 13 12 11 15 15 C 1.36940 * 120.62821 * 126.46045 * 14 13 12 16 16 H 1.08000 * 119.99751 * 331.92858 * 15 14 13 17 17 C 1.38810 * 120.00078 * 151.92771 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17980 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.18147 * 17 15 14 20 20 H 1.48509 * 109.47304 * 59.99932 * 19 17 15 21 21 H 1.48501 * 109.47440 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47535 * 299.99868 * 19 17 15 23 23 C 1.46954 * 118.71946 * 306.64559 * 14 13 12 24 24 C 1.53044 * 109.46278 * 84.92375 * 11 10 8 25 25 H 1.09000 * 109.47039 * 299.99411 * 1 2 3 26 26 H 1.09000 * 109.47436 * 60.00060 * 1 2 3 27 27 H 1.08997 * 109.46684 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47039 * 240.00589 * 2 1 3 29 29 H 1.08997 * 109.47900 * 120.00170 * 2 1 3 30 30 H 1.09000 * 109.46702 * 60.00383 * 3 2 1 31 31 H 1.09000 * 109.46935 * 300.00247 * 3 2 1 32 32 H 1.09000 * 109.47039 * 60.00589 * 4 3 2 33 33 H 1.08990 * 109.47256 * 300.00070 * 4 3 2 34 34 H 1.08997 * 109.47168 * 59.99801 * 7 5 4 35 35 H 1.08998 * 109.46793 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.46957 * 299.99553 * 7 5 4 37 37 H 0.96996 * 119.99854 * 359.97438 * 10 8 5 38 38 H 1.09009 * 109.46016 * 324.97414 * 11 10 8 39 39 H 1.09005 * 109.49298 * 58.66180 * 12 11 10 40 40 H 1.08998 * 109.49763 * 298.56780 * 12 11 10 41 41 H 1.08997 * 109.58838 * 174.42439 * 13 12 11 42 42 H 1.09002 * 109.58672 * 294.71002 * 13 12 11 43 43 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.47125 * 293.56762 * 23 14 13 45 45 H 1.09000 * 109.71403 * 173.28134 * 23 14 13 46 46 H 1.09000 * 109.50000 * 301.34377 * 24 11 10 47 47 H 1.09010 * 109.49012 * 61.40617 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 -0.0013 6 1 3.6457 3.4243 0.8406 7 6 3.6745 3.5688 -1.3087 8 6 5.5819 2.8869 0.1218 9 8 6.1851 1.8379 0.2026 10 7 6.2549 4.0545 0.1431 11 6 7.7149 4.0564 0.2634 12 6 8.1745 5.3820 0.8745 13 6 9.6984 5.3666 1.0308 14 7 10.3069 5.0592 -0.2707 15 6 11.2632 5.8808 -0.8053 16 1 11.2705 6.9323 -0.5591 17 6 12.2230 5.3622 -1.6635 18 7 12.4306 4.0633 -1.7107 19 14 13.2198 6.5076 -2.7515 20 1 13.9763 7.4629 -1.9026 21 1 14.1709 5.7115 -3.5682 22 1 12.3053 7.2591 -3.6482 23 6 9.8666 3.8553 -0.9894 24 6 8.3409 3.8876 -1.1229 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8909 33 1 3.9337 0.9286 0.8890 34 1 2.5882 3.5674 -1.3977 35 1 4.0375 4.5966 -1.3089 36 1 4.1088 3.0295 -2.1505 37 1 5.7724 4.8935 0.0789 38 1 8.0275 3.2327 0.9053 39 1 7.7099 5.5124 1.8520 40 1 7.8841 6.2042 0.2206 41 1 10.0406 6.3434 1.3726 42 1 9.9836 4.6049 1.7565 43 1 13.1016 3.7009 -2.3102 44 1 10.1658 2.9687 -0.4304 45 1 10.3197 3.8324 -1.9805 46 1 7.9947 2.9544 -1.5673 47 1 8.0484 4.7237 -1.7583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305998380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:40 Heat of formation + Delta-G solvation = -54.170122 kcal Electronic energy + Delta-G solvation = -22731.109947 eV Core-core repulsion = 19526.926839 eV Total energy + Delta-G solvation = -3204.183108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.92218 -37.56857 -36.34072 -34.38160 -33.56894 -32.01170 -30.05642 -29.55715 -28.58387 -25.57821 -24.85451 -22.87412 -22.21614 -21.58847 -20.89581 -19.78696 -19.09081 -17.08368 -16.52521 -15.99039 -15.75395 -15.03026 -14.77583 -14.24268 -14.04891 -13.80533 -13.50010 -13.43203 -13.40610 -13.00823 -12.83341 -12.55108 -12.37182 -12.31066 -11.88666 -11.50117 -11.47994 -11.15096 -11.11821 -11.09108 -10.90915 -10.82302 -10.71210 -10.63562 -10.37126 -10.24359 -10.04287 -9.74084 -9.72810 -9.32536 -8.65862 -8.40042 -6.66887 -5.77203 -3.20461 2.87523 3.38279 3.42962 3.44978 3.45953 4.50310 4.50967 4.63928 4.69964 4.89761 4.94824 4.98925 5.23305 5.26855 5.36202 5.42862 5.44438 5.47492 5.51008 5.56249 5.65678 5.66964 5.74274 5.77963 5.84943 5.86672 5.95378 6.01514 6.10184 6.18309 6.25505 6.26803 6.39878 6.46565 6.63622 6.66647 6.79395 6.94032 6.98340 7.39360 7.69098 7.79486 7.80345 8.46210 8.49748 9.22228 9.85553 10.42600 11.31442 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038247 B = 0.002920 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.903048 B = 9585.411178 C = 9735.867013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.101 4.101 5 C -0.111 4.111 6 H 0.093 0.907 7 C -0.145 4.145 8 C 0.512 3.488 9 O -0.541 6.541 10 N -0.725 5.725 11 C 0.150 3.850 12 C -0.138 4.138 13 C 0.149 3.851 14 N -0.592 5.592 15 C -0.255 4.255 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.174 3.826 24 C -0.145 4.145 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.393 0.607 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.089 0.911 46 H 0.052 0.948 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.025 -1.935 3.315 22.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.139 4.139 5 C -0.133 4.133 6 H 0.111 0.889 7 C -0.202 4.202 8 C 0.297 3.703 9 O -0.418 6.418 10 N -0.375 5.375 11 C 0.046 3.954 12 C -0.178 4.178 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.385 4.385 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.047 3.953 24 C -0.185 4.185 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.107 0.893 46 H 0.071 0.929 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.420 -2.787 3.278 21.848 hybrid contribution 0.313 0.988 -0.628 1.212 sum -21.107 -1.799 2.650 21.349 Atomic orbital electron populations 1.21778 0.96066 1.01470 1.01655 1.21531 0.95568 0.97035 1.02240 1.21691 0.95325 0.96808 1.01980 1.21408 0.94470 0.94363 1.03618 1.21339 0.92542 0.99151 1.00234 0.88927 1.21819 1.01929 1.00329 0.96137 1.20615 0.89639 0.83969 0.76037 1.90701 1.70319 1.31407 1.49338 1.46347 1.08604 1.08129 1.74438 1.21023 0.77378 0.98725 0.98225 1.22327 0.99992 0.96185 0.99332 1.20832 0.89275 0.98802 0.88960 1.44083 1.43929 1.27345 1.16175 1.19124 1.04825 0.90006 1.24500 0.91723 1.25070 0.96993 0.95756 1.01825 1.70028 1.34722 1.10676 1.39117 0.86364 0.79618 0.80032 0.80692 1.20874 1.21631 1.21060 1.20751 0.87442 0.88058 0.99012 1.22545 1.00391 1.00323 0.95290 0.92864 0.92838 0.92912 0.91958 0.91988 0.92119 0.91767 0.91272 0.91143 0.91455 0.92209 0.91991 0.77317 0.90171 0.92695 0.91922 0.92387 0.96244 0.93522 0.96190 0.89329 0.92941 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -0.95 4.97 -26.73 -0.13 -1.08 16 4 C -0.10 -1.05 4.03 -26.73 -0.11 -1.15 16 5 C -0.11 -1.15 2.72 -91.77 -0.25 -1.40 16 6 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.14 -1.26 8.84 37.16 0.33 -0.93 16 8 C 0.51 7.54 7.12 -10.99 -0.08 7.46 16 9 O -0.54 -10.37 15.58 5.56 0.09 -10.29 16 10 N -0.73 -10.23 4.97 -53.77 -0.27 -10.50 16 11 C 0.15 2.65 2.42 -67.89 -0.16 2.49 16 12 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 13 C 0.15 3.09 6.51 -3.71 -0.02 3.07 16 14 N -0.59 -14.96 3.00 -172.30 -0.52 -15.48 16 15 C -0.25 -7.01 9.58 -15.06 -0.14 -7.15 16 16 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 17 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 18 N -0.90 -26.57 11.20 55.49 0.62 -25.95 16 19 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.17 4.30 5.30 -3.70 -0.02 4.28 16 24 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.83 7.95 -51.93 -0.41 0.42 16 34 H 0.07 0.47 6.56 -51.93 -0.34 0.12 16 35 H 0.06 0.48 7.57 -51.93 -0.39 0.09 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.39 4.38 8.02 -40.82 -0.33 4.05 16 38 H 0.08 1.61 7.58 -51.92 -0.39 1.22 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -31.52 365.70 -9.19 -40.71 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.83 Total: 1.02 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -0.77 Total: -1.77 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.16 Total: -51.93 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.52 -9.19 -40.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305998380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.465 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds