Wall clock time and date at job start Tue Mar 31 2020 05:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 N 1.46892 * 109.47495 * 179.97438 * 5 4 2 7 7 C 1.46852 * 110.99817 * 294.21363 * 6 5 4 8 8 C 1.53043 * 109.52026 * 174.15932 * 7 6 5 9 9 C 1.53115 * 109.28020 * 59.17820 * 8 7 6 10 10 C 1.53000 * 109.57477 * 182.40963 * 9 8 7 11 11 N 1.46496 * 109.46885 * 294.70846 * 10 9 8 12 12 C 1.34775 * 119.99859 * 179.97438 * 11 10 9 13 13 O 1.21687 * 120.00085 * 0.02562 * 12 11 10 14 14 C 1.46379 * 119.99822 * 180.02562 * 12 11 10 15 15 H 1.07991 * 120.00562 * 0.02562 * 14 12 11 16 16 C 1.40051 * 119.99538 * 180.02562 * 14 12 11 17 17 N 1.30675 * 120.00435 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99857 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47081 * 59.99857 * 18 16 14 20 20 H 1.48495 * 109.47085 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46921 * 300.00278 * 18 16 14 22 22 C 1.53120 * 109.15995 * 302.34203 * 9 8 7 23 23 C 1.46845 * 111.00255 * 170.00206 * 6 5 4 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 32 32 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 33 33 H 1.08997 * 109.47151 * 300.00410 * 5 4 2 34 34 H 1.09006 * 109.46918 * 59.99351 * 5 4 2 35 35 H 1.09004 * 109.46034 * 294.16866 * 7 6 5 36 36 H 1.08996 * 109.46305 * 54.14398 * 7 6 5 37 37 H 1.09002 * 109.50520 * 299.23422 * 8 7 6 38 38 H 1.08999 * 109.49995 * 179.11563 * 8 7 6 39 39 H 1.08998 * 109.52597 * 62.24883 * 9 8 7 40 40 H 1.09001 * 109.47105 * 54.71525 * 10 9 8 41 41 H 1.09009 * 109.47097 * 174.71382 * 10 9 8 42 42 H 0.97004 * 120.00373 * 0.02562 * 11 10 9 43 43 H 0.97000 * 119.99874 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.50864 * 297.71631 * 22 9 8 45 45 H 1.09002 * 109.50527 * 177.59089 * 22 9 8 46 46 H 1.09004 * 109.45908 * 305.85182 * 23 6 5 47 47 H 1.08997 * 109.46329 * 65.83461 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.8309 -1.1881 6 7 4.0545 -1.5239 -2.3872 7 6 3.5991 -2.9198 -2.4112 8 6 4.0028 -3.5667 -3.7381 9 6 5.5253 -3.5043 -3.8883 10 6 5.9316 -4.0953 -5.2398 11 7 5.6050 -5.5231 -5.2664 12 6 5.8751 -6.2558 -6.3649 13 8 6.3907 -5.7314 -7.3344 14 6 5.5482 -7.6824 -6.3917 15 1 5.0902 -8.1477 -5.5315 16 6 5.8293 -8.4438 -7.5330 17 7 6.3839 -7.8809 -8.5738 18 14 5.4128 -10.2645 -7.5671 19 1 3.9520 -10.4419 -7.3684 20 1 5.8078 -10.8382 -8.8786 21 1 6.1482 -10.9608 -6.4810 22 6 5.9784 -2.0437 -3.8116 23 6 5.5175 -1.4409 -2.4825 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1370 33 1 3.9994 0.1676 -1.1421 34 1 3.8533 -1.3938 -0.3003 35 1 4.0577 -3.4656 -1.5866 36 1 2.5144 -2.9498 -2.3077 37 1 3.5334 -3.0298 -4.5624 38 1 3.6784 -4.6073 -3.7491 39 1 5.9942 -4.0738 -3.0860 40 1 5.3919 -3.5840 -6.0370 41 1 7.0041 -3.9651 -5.3856 42 1 5.1936 -5.9411 -4.4938 43 1 6.5790 -8.4084 -9.3641 44 1 5.5401 -1.4828 -4.6370 45 1 7.0655 -1.9961 -3.8751 46 1 5.8261 -0.3967 -2.4309 47 1 5.9671 -1.9938 -1.6578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330879488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:19 Heat of formation + Delta-G solvation = -71.783610 kcal Electronic energy + Delta-G solvation = -22325.064223 eV Core-core repulsion = 19120.117337 eV Total energy + Delta-G solvation = -3204.946886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.41696 -37.45996 -36.66089 -34.50933 -32.54692 -31.77067 -30.77699 -29.15454 -27.47110 -26.85946 -25.28827 -23.39115 -22.62398 -21.27396 -20.14570 -19.62701 -19.44751 -17.17674 -16.02563 -15.77178 -15.25238 -14.90682 -14.83874 -14.51052 -14.30901 -14.04252 -13.82847 -13.69473 -13.25668 -12.91310 -12.71470 -12.51599 -12.39866 -12.16768 -11.99495 -11.82739 -11.59685 -11.30336 -11.15113 -11.12606 -10.91970 -10.90336 -10.87216 -10.68820 -10.44350 -10.34713 -10.30135 -10.09795 -9.96155 -8.80585 -8.37065 -7.55818 -7.41116 -6.13891 -4.59373 3.18086 3.22694 3.24723 3.77294 4.13921 4.54502 4.58626 4.64122 4.68523 4.77644 4.88749 4.93017 5.09769 5.10884 5.26225 5.30795 5.34751 5.39093 5.41096 5.48352 5.50617 5.55020 5.60922 5.66026 5.73705 5.75459 5.83136 5.84780 5.85479 5.92712 6.01050 6.07317 6.10390 6.16259 6.21220 6.35793 6.44773 6.62984 6.76225 7.06252 7.06896 7.47152 7.99085 8.17712 8.38228 9.06718 9.60854 10.65477 10.84771 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.002707 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.628004 B =10339.811106 C =10976.436239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.112 4.112 5 C 0.055 3.945 6 N -0.538 5.538 7 C 0.055 3.945 8 C -0.109 4.109 9 C -0.098 4.098 10 C 0.140 3.860 11 N -0.767 5.767 12 C 0.555 3.445 13 O -0.582 6.582 14 C -0.547 4.547 15 H 0.066 0.934 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.109 4.109 23 C 0.059 3.941 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.029 0.971 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.378 0.622 43 H 0.268 0.732 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 14.635 17.925 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.073 4.073 6 N -0.263 5.263 7 C -0.073 4.073 8 C -0.147 4.147 9 C -0.116 4.116 10 C 0.015 3.985 11 N -0.423 5.423 12 C 0.358 3.642 13 O -0.465 6.465 14 C -0.584 4.584 15 H 0.084 0.916 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.147 4.147 23 C -0.069 4.069 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.210 0.790 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.834 15.252 16.583 23.854 hybrid contribution -0.035 -1.522 1.122 1.891 sum -7.869 13.730 17.705 23.746 Atomic orbital electron populations 1.21828 0.95178 1.01736 1.01677 1.21102 0.95765 0.96393 0.98323 1.21890 1.01085 0.95971 1.01627 1.21676 0.94639 1.00789 0.97916 1.22155 0.95757 0.98700 0.90689 1.61933 1.10827 1.14919 1.38632 1.22171 1.00161 0.87496 0.97464 1.21623 0.95579 1.00614 0.96898 1.21421 0.95955 0.95871 0.98401 1.20874 0.99067 0.84138 0.94440 1.46127 1.69339 1.07705 1.19105 1.18196 0.78311 0.87128 0.80551 1.90594 1.47565 1.73280 1.35093 1.20855 1.43532 0.92685 1.01314 0.91590 1.25708 0.93037 0.99658 0.94823 1.70017 1.30536 1.36305 1.02942 0.86450 0.79503 0.82953 0.77903 1.19314 1.20592 1.19344 1.21567 1.00401 0.95474 0.97262 1.22061 0.87081 1.00390 0.97318 0.92721 0.92877 0.92593 0.91525 0.92562 0.93019 0.92562 0.91836 0.91014 0.90811 0.95325 0.95225 0.90724 0.90995 0.91085 0.91502 0.93393 0.93624 0.79041 0.92116 0.90833 0.91384 0.91057 0.95184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.19 37.16 0.34 -0.63 16 2 C -0.10 -0.69 2.92 -90.62 -0.26 -0.95 16 3 C -0.15 -0.98 8.95 37.16 0.33 -0.65 16 4 C -0.11 -0.94 4.61 -26.73 -0.12 -1.07 16 5 C 0.05 0.50 4.71 -3.83 -0.02 0.48 16 6 N -0.54 -6.00 4.66 -234.67 -1.09 -7.09 16 7 C 0.05 0.63 5.29 -3.83 -0.02 0.61 16 8 C -0.11 -1.49 5.23 -26.65 -0.14 -1.63 16 9 C -0.10 -1.42 2.29 -90.50 -0.21 -1.62 16 10 C 0.14 2.74 5.07 -4.04 -0.02 2.72 16 11 N -0.77 -17.45 5.31 -61.72 -0.33 -17.78 16 12 C 0.55 16.14 7.75 -12.99 -0.10 16.04 16 13 O -0.58 -19.36 15.02 5.20 0.08 -19.28 16 14 C -0.55 -15.72 9.54 -35.63 -0.34 -16.06 16 15 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 16 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 17 N -0.77 -23.51 11.83 55.55 0.66 -22.85 16 18 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 C -0.11 -1.36 5.38 -26.65 -0.14 -1.51 16 23 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 31 H 0.06 0.56 6.43 -51.92 -0.33 0.23 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.64 6.41 -51.93 -0.33 0.30 16 34 H 0.03 0.27 8.12 -51.93 -0.42 -0.16 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.81 6.21 -51.93 -0.32 0.48 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.00 7.27 -51.93 -0.38 0.62 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.38 7.56 7.67 -40.82 -0.31 7.25 16 43 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 47 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 364.55 15.07 5.49 5.49 Total: -1.00 -33.85 364.55 -9.78 -43.63 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -8.75 Total: 3.73 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.82 Total: -1.24 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.76 Total: -47.72 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.08 Total: -19.28 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.85 -9.78 -43.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330879488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.152 kcal (2) G-P(sol) polarization free energy of solvation -33.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds