Wall clock time and date at job start Tue Mar 31 2020 05:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 C 1.53002 * 109.47186 * 119.99683 * 2 1 3 5 5 C 1.53005 * 109.46890 * 65.12148 * 4 2 1 6 6 H 1.08997 * 109.49784 * 305.75940 * 5 4 2 7 7 C 1.53040 * 109.49874 * 185.69227 * 5 4 2 8 8 C 1.53043 * 109.53731 * 178.68496 * 7 5 4 9 9 C 1.53187 * 109.30955 * 61.36990 * 8 7 5 10 10 N 1.46927 * 108.89468 * 305.28946 * 9 8 7 11 11 C 1.37340 * 120.63198 * 233.68677 * 10 9 8 12 12 O 1.35093 * 120.00335 * 179.97438 * 11 10 9 13 13 N 1.30098 * 120.00068 * 359.97438 * 11 10 9 14 14 C 1.46500 * 120.00102 * 185.24674 * 13 11 10 15 15 C 1.53003 * 109.47019 * 115.71793 * 14 13 11 16 16 C 1.50697 * 109.47352 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99790 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00468 * 180.02562 * 16 15 14 19 19 N 1.31507 * 120.00005 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99507 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46908 * 90.00364 * 20 18 16 22 22 H 1.48504 * 109.46867 * 210.00133 * 20 18 16 23 23 H 1.48498 * 109.47171 * 330.00435 * 20 18 16 24 24 C 1.47200 * 118.55356 * 53.54004 * 10 9 8 25 25 H 1.09004 * 109.46970 * 300.00384 * 1 2 3 26 26 H 1.09000 * 109.47091 * 59.99590 * 1 2 3 27 27 H 1.09005 * 109.47530 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46967 * 240.00083 * 2 1 3 29 29 H 1.09004 * 109.47126 * 184.90056 * 3 2 1 30 30 H 1.09001 * 109.46982 * 304.89720 * 3 2 1 31 31 H 1.08999 * 109.47426 * 64.90057 * 3 2 1 32 32 H 1.09000 * 109.47457 * 305.12889 * 4 2 1 33 33 H 1.09000 * 109.47150 * 185.11997 * 4 2 1 34 34 H 1.09002 * 109.45989 * 58.66610 * 7 5 4 35 35 H 1.09000 * 109.45839 * 298.71040 * 7 5 4 36 36 H 1.08994 * 109.49684 * 301.41134 * 8 7 5 37 37 H 1.09002 * 109.51748 * 181.33195 * 8 7 5 38 38 H 1.08992 * 109.59158 * 65.15266 * 9 8 7 39 39 H 1.09008 * 109.58242 * 185.43250 * 9 8 7 40 40 H 0.96698 * 114.00103 * 84.99377 * 12 11 10 41 41 H 1.09000 * 109.47335 * 235.71305 * 14 13 11 42 42 H 1.08999 * 109.47478 * 355.72009 * 14 13 11 43 43 H 1.08997 * 109.47169 * 299.99990 * 15 14 13 44 44 H 1.09006 * 109.47147 * 60.00059 * 15 14 13 45 45 H 0.97001 * 119.99268 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.53216 * 186.67262 * 24 10 9 47 47 H 1.09006 * 109.67542 * 66.37158 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6378 -2.1961 1.1866 6 1 0.5610 -2.2735 1.0367 7 6 2.0221 -2.8865 2.4972 8 6 1.5907 -4.3541 2.4483 9 6 2.3192 -5.0581 1.2993 10 7 2.0721 -4.3177 0.0545 11 6 1.5742 -4.9582 -1.0536 12 8 1.3513 -4.2649 -2.1914 13 7 1.3171 -6.2327 -1.0076 14 6 0.8956 -6.9391 -2.2199 15 6 1.9521 -7.9795 -2.5972 16 6 1.5183 -8.7067 -3.8438 17 1 0.5828 -8.4520 -4.3197 18 6 2.3156 -9.6972 -4.3770 19 7 1.9373 -10.3314 -5.4651 20 14 3.9340 -10.1373 -3.5543 21 1 3.7041 -11.2072 -2.5505 22 1 4.8954 -10.6182 -4.5789 23 1 4.4889 -8.9365 -2.8795 24 6 2.3668 -2.8758 0.0233 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1264 1.4438 -0.0878 30 1 1.6067 1.9810 -0.8429 31 1 1.7501 1.9304 0.9306 32 1 1.6036 -0.2631 2.1369 33 1 3.1261 -0.6424 1.2963 34 1 1.5238 -2.3891 3.3294 35 1 3.1019 -2.8297 2.6345 36 1 0.5144 -4.4116 2.2863 37 1 1.8432 -4.8395 3.3910 38 1 3.3894 -5.0810 1.5046 39 1 1.9446 -6.0769 1.1990 40 1 2.1313 -4.1737 -2.7556 41 1 -0.0564 -7.4378 -2.0375 42 1 0.7814 -6.2251 -3.0355 43 1 2.9041 -7.4810 -2.7796 44 1 2.0663 -8.6937 -1.7816 45 1 2.4984 -11.0280 -5.8403 46 1 2.0219 -2.4538 -0.9207 47 1 3.4408 -2.7185 0.1232 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330864563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:58 Heat of formation + Delta-G solvation = -46.479703 kcal Electronic energy + Delta-G solvation = -22872.805673 eV Core-core repulsion = 19668.956047 eV Total energy + Delta-G solvation = -3203.849626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.83032 -38.16631 -36.25886 -34.38790 -33.19053 -32.22967 -31.40446 -29.64932 -27.44037 -26.51377 -25.73519 -23.80255 -22.76998 -21.00403 -20.26587 -19.77702 -19.54809 -17.81670 -16.84675 -15.88284 -15.85137 -15.18963 -14.87701 -14.68819 -14.31149 -14.21989 -13.96353 -13.54536 -13.30004 -13.15539 -13.02559 -12.68950 -12.56341 -12.21049 -12.01783 -11.78070 -11.60986 -11.55031 -11.37974 -11.16912 -11.03456 -10.89629 -10.74842 -10.56337 -10.46290 -10.32241 -10.12555 -9.74709 -9.68349 -9.19788 -8.69651 -8.48542 -7.45999 -6.00923 -3.98650 2.70134 3.02442 3.34769 3.41030 3.46925 4.30883 4.47777 4.49318 4.53568 4.66609 4.77013 4.82442 4.92007 5.02959 5.17799 5.28533 5.31190 5.33621 5.35310 5.43102 5.47335 5.51078 5.59593 5.64146 5.65524 5.71370 5.72050 5.86928 5.88617 5.94461 5.96153 6.09197 6.12945 6.15908 6.29231 6.43705 6.61263 6.87193 6.93013 7.26964 7.44464 7.50865 7.82083 7.89809 8.57634 8.82061 9.04082 9.61914 11.12483 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024810 B = 0.003387 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.287831 B = 8265.211109 C = 8784.627075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.147 4.147 4 C -0.106 4.106 5 C -0.105 4.105 6 H 0.078 0.922 7 C -0.113 4.113 8 C -0.136 4.136 9 C 0.134 3.866 10 N -0.610 5.610 11 C 0.531 3.469 12 O -0.528 6.528 13 N -0.589 5.589 14 C 0.078 3.922 15 C -0.002 4.002 16 C -0.519 4.519 17 H 0.072 0.928 18 C 0.067 3.933 19 N -0.904 5.904 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.267 1.267 24 C 0.128 3.872 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.101 0.899 40 H 0.396 0.604 41 H 0.068 0.932 42 H 0.041 0.959 43 H 0.008 0.992 44 H 0.017 0.983 45 H 0.263 0.737 46 H 0.083 0.917 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 23.121 16.297 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.205 4.205 4 C -0.144 4.144 5 C -0.124 4.124 6 H 0.096 0.904 7 C -0.150 4.150 8 C -0.175 4.175 9 C 0.012 3.988 10 N -0.341 5.341 11 C 0.217 3.783 12 O -0.330 6.330 13 N -0.330 5.330 14 C -0.051 4.051 15 C -0.040 4.040 16 C -0.558 4.558 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.544 5.544 20 Si 0.710 3.290 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.192 1.192 24 C 0.004 3.996 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.253 0.747 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.664 22.388 16.813 28.047 hybrid contribution 1.203 0.153 -0.645 1.374 sum 2.868 22.540 16.167 27.887 Atomic orbital electron populations 1.21891 0.95231 1.02078 1.01450 1.21174 0.96067 0.96014 0.98644 1.21843 1.00829 0.96149 1.01633 1.21655 1.00840 0.94079 0.97873 1.21620 1.01247 0.94201 0.95353 0.90357 1.21561 1.01092 0.95556 0.96833 1.21960 1.01208 0.95660 0.98654 1.21447 0.98776 0.97082 0.81539 1.46387 1.69247 1.07758 1.10701 1.20297 0.91649 0.85977 0.80348 1.84794 1.39620 1.77426 1.31144 1.72393 1.25200 1.03141 1.32221 1.21805 0.99372 0.95772 0.88160 1.19524 0.93940 0.93981 0.96520 1.21113 1.07587 1.18296 1.08773 0.91000 1.24997 0.97968 0.95728 0.94719 1.69918 1.38337 1.24767 1.21333 0.86741 0.83947 0.79122 0.79238 1.20202 1.21485 1.19180 1.21599 0.98720 0.79901 0.99339 0.92949 0.92871 0.92240 0.90932 0.92807 0.92770 0.92871 0.91744 0.91852 0.92069 0.91982 0.91579 0.91009 0.92554 0.88024 0.74686 0.91358 0.94048 0.97356 0.96442 0.92765 0.89860 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.96 37.16 0.33 -0.81 16 2 C -0.10 -0.72 2.80 -90.62 -0.25 -0.97 16 3 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 4 C -0.11 -0.73 4.14 -26.73 -0.11 -0.84 16 5 C -0.10 -0.89 2.21 -90.50 -0.20 -1.09 16 6 H 0.08 0.78 6.32 -51.93 -0.33 0.46 16 7 C -0.11 -0.91 5.17 -26.69 -0.14 -1.05 16 8 C -0.14 -1.31 6.08 -26.61 -0.16 -1.48 16 9 C 0.13 1.63 6.44 -3.71 -0.02 1.61 16 10 N -0.61 -8.06 3.06 -175.14 -0.54 -8.60 16 11 C 0.53 8.86 8.36 -88.57 -0.74 8.12 16 12 O -0.53 -8.03 10.68 -16.98 -0.18 -8.21 16 13 N -0.59 -11.81 9.12 -62.52 -0.57 -12.38 16 14 C 0.08 1.77 6.28 -4.04 -0.03 1.74 16 15 C 0.00 -0.04 4.37 -27.88 -0.12 -0.16 16 16 C -0.52 -15.43 9.66 -34.44 -0.33 -15.76 16 17 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.90 -28.54 13.96 55.43 0.77 -27.77 16 20 Si 0.88 22.56 27.47 -169.99 -4.67 17.89 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 24 C 0.13 1.28 5.40 -3.56 -0.02 1.26 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 6.45 -51.93 -0.33 0.19 16 28 H 0.07 0.56 6.50 -51.93 -0.34 0.22 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 1.49 6.91 -51.92 -0.36 1.13 16 40 H 0.40 4.57 9.06 45.56 0.41 4.98 16 41 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 42 H 0.04 0.93 6.73 -51.93 -0.35 0.58 16 43 H 0.01 0.21 7.20 -51.93 -0.37 -0.16 16 44 H 0.02 0.46 7.57 -51.93 -0.39 0.06 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 46 H 0.08 0.83 5.62 -51.93 -0.29 0.54 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -33.35 362.22 -9.13 -42.49 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -7.86 Total: -0.77 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.55 Total: -8.11 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.33 Total: -48.74 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -0.18 Total: -8.21 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.67 Total: 17.89 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.35 -9.13 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330864563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.994 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds