Wall clock time and date at job start Tue Mar 31 2020 06:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47092 * 2 1 4 4 C 1.53000 * 109.47057 * 119.99579 * 2 1 3 5 5 N 1.46493 * 109.47321 * 300.00084 * 4 2 1 6 6 C 1.37343 * 120.00080 * 179.97438 * 5 4 2 7 7 O 1.35094 * 119.99937 * 0.02562 * 6 5 4 8 8 N 1.30101 * 120.00095 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00428 * 185.28768 * 8 6 5 10 10 C 1.53003 * 109.47193 * 115.23182 * 9 8 6 11 11 C 1.50704 * 109.47039 * 180.02562 * 10 9 8 12 12 H 1.07992 * 119.99871 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99729 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99747 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99975 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47256 * 90.00140 * 15 13 11 17 17 H 1.48507 * 109.46929 * 210.00257 * 15 13 11 18 18 H 1.48492 * 109.47116 * 329.99573 * 15 13 11 19 19 C 1.53002 * 109.47235 * 239.99722 * 2 1 3 20 20 C 1.54882 * 110.75668 * 54.30132 * 19 2 1 21 21 C 1.54263 * 104.19997 * 203.74519 * 20 19 2 22 22 C 1.53876 * 106.59776 * 23.60238 * 21 20 19 23 23 C 1.54272 * 106.59576 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.47328 * 297.01301 * 1 2 3 25 25 H 1.09001 * 109.47102 * 57.02443 * 1 2 3 26 26 H 1.09008 * 109.47033 * 177.01736 * 1 2 3 27 27 H 1.09002 * 109.47410 * 184.75894 * 3 2 1 28 28 H 1.08998 * 109.46939 * 304.75813 * 3 2 1 29 29 H 1.09002 * 109.47769 * 64.75609 * 3 2 1 30 30 H 1.09004 * 109.47074 * 180.02562 * 4 2 1 31 31 H 1.09000 * 109.47122 * 60.00174 * 4 2 1 32 32 H 0.96996 * 120.00374 * 0.02562 * 5 4 2 33 33 H 0.96700 * 113.99830 * 84.98150 * 7 6 5 34 34 H 1.09002 * 109.47826 * 235.23935 * 9 8 6 35 35 H 1.09001 * 109.46904 * 355.23732 * 9 8 6 36 36 H 1.09003 * 109.47277 * 300.00262 * 10 9 8 37 37 H 1.09001 * 109.46746 * 60.00453 * 10 9 8 38 38 H 0.97000 * 119.99553 * 179.97438 * 14 13 11 39 39 H 1.09003 * 110.67093 * 177.73643 * 19 2 1 40 40 H 1.09007 * 110.48564 * 322.41949 * 20 19 2 41 41 H 1.08997 * 110.49242 * 85.05949 * 20 19 2 42 42 H 1.09008 * 110.03035 * 264.32752 * 21 20 19 43 43 H 1.08991 * 110.03917 * 142.89145 * 21 20 19 44 44 H 1.08999 * 110.03898 * 240.72086 * 22 21 20 45 45 H 1.09005 * 110.06989 * 119.30838 * 22 21 20 46 46 H 1.09006 * 110.48360 * 217.70780 * 23 22 21 47 47 H 1.09003 * 110.59962 * 95.12475 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.5516 -0.0305 2.4454 6 6 1.8830 -0.5000 3.6928 7 8 2.6597 -1.5984 3.8168 8 7 1.4497 0.1136 4.7551 9 6 1.8961 -0.3160 6.0825 10 6 2.7117 0.8030 6.7333 11 6 3.1714 0.3607 8.0987 12 1 2.9078 -0.6201 8.4657 13 6 3.9275 1.2088 8.8797 14 7 4.3283 0.8230 10.0714 15 14 4.3828 2.9057 8.2451 16 1 3.3338 3.8798 8.6400 17 1 5.6856 3.3184 8.8262 18 1 4.4911 2.8679 6.7646 19 6 2.0400 -0.7213 -1.2492 20 6 1.4262 -0.1024 -2.5295 21 6 1.5088 -1.2345 -3.5741 22 6 1.5687 -2.5554 -2.7871 23 6 1.5198 -2.1798 -1.2915 24 1 -0.3634 0.4667 0.9155 25 1 -0.3633 0.5593 -0.8621 26 1 -0.3633 -1.0264 -0.0535 27 1 3.1266 1.4437 -0.0853 28 1 1.6087 1.9803 -0.8443 29 1 1.7479 1.9312 0.9295 30 1 3.1300 -0.7208 1.2495 31 1 1.6766 -1.7488 1.2494 32 1 0.9937 0.7579 2.3564 33 1 3.6084 -1.4158 3.7763 34 1 1.0283 -0.5410 6.7026 35 1 2.5151 -1.2081 5.9866 36 1 3.5795 1.0279 6.1133 37 1 2.0927 1.6950 6.8293 38 1 4.8606 1.4196 10.6207 39 1 3.1290 -0.6980 -1.2893 40 1 0.3882 0.1816 -2.3560 41 1 2.0092 0.7594 -2.8540 42 1 2.4082 -1.1193 -4.1792 43 1 0.6249 -1.2195 -4.2117 44 1 2.4971 -3.0812 -3.0101 45 1 0.7142 -3.1821 -3.0424 46 1 2.1717 -2.8339 -0.7124 47 1 0.4978 -2.2319 -0.9163 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330854065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:50 Heat of formation + Delta-G solvation = -46.507588 kcal Electronic energy + Delta-G solvation = -22566.508965 eV Core-core repulsion = 19362.658130 eV Total energy + Delta-G solvation = -3203.850835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11951 -38.72959 -36.16298 -34.35838 -33.36618 -32.26845 -29.75568 -29.22573 -27.97979 -27.58008 -26.32166 -24.26578 -21.70732 -21.13784 -20.51879 -20.08815 -18.57980 -17.90925 -16.94861 -16.23042 -15.86688 -15.69813 -15.31456 -14.78973 -14.42209 -14.15409 -13.96138 -13.90365 -13.38950 -13.09873 -12.93780 -12.69132 -12.30302 -12.06339 -11.79143 -11.73205 -11.66511 -11.54644 -11.40077 -11.29570 -10.99404 -10.84040 -10.70344 -10.61822 -10.57592 -10.47160 -10.17328 -9.88492 -9.74223 -9.20447 -8.73893 -8.48441 -7.59992 -6.00601 -3.98347 2.75545 3.27764 3.35031 3.41234 3.47110 4.13342 4.22883 4.31391 4.49554 4.58773 4.60934 4.68236 4.80417 5.07733 5.12885 5.15411 5.23857 5.32151 5.33845 5.36792 5.40403 5.44119 5.53899 5.55099 5.62554 5.66785 5.72787 5.75679 5.78482 5.88175 5.89607 6.00314 6.04198 6.10555 6.23072 6.38844 6.61657 6.88189 6.90626 7.33219 7.45511 7.65162 7.81192 7.91650 8.58022 8.85057 9.04375 9.62166 11.12754 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033756 B = 0.002872 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.280995 B = 9747.635382 C =10077.723767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.065 4.065 3 C -0.144 4.144 4 C 0.139 3.861 5 N -0.725 5.725 6 C 0.529 3.471 7 O -0.530 6.530 8 N -0.592 5.592 9 C 0.078 3.922 10 C -0.003 4.003 11 C -0.519 4.519 12 H 0.072 0.928 13 C 0.066 3.934 14 N -0.904 5.904 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.267 1.267 19 C -0.078 4.078 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.125 4.125 23 C -0.127 4.127 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.412 0.588 33 H 0.396 0.604 34 H 0.069 0.931 35 H 0.042 0.958 36 H 0.008 0.992 37 H 0.018 0.982 38 H 0.263 0.737 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.008 -3.274 -30.284 30.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.065 4.065 3 C -0.201 4.201 4 C 0.014 3.986 5 N -0.379 5.379 6 C 0.214 3.786 7 O -0.332 6.332 8 N -0.333 5.333 9 C -0.051 4.051 10 C -0.041 4.041 11 C -0.557 4.557 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.543 5.543 15 Si 0.710 3.290 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.192 1.192 19 C -0.097 4.097 20 C -0.160 4.160 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.164 4.164 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.251 0.749 33 H 0.253 0.747 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.036 0.964 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.765 -3.136 -29.802 30.517 hybrid contribution 1.175 0.692 -0.211 1.380 sum -4.590 -2.444 -30.014 30.461 Atomic orbital electron populations 1.22046 0.94120 1.02401 1.01998 1.20678 0.96283 0.95793 0.93768 1.21899 1.01197 0.94921 1.02122 1.21269 0.98081 0.95932 0.83284 1.44317 1.58974 1.33197 1.01364 1.20401 0.89002 0.82469 0.86766 1.84782 1.21826 1.32631 1.93935 1.72434 1.31658 1.29542 0.99631 1.21805 0.98671 0.98347 0.86308 1.19537 0.94272 0.94534 0.95716 1.21110 1.32605 1.03112 0.98911 0.90974 1.25001 0.95471 0.98324 0.94652 1.69923 1.37537 1.36865 1.10012 0.86737 0.77794 0.84882 0.79601 1.20213 1.21495 1.19186 1.22101 0.99899 0.94496 0.93221 1.22514 1.01481 0.97602 0.94368 1.22128 1.01489 0.94776 0.97901 1.22122 1.01600 0.97274 0.95267 1.22575 1.01869 0.95895 0.96103 0.92271 0.92054 0.91981 0.92465 0.92340 0.92159 0.92652 0.91852 0.74916 0.74679 0.91305 0.93973 0.97326 0.96411 0.92772 0.90426 0.90845 0.91812 0.92113 0.92101 0.92049 0.92070 0.91586 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 7.67 37.16 0.28 -0.80 16 2 C -0.06 -0.47 0.35 -154.51 -0.05 -0.53 16 3 C -0.14 -1.08 8.13 37.16 0.30 -0.78 16 4 C 0.14 1.30 4.42 -4.05 -0.02 1.28 16 5 N -0.72 -8.91 5.00 -62.53 -0.31 -9.22 16 6 C 0.53 8.66 8.58 -88.56 -0.76 7.90 16 7 O -0.53 -8.03 11.29 -16.98 -0.19 -8.22 16 8 N -0.59 -11.94 10.61 -62.52 -0.66 -12.60 16 9 C 0.08 1.77 6.28 -4.04 -0.03 1.75 16 10 C 0.00 -0.07 4.37 -27.88 -0.12 -0.19 16 11 C -0.52 -15.45 9.66 -34.44 -0.33 -15.78 16 12 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -28.55 13.96 55.43 0.77 -27.78 16 15 Si 0.88 22.61 27.47 -169.99 -4.67 17.94 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 19 C -0.08 -0.51 2.26 -88.62 -0.20 -0.71 16 20 C -0.12 -0.73 5.36 -25.08 -0.13 -0.86 16 21 C -0.13 -0.72 6.80 -25.61 -0.17 -0.90 16 22 C -0.12 -0.76 6.80 -25.61 -0.17 -0.93 16 23 C -0.13 -0.84 5.12 -25.06 -0.13 -0.97 16 24 H 0.06 0.49 6.78 -51.93 -0.35 0.14 16 25 H 0.06 0.39 6.18 -51.93 -0.32 0.07 16 26 H 0.06 0.46 6.00 -51.92 -0.31 0.15 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.39 7.61 -51.93 -0.40 -0.01 16 29 H 0.06 0.51 6.74 -51.93 -0.35 0.16 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.62 7.21 -51.93 -0.37 0.25 16 32 H 0.41 4.90 6.26 -40.82 -0.26 4.65 16 33 H 0.40 4.57 9.06 45.56 0.41 4.98 16 34 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.04 0.94 6.74 -51.93 -0.35 0.59 16 36 H 0.01 0.22 7.20 -51.93 -0.37 -0.15 16 37 H 0.02 0.47 7.57 -51.93 -0.39 0.07 16 38 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.44 5.67 -51.93 -0.29 0.14 16 41 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 42 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.45 8.00 -51.93 -0.42 0.04 16 47 H 0.07 0.51 5.79 -51.93 -0.30 0.21 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -33.45 356.72 -8.79 -42.24 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -7.46 Total: 1.87 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -1.63 Total: -9.61 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -0.20 Total: -49.59 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.19 Total: -8.22 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.94 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.45 -8.79 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330854065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.270 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds