Wall clock time and date at job start Tue Mar 31 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47083 * 2 1 4 4 C 1.53000 * 109.47083 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47083 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46912 * 55.00162 * 5 4 3 7 7 C 1.53004 * 109.46978 * 295.00581 * 5 4 3 8 8 C 1.50696 * 109.47097 * 175.00424 * 5 4 3 9 9 O 1.21279 * 120.00150 * 359.97438 * 8 5 4 10 10 N 1.34777 * 119.99788 * 180.02562 * 8 5 4 11 11 C 1.46495 * 120.00118 * 179.97438 * 10 8 5 12 12 C 1.53039 * 109.46476 * 204.99626 * 11 10 8 13 13 C 1.53192 * 109.31624 * 178.61195 * 12 11 10 14 14 N 1.46925 * 108.89163 * 54.56131 * 13 12 11 15 15 C 1.36940 * 120.62821 * 126.46045 * 14 13 12 16 16 H 1.08000 * 119.99751 * 331.92858 * 15 14 13 17 17 C 1.38810 * 120.00078 * 151.92771 * 15 14 13 18 18 N 1.31619 * 119.99689 * 343.17980 * 17 15 14 19 19 Si 1.86795 * 119.99988 * 163.18147 * 17 15 14 20 20 H 1.48509 * 109.47304 * 59.99932 * 19 17 15 21 21 H 1.48501 * 109.47440 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47535 * 299.99868 * 19 17 15 23 23 C 1.46954 * 118.71946 * 306.64559 * 14 13 12 24 24 C 1.53044 * 109.46278 * 84.92375 * 11 10 8 25 25 H 1.09000 * 109.47039 * 299.99411 * 1 2 3 26 26 H 1.09000 * 109.47436 * 60.00060 * 1 2 3 27 27 H 1.08997 * 109.46684 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47039 * 240.00589 * 2 1 3 29 29 H 1.08997 * 109.47900 * 120.00170 * 2 1 3 30 30 H 1.09000 * 109.46702 * 60.00383 * 3 2 1 31 31 H 1.09000 * 109.46935 * 300.00247 * 3 2 1 32 32 H 1.09000 * 109.47039 * 60.00589 * 4 3 2 33 33 H 1.08990 * 109.47256 * 300.00070 * 4 3 2 34 34 H 1.08997 * 109.47168 * 59.99801 * 7 5 4 35 35 H 1.08998 * 109.46793 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.46957 * 299.99553 * 7 5 4 37 37 H 0.96996 * 119.99854 * 359.97438 * 10 8 5 38 38 H 1.09009 * 109.46016 * 324.97414 * 11 10 8 39 39 H 1.09005 * 109.49298 * 58.66180 * 12 11 10 40 40 H 1.08998 * 109.49763 * 298.56780 * 12 11 10 41 41 H 1.08997 * 109.58838 * 174.42439 * 13 12 11 42 42 H 1.09002 * 109.58672 * 294.71002 * 13 12 11 43 43 H 0.97000 * 119.99637 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.47125 * 293.56762 * 23 14 13 45 45 H 1.09000 * 109.71403 * 173.28134 * 23 14 13 46 46 H 1.09000 * 109.50000 * 301.34377 * 24 11 10 47 47 H 1.09010 * 109.49012 * 61.40617 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 -0.0013 6 1 3.6457 3.4243 0.8406 7 6 3.6745 3.5688 -1.3087 8 6 5.5819 2.8869 0.1218 9 8 6.1851 1.8379 0.2026 10 7 6.2549 4.0545 0.1431 11 6 7.7149 4.0564 0.2634 12 6 8.1745 5.3820 0.8745 13 6 9.6984 5.3666 1.0308 14 7 10.3069 5.0592 -0.2707 15 6 11.2632 5.8808 -0.8053 16 1 11.2705 6.9323 -0.5591 17 6 12.2230 5.3622 -1.6635 18 7 12.4306 4.0633 -1.7107 19 14 13.2198 6.5076 -2.7515 20 1 13.9763 7.4629 -1.9026 21 1 14.1709 5.7115 -3.5682 22 1 12.3053 7.2591 -3.6482 23 6 9.8666 3.8553 -0.9894 24 6 8.3409 3.8876 -1.1229 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8935 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8909 33 1 3.9337 0.9286 0.8890 34 1 2.5882 3.5674 -1.3977 35 1 4.0375 4.5966 -1.3089 36 1 4.1088 3.0295 -2.1505 37 1 5.7724 4.8935 0.0789 38 1 8.0275 3.2327 0.9053 39 1 7.7099 5.5124 1.8520 40 1 7.8841 6.2042 0.2206 41 1 10.0406 6.3434 1.3726 42 1 9.9836 4.6049 1.7565 43 1 13.1016 3.7009 -2.3102 44 1 10.1658 2.9687 -0.4304 45 1 10.3197 3.8324 -1.9805 46 1 7.9947 2.9544 -1.5673 47 1 8.0484 4.7237 -1.7583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305998380.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:40 Heat of formation + Delta-G solvation = -73.098898 kcal Electronic energy + Delta-G solvation = -22731.930760 eV Core-core repulsion = 19526.926839 eV Total energy + Delta-G solvation = -3205.003921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15924 -39.12475 -37.24517 -35.99361 -34.45807 -33.69852 -31.77459 -31.21910 -29.38779 -27.06074 -26.02209 -24.18611 -23.91958 -22.79442 -21.73739 -21.20402 -20.46355 -18.84164 -17.84421 -17.27229 -16.70928 -16.65842 -15.98512 -15.72347 -15.37149 -15.13501 -14.91165 -14.76964 -14.39029 -14.23293 -14.12319 -13.97955 -13.48042 -13.20730 -13.06009 -13.01950 -12.65071 -12.58320 -12.56268 -12.16664 -12.13738 -12.08797 -11.88901 -11.84154 -11.81647 -11.54968 -11.52633 -11.38116 -11.30415 -10.62516 -10.58488 -9.97494 -8.72755 -7.88492 -5.35355 1.46952 1.49721 1.56641 1.70586 2.24705 2.50917 3.27279 3.62285 3.73072 3.77935 3.88619 3.97094 4.07657 4.23504 4.31128 4.31879 4.32687 4.45404 4.53426 4.64385 4.64810 4.78215 4.81450 4.86055 4.88250 4.94966 5.01194 5.04313 5.05821 5.06764 5.11028 5.15401 5.24852 5.29818 5.31741 5.40377 5.44147 5.50065 5.55102 5.59807 5.62650 5.67488 6.37169 6.65747 7.11799 7.35687 7.82699 8.35942 9.18665 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038247 B = 0.002920 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.903048 B = 9585.411178 C = 9735.867013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.112 4.112 4 C -0.099 4.099 5 C -0.100 4.100 6 H 0.124 0.876 7 C -0.142 4.142 8 C 0.506 3.494 9 O -0.592 6.592 10 N -0.711 5.711 11 C 0.160 3.840 12 C -0.121 4.121 13 C 0.140 3.860 14 N -0.610 5.610 15 C -0.262 4.262 16 H 0.074 0.926 17 C -0.056 4.056 18 N -0.940 5.940 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.298 1.298 22 H -0.276 1.276 23 C 0.183 3.817 24 C -0.128 4.128 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.414 0.586 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.009 0.991 43 H 0.249 0.751 44 H -0.014 1.014 45 H 0.055 0.945 46 H 0.042 0.958 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.822 0.556 3.695 25.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.121 4.121 6 H 0.142 0.858 7 C -0.199 4.199 8 C 0.294 3.706 9 O -0.472 6.472 10 N -0.362 5.362 11 C 0.055 3.945 12 C -0.160 4.160 13 C 0.015 3.985 14 N -0.333 5.333 15 C -0.392 4.392 16 H 0.092 0.908 17 C -0.251 4.251 18 N -0.586 5.586 19 Si 0.799 3.201 20 H -0.198 1.198 21 H -0.224 1.224 22 H -0.202 1.202 23 C 0.056 3.944 24 C -0.169 4.169 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.251 0.749 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.058 0.942 44 H 0.004 0.996 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.273 -0.243 3.681 24.551 hybrid contribution 1.193 0.158 -0.685 1.385 sum -23.079 -0.085 2.995 23.273 Atomic orbital electron populations 1.21755 0.94852 1.01852 1.02241 1.21554 0.96622 0.97010 1.01564 1.21639 0.92967 0.97072 1.03228 1.21378 0.96461 0.94226 1.01663 1.21371 0.88707 0.99575 1.02485 0.85850 1.21845 1.03554 1.00401 0.94145 1.21525 0.91577 0.83056 0.74434 1.90691 1.71755 1.33298 1.51484 1.46073 1.06886 1.09236 1.73979 1.20629 0.79568 0.98558 0.95735 1.22124 0.96719 0.95594 1.01558 1.21048 0.91944 0.98854 0.86698 1.44336 1.44091 1.26913 1.17974 1.19540 1.04777 0.90734 1.24187 0.90793 1.25917 0.98588 0.97114 1.03488 1.70211 1.35661 1.12650 1.40044 0.85282 0.78011 0.78020 0.78778 1.19768 1.22401 1.20152 1.20456 0.90246 0.87081 0.96608 1.22281 0.97130 1.00063 0.97386 0.92233 0.92234 0.92739 0.92756 0.92723 0.90730 0.90448 0.93383 0.93153 0.88868 0.90912 0.93764 0.74880 0.92944 0.89025 0.90530 0.91321 0.97257 0.94173 0.99577 0.92702 0.93973 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.13 -1.84 5.93 30.60 0.18 -1.66 16 3 C -0.11 -1.49 4.97 30.60 0.15 -1.34 16 4 C -0.10 -1.97 4.03 30.60 0.12 -1.85 16 5 C -0.10 -1.82 2.72 -11.54 -0.03 -1.85 16 6 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 7 C -0.14 -2.01 8.84 71.98 0.64 -1.37 16 8 C 0.51 14.35 7.12 87.66 0.62 14.97 16 9 O -0.59 -23.23 15.58 -3.03 -0.05 -23.28 16 10 N -0.71 -18.45 4.97 -442.41 -2.20 -20.65 16 11 C 0.16 5.52 2.42 45.02 0.11 5.63 16 12 C -0.12 -3.72 5.55 30.67 0.17 -3.55 16 13 C 0.14 5.72 6.51 86.36 0.56 6.28 16 14 N -0.61 -31.14 3.00 -699.03 -2.10 -33.23 16 15 C -0.26 -14.46 9.58 84.03 0.81 -13.65 16 16 H 0.07 3.87 7.88 -2.91 -0.02 3.85 16 17 C -0.06 -3.18 4.92 84.86 0.42 -2.77 16 18 N -0.94 -57.52 11.20 21.65 0.24 -57.28 16 19 Si 0.97 45.19 29.59 68.60 2.03 47.22 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 C 0.18 9.44 5.30 86.36 0.46 9.89 16 24 C -0.13 -5.28 5.65 30.67 0.17 -5.10 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.85 6.56 -2.39 -0.02 0.84 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.05 1.19 7.95 -2.39 -0.02 1.17 16 34 H 0.09 0.88 6.56 -2.39 -0.02 0.86 16 35 H 0.07 0.86 7.57 -2.39 -0.02 0.84 16 36 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.41 7.54 8.02 -92.71 -0.74 6.79 16 38 H 0.05 2.14 7.58 -2.38 -0.02 2.12 16 39 H 0.09 2.23 8.14 -2.38 -0.02 2.22 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.07 2.63 7.93 -2.39 -0.02 2.61 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 45 H 0.05 3.18 6.07 -2.39 -0.01 3.17 16 46 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -72.02 365.70 3.20 -68.83 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.17 Total: 15.70 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 5.09 Total: 2.69 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.05 Total: -111.16 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.05 Total: -23.28 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -72.02 3.20 -68.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305998380.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.270 kcal (2) G-P(sol) polarization free energy of solvation -72.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds