Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47003 * 2 1 4 4 C 1.52994 * 109.46862 * 119.99404 * 2 1 3 5 5 H 1.09000 * 109.46799 * 61.07015 * 4 2 1 6 6 C 1.50696 * 109.47389 * 301.06883 * 4 2 1 7 7 O 1.21283 * 120.00191 * 264.45055 * 6 4 2 8 8 N 1.34783 * 119.99913 * 84.46048 * 6 4 2 9 9 C 1.46500 * 119.99817 * 184.42870 * 8 6 4 10 10 C 1.52997 * 109.47085 * 179.97438 * 9 8 6 11 11 C 1.50692 * 109.47328 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00281 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00388 * 180.02562 * 11 10 9 14 14 N 1.31517 * 119.99631 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00236 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47681 * 59.99625 * 15 13 11 17 17 H 1.48497 * 109.47174 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46700 * 299.99554 * 15 13 11 19 19 N 1.46902 * 109.47104 * 181.06533 * 4 2 1 20 20 C 1.46850 * 111.00274 * 300.60209 * 19 4 2 21 21 C 1.53036 * 109.52243 * 174.15918 * 20 19 4 22 22 C 1.53114 * 109.27929 * 59.17901 * 21 20 19 23 23 C 1.53119 * 109.16062 * 302.34001 * 22 21 20 24 24 C 1.46843 * 111.00138 * 176.38574 * 19 4 2 25 25 H 1.09003 * 109.47192 * 300.36789 * 1 2 3 26 26 H 1.09001 * 109.46955 * 60.36555 * 1 2 3 27 27 H 1.08993 * 109.47188 * 180.36200 * 1 2 3 28 28 H 1.08997 * 109.47369 * 239.99697 * 2 1 3 29 29 H 1.08994 * 109.47691 * 62.88547 * 3 2 1 30 30 H 1.09001 * 109.47268 * 182.88958 * 3 2 1 31 31 H 1.09001 * 109.46936 * 302.88657 * 3 2 1 32 32 H 0.96993 * 119.99886 * 4.41888 * 8 6 4 33 33 H 1.08998 * 109.47260 * 299.99708 * 9 8 6 34 34 H 1.09001 * 109.47229 * 59.99399 * 9 8 6 35 35 H 1.09007 * 109.46961 * 300.00250 * 10 9 8 36 36 H 1.09001 * 109.47246 * 59.99816 * 10 9 8 37 37 H 0.97002 * 119.99791 * 180.02562 * 14 13 11 38 38 H 1.08992 * 109.46007 * 294.17369 * 20 19 4 39 39 H 1.09001 * 109.45999 * 54.14459 * 20 19 4 40 40 H 1.09007 * 109.50182 * 299.23543 * 21 20 19 41 41 H 1.08997 * 109.50059 * 179.11825 * 21 20 19 42 42 H 1.09002 * 109.52379 * 182.44394 * 22 21 20 43 43 H 1.08997 * 109.57781 * 62.28060 * 22 21 20 44 44 H 1.08997 * 109.50758 * 297.71669 * 23 22 21 45 45 H 1.09000 * 109.53724 * 177.61532 * 23 22 21 46 46 H 1.08998 * 109.46651 * 305.86035 * 24 19 4 47 47 H 1.09005 * 109.46352 * 65.84052 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 1.6923 -1.7541 1.2398 6 6 1.5161 -0.0261 2.4795 7 8 2.1979 0.8027 3.0445 8 7 0.2899 -0.3257 2.9521 9 6 -0.2586 0.4177 4.0891 10 6 -1.6533 -0.1158 4.4222 11 6 -2.2178 0.6492 5.5913 12 1 -1.6399 1.4376 6.0506 13 6 -3.4722 0.3429 6.0748 14 7 -4.1763 -0.6167 5.5152 15 14 -4.1723 1.2918 7.5235 16 1 -4.2644 2.7321 7.1740 17 1 -5.5259 0.7738 7.8469 18 1 -3.2832 1.1240 8.7011 19 7 3.5087 -0.6989 1.2623 20 6 4.0557 -1.3564 0.0685 21 6 5.5764 -1.1872 0.0430 22 6 6.1753 -1.8060 1.3090 23 6 5.5536 -1.1369 2.5379 24 6 4.0334 -1.3076 2.4913 25 1 -0.3634 0.5195 0.8867 26 1 -0.3633 0.5082 -0.8933 27 1 -0.3633 -1.0276 0.0065 28 1 1.8934 -0.5139 -0.8899 29 1 1.7196 1.9412 0.9146 30 1 3.1288 1.4430 -0.0518 31 1 1.6350 1.9710 -0.8630 32 1 -0.2293 -1.0333 2.5394 33 1 0.3941 0.2938 4.9532 34 1 -0.3260 1.4752 3.8334 35 1 -2.3058 0.0084 3.5579 36 1 -1.5863 -1.1733 4.6778 37 1 -5.0589 -0.8320 5.8551 38 1 3.8087 -2.4177 0.0933 39 1 3.6248 -0.9041 -0.8247 40 1 5.8239 -0.1263 0.0042 41 1 5.9836 -1.6887 -0.8349 42 1 7.2540 -1.6494 1.3158 43 1 5.9622 -2.8747 1.3291 44 1 5.8007 -0.0754 2.5385 45 1 5.9444 -1.6020 3.4430 46 1 3.5865 -0.8201 3.3576 47 1 3.7868 -2.3693 2.5046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330803752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = -76.594766 kcal Electronic energy + Delta-G solvation = -23514.502149 eV Core-core repulsion = 20309.346636 eV Total energy + Delta-G solvation = -3205.155513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.58292 -39.32547 -36.76813 -36.54894 -34.79628 -33.37716 -31.79723 -31.54228 -28.33793 -27.89787 -26.50070 -24.31347 -24.09991 -22.96538 -21.97290 -20.75195 -20.29857 -18.57715 -17.88145 -17.59593 -16.91320 -16.47556 -16.17067 -15.77507 -15.57619 -15.32204 -14.94622 -14.75314 -14.43986 -14.38579 -14.26276 -13.92436 -13.64843 -13.35522 -13.22300 -13.07118 -12.88797 -12.85732 -12.55249 -12.26368 -12.10979 -12.08267 -11.89338 -11.83115 -11.66517 -11.57375 -11.47602 -11.33495 -11.09727 -10.60799 -10.51667 -9.93627 -9.23308 -8.25055 -6.35631 1.40625 1.42845 1.50859 1.68737 2.16648 2.42342 2.89576 3.09475 3.63738 3.85040 3.90374 3.95981 4.04415 4.09392 4.25157 4.32217 4.38353 4.44956 4.47440 4.50899 4.60814 4.68506 4.70432 4.80783 4.83726 4.86828 4.96920 5.00704 5.02896 5.08114 5.10151 5.18036 5.24368 5.28086 5.32558 5.41812 5.48798 5.50653 5.52620 5.56924 5.77684 5.99261 6.15419 6.18862 6.67623 6.77295 7.33432 7.34065 8.86499 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026511 B = 0.003566 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.899403 B = 7850.146514 C = 8390.869237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.074 4.074 3 C -0.133 4.133 4 C 0.077 3.923 5 H 0.071 0.929 6 C 0.515 3.485 7 O -0.566 6.566 8 N -0.719 5.719 9 C 0.145 3.855 10 C 0.026 3.974 11 C -0.549 4.549 12 H 0.057 0.943 13 C 0.009 3.991 14 N -0.925 5.925 15 Si 0.964 3.036 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.269 1.269 19 N -0.523 5.523 20 C 0.050 3.950 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.110 4.110 24 C 0.050 3.950 25 H 0.039 0.961 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.406 0.594 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.009 0.991 36 H 0.006 0.994 37 H 0.266 0.734 38 H 0.039 0.961 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.754 -4.545 -15.240 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.093 4.093 3 C -0.191 4.191 4 C -0.035 4.035 5 H 0.089 0.911 6 C 0.302 3.698 7 O -0.444 6.444 8 N -0.371 5.371 9 C 0.021 3.979 10 C -0.012 4.012 11 C -0.587 4.587 12 H 0.075 0.925 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.788 3.212 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.194 1.194 19 N -0.248 5.248 20 C -0.077 4.077 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.078 4.078 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.127 0.873 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.242 0.758 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.025 0.975 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 17.224 -3.544 -14.828 23.002 hybrid contribution -1.299 -0.619 1.101 1.812 sum 15.925 -4.163 -13.727 21.433 Atomic orbital electron populations 1.22048 0.94343 1.02931 1.02542 1.21120 0.95797 0.96803 0.95582 1.21667 1.01794 0.95185 1.00404 1.21710 0.89662 0.98704 0.93378 0.91126 1.20916 0.80746 0.82734 0.85399 1.90645 1.57845 1.35469 1.60439 1.46281 1.17947 1.38839 1.34072 1.21143 0.95050 0.94657 0.87037 1.19100 0.90360 0.95750 0.95968 1.21434 1.01987 1.19161 1.16122 0.92493 1.25855 0.97200 0.96068 0.99908 1.70049 1.12395 1.31253 1.42780 0.85520 0.77477 0.78979 0.79218 1.19346 1.20466 1.19406 1.61641 1.03873 1.56310 1.03016 1.22319 0.96243 0.96683 0.92437 1.21573 0.93544 1.01606 0.98257 1.21573 1.00285 0.99546 0.94030 1.21504 0.93059 1.01142 0.99100 1.22141 0.97029 0.96056 0.92556 0.94207 0.90572 0.91034 0.87305 0.95845 0.91772 0.91702 0.75800 0.94051 0.93860 0.97226 0.97545 0.92507 0.94261 0.88998 0.91935 0.89333 0.90695 0.91764 0.92529 0.91214 0.93033 0.94980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.43 71.98 0.61 -2.85 16 2 C -0.07 -1.56 2.35 -10.79 -0.03 -1.59 16 3 C -0.13 -3.27 8.77 71.98 0.63 -2.64 16 4 C 0.08 1.94 1.72 44.17 0.08 2.02 16 5 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 6 C 0.52 17.72 4.34 87.65 0.38 18.10 16 7 O -0.57 -23.89 14.42 -3.04 -0.04 -23.94 16 8 N -0.72 -25.63 4.20 -463.06 -1.94 -27.58 16 9 C 0.14 6.39 5.62 86.38 0.49 6.88 16 10 C 0.03 1.31 5.09 29.84 0.15 1.46 16 11 C -0.55 -31.02 9.11 25.60 0.23 -30.79 16 12 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 13 C 0.01 0.49 5.46 84.65 0.46 0.95 16 14 N -0.93 -54.42 13.29 21.45 0.28 -54.13 16 15 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 N -0.52 -12.64 3.51 -875.52 -3.07 -15.71 16 20 C 0.05 0.85 5.21 86.32 0.45 1.30 16 21 C -0.11 -1.66 6.09 30.64 0.19 -1.47 16 22 C -0.12 -1.83 6.00 30.67 0.18 -1.64 16 23 C -0.11 -2.35 6.09 30.65 0.19 -2.17 16 24 C 0.05 1.30 5.09 86.33 0.44 1.74 16 25 H 0.04 1.10 6.28 -2.39 -0.01 1.09 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.11 1.68 6.33 -2.39 -0.02 1.66 16 29 H 0.02 0.73 6.71 -2.39 -0.02 0.72 16 30 H 0.06 1.59 7.67 -2.39 -0.02 1.57 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.41 12.66 8.04 -92.71 -0.75 11.91 16 33 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.09 1.33 6.01 -2.39 -0.01 1.31 16 40 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.05 1.72 5.84 -2.39 -0.01 1.71 16 47 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -66.82 358.83 1.88 -64.94 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.18 Total: 21.19 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 4.45 Total: -10.70 kcal Atomic # 7 Polarization: -92.69 SS G_CDS: -4.73 Total: -97.42 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.94 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -66.82 1.88 -64.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330803752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.655 kcal (2) G-P(sol) polarization free energy of solvation -66.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds