Wall clock time and date at job start Tue Mar 31 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 C 1.52994 * 109.46862 * 119.99404 * 2 1 3 5 5 H 1.09000 * 109.46799 * 61.07015 * 4 2 1 6 6 C 1.50696 * 109.47389 * 301.06883 * 4 2 1 7 7 O 1.21283 * 120.00191 * 264.45055 * 6 4 2 8 8 N 1.34783 * 119.99913 * 84.46048 * 6 4 2 9 9 C 1.46500 * 119.99817 * 184.42870 * 8 6 4 10 10 C 1.52997 * 109.47085 * 179.97438 * 9 8 6 11 11 C 1.50692 * 109.47328 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00281 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00388 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99631 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00236 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47681 * 59.99625 * 15 13 11 17 17 H 1.48497 * 109.47174 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46700 * 299.99554 * 15 13 11 19 19 N 1.46902 * 109.47104 * 181.06533 * 4 2 1 20 20 C 1.46850 * 111.00274 * 300.60209 * 19 4 2 21 21 C 1.53036 * 109.52243 * 174.15918 * 20 19 4 22 22 C 1.53114 * 109.27929 * 59.17901 * 21 20 19 23 23 C 1.53119 * 109.16062 * 302.34001 * 22 21 20 24 24 C 1.46843 * 111.00138 * 176.38574 * 19 4 2 25 25 H 1.09003 * 109.47192 * 300.36789 * 1 2 3 26 26 H 1.09001 * 109.46955 * 60.36555 * 1 2 3 27 27 H 1.08993 * 109.47188 * 180.36200 * 1 2 3 28 28 H 1.08997 * 109.47369 * 239.99697 * 2 1 3 29 29 H 1.08994 * 109.47691 * 62.88547 * 3 2 1 30 30 H 1.09001 * 109.47268 * 182.88958 * 3 2 1 31 31 H 1.09001 * 109.46936 * 302.88657 * 3 2 1 32 32 H 0.96993 * 119.99886 * 4.41888 * 8 6 4 33 33 H 1.08998 * 109.47260 * 299.99708 * 9 8 6 34 34 H 1.09001 * 109.47229 * 59.99399 * 9 8 6 35 35 H 1.09007 * 109.46961 * 300.00250 * 10 9 8 36 36 H 1.09001 * 109.47246 * 59.99816 * 10 9 8 37 37 H 0.97002 * 119.99791 * 180.02562 * 14 13 11 38 38 H 1.08992 * 109.46007 * 294.17369 * 20 19 4 39 39 H 1.09001 * 109.45999 * 54.14459 * 20 19 4 40 40 H 1.09007 * 109.50182 * 299.23543 * 21 20 19 41 41 H 1.08997 * 109.50059 * 179.11825 * 21 20 19 42 42 H 1.09002 * 109.52379 * 182.44394 * 22 21 20 43 43 H 1.08997 * 109.57781 * 62.28060 * 22 21 20 44 44 H 1.08997 * 109.50758 * 297.71669 * 23 22 21 45 45 H 1.09000 * 109.53724 * 177.61532 * 23 22 21 46 46 H 1.08998 * 109.46651 * 305.86035 * 24 19 4 47 47 H 1.09005 * 109.46352 * 65.84052 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6923 -1.7541 1.2398 6 6 1.5161 -0.0261 2.4795 7 8 2.1979 0.8027 3.0445 8 7 0.2899 -0.3257 2.9521 9 6 -0.2586 0.4177 4.0891 10 6 -1.6533 -0.1158 4.4222 11 6 -2.2178 0.6492 5.5913 12 1 -1.6399 1.4376 6.0506 13 6 -3.4722 0.3429 6.0748 14 7 -4.1763 -0.6167 5.5152 15 14 -4.1723 1.2918 7.5235 16 1 -4.2644 2.7321 7.1740 17 1 -5.5259 0.7738 7.8469 18 1 -3.2832 1.1240 8.7011 19 7 3.5087 -0.6989 1.2623 20 6 4.0557 -1.3564 0.0685 21 6 5.5764 -1.1872 0.0430 22 6 6.1753 -1.8060 1.3090 23 6 5.5536 -1.1369 2.5379 24 6 4.0334 -1.3076 2.4913 25 1 -0.3634 0.5195 0.8867 26 1 -0.3633 0.5082 -0.8933 27 1 -0.3633 -1.0276 0.0065 28 1 1.8934 -0.5139 -0.8899 29 1 1.7196 1.9412 0.9146 30 1 3.1288 1.4430 -0.0518 31 1 1.6350 1.9710 -0.8630 32 1 -0.2293 -1.0333 2.5394 33 1 0.3941 0.2938 4.9532 34 1 -0.3260 1.4752 3.8334 35 1 -2.3058 0.0084 3.5579 36 1 -1.5863 -1.1733 4.6778 37 1 -5.0589 -0.8320 5.8551 38 1 3.8087 -2.4177 0.0933 39 1 3.6248 -0.9041 -0.8247 40 1 5.8239 -0.1263 0.0042 41 1 5.9836 -1.6887 -0.8349 42 1 7.2540 -1.6494 1.3158 43 1 5.9622 -2.8747 1.3291 44 1 5.8007 -0.0754 2.5385 45 1 5.9444 -1.6020 3.4430 46 1 3.5865 -0.8201 3.3576 47 1 3.7868 -2.3693 2.5046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330803752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:33 Heat of formation + Delta-G solvation = -58.195958 kcal Electronic energy + Delta-G solvation = -23513.704317 eV Core-core repulsion = 20309.346636 eV Total energy + Delta-G solvation = -3204.357681 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39220 -38.20308 -35.72130 -34.83798 -32.84557 -32.45065 -30.87915 -29.75357 -27.09756 -26.92127 -24.70857 -23.38939 -23.09424 -21.27852 -20.59524 -19.85116 -19.14526 -16.78482 -16.66408 -16.15419 -15.66375 -14.86837 -14.75835 -14.51733 -14.35340 -14.10293 -14.03540 -13.58018 -13.46801 -13.20533 -12.76743 -12.57150 -12.38142 -12.23864 -12.01412 -11.94076 -11.28664 -11.22768 -11.17369 -11.00513 -10.96991 -10.85240 -10.75153 -10.65933 -10.49790 -10.27336 -10.24447 -9.71801 -9.40359 -9.06162 -8.50680 -8.33294 -8.25691 -6.09516 -4.12338 3.03618 3.31030 3.34779 3.37086 3.46784 3.96039 4.41500 4.68314 4.69048 4.77528 4.86473 4.95563 5.08010 5.15732 5.27452 5.27840 5.29033 5.35913 5.45749 5.51063 5.59130 5.64523 5.76069 5.79437 5.82881 5.87314 5.96361 6.02146 6.07929 6.11676 6.15024 6.29244 6.32965 6.35663 6.39086 6.55517 6.74828 6.94635 6.98895 7.08514 7.52094 7.61671 7.88813 8.06099 8.28569 8.72305 8.93568 9.52457 11.02003 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026511 B = 0.003566 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.899403 B = 7850.146514 C = 8390.869237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.081 4.081 3 C -0.139 4.139 4 C 0.071 3.929 5 H 0.054 0.946 6 C 0.514 3.486 7 O -0.528 6.528 8 N -0.724 5.724 9 C 0.123 3.877 10 C 0.014 3.986 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.276 1.276 19 N -0.510 5.510 20 C 0.052 3.948 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.112 4.112 24 C 0.049 3.951 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.395 0.605 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.021 0.979 37 H 0.262 0.738 38 H 0.030 0.970 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.022 -3.761 -13.657 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.100 4.100 3 C -0.196 4.196 4 C -0.041 4.041 5 H 0.072 0.928 6 C 0.299 3.701 7 O -0.405 6.405 8 N -0.375 5.375 9 C 0.001 3.999 10 C -0.024 4.024 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 N -0.235 5.235 20 C -0.076 4.076 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.150 4.150 24 C -0.079 4.079 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.229 0.771 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.107 0.893 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 16.481 -2.743 -13.219 21.305 hybrid contribution -1.100 -0.867 0.624 1.533 sum 15.382 -3.610 -12.594 20.205 Atomic orbital electron populations 1.22054 0.94374 1.02199 1.03304 1.21077 0.95874 0.97612 0.95399 1.21733 1.01931 0.94368 1.01587 1.21714 0.89002 0.98304 0.95090 0.92813 1.20190 0.81746 0.83377 0.84794 1.90665 1.56994 1.33715 1.59109 1.46465 1.17343 1.38784 1.34957 1.21686 0.97023 0.95098 0.86081 1.19306 0.88917 0.96913 0.97243 1.21017 1.01329 1.18702 1.15014 0.92332 1.24992 0.96914 0.95190 0.97149 1.69946 1.11982 1.30030 1.41368 0.86578 0.78064 0.80228 0.82705 1.20098 1.21253 1.20108 1.61638 1.04374 1.55336 1.02168 1.22182 0.95515 0.96325 0.93559 1.21559 0.94330 1.01877 0.97450 1.21592 0.99664 0.99458 0.95189 1.21526 0.94327 1.01791 0.97384 1.22225 0.95852 0.96301 0.93473 0.91169 0.92057 0.92527 0.90547 0.92089 0.91532 0.93513 0.77084 0.92676 0.92681 0.95970 0.96066 0.92803 0.95193 0.90294 0.90989 0.91780 0.92033 0.92528 0.90881 0.91783 0.89258 0.95611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.43 37.16 0.31 -1.56 16 2 C -0.08 -0.93 2.35 -90.62 -0.21 -1.14 16 3 C -0.14 -1.77 8.77 37.16 0.33 -1.44 16 4 C 0.07 0.93 1.72 -68.87 -0.12 0.81 16 5 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 6 C 0.51 8.65 4.34 -10.98 -0.05 8.60 16 7 O -0.53 -10.68 14.42 5.56 0.08 -10.60 16 8 N -0.72 -12.55 4.20 -60.29 -0.25 -12.80 16 9 C 0.12 2.61 5.62 -4.04 -0.02 2.59 16 10 C 0.01 0.34 5.09 -27.89 -0.14 0.19 16 11 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 12 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 15 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 N -0.51 -6.46 3.51 -228.08 -0.80 -7.26 16 20 C 0.05 0.52 5.21 -3.83 -0.02 0.50 16 21 C -0.11 -1.01 6.09 -26.65 -0.16 -1.17 16 22 C -0.12 -1.09 6.00 -26.61 -0.16 -1.25 16 23 C -0.11 -1.23 6.09 -26.65 -0.16 -1.40 16 24 C 0.05 0.64 5.09 -3.83 -0.02 0.62 16 25 H 0.07 0.98 6.28 -51.93 -0.33 0.66 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.75 6.33 -51.93 -0.33 0.42 16 29 H 0.06 0.96 6.71 -51.93 -0.35 0.61 16 30 H 0.07 0.86 7.67 -51.93 -0.40 0.46 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.40 6.10 8.04 -40.82 -0.33 5.77 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.02 0.57 8.14 -51.92 -0.42 0.14 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.72 6.01 -51.93 -0.31 0.41 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.43 5.84 -51.93 -0.30 1.13 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -30.27 358.83 -9.34 -39.61 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.65 Total: 2.48 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -0.84 Total: -7.86 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: -0.32 Total: -45.41 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.27 -9.34 -39.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330803752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.590 kcal (2) G-P(sol) polarization free energy of solvation -30.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds