Wall clock time and date at job start Tue Mar 31 2020 05:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.53002 * 109.47233 * 240.00343 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 N 1.46892 * 109.47495 * 179.97438 * 5 4 2 7 7 C 1.46852 * 110.99817 * 294.21363 * 6 5 4 8 8 C 1.53043 * 109.52026 * 174.15932 * 7 6 5 9 9 C 1.53115 * 109.28020 * 59.17820 * 8 7 6 10 10 C 1.53000 * 109.57477 * 182.40963 * 9 8 7 11 11 N 1.46496 * 109.46885 * 294.70846 * 10 9 8 12 12 C 1.34775 * 119.99859 * 179.97438 * 11 10 9 13 13 O 1.21687 * 120.00085 * 0.02562 * 12 11 10 14 14 C 1.46379 * 119.99822 * 180.02562 * 12 11 10 15 15 H 1.07991 * 120.00562 * 0.02562 * 14 12 11 16 16 C 1.40051 * 119.99538 * 180.02562 * 14 12 11 17 17 N 1.30675 * 120.00435 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99857 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47081 * 59.99857 * 18 16 14 20 20 H 1.48495 * 109.47085 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46921 * 300.00278 * 18 16 14 22 22 C 1.53120 * 109.15995 * 302.34203 * 9 8 7 23 23 C 1.46845 * 111.00255 * 170.00206 * 6 5 4 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 32 32 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 33 33 H 1.08997 * 109.47151 * 300.00410 * 5 4 2 34 34 H 1.09006 * 109.46918 * 59.99351 * 5 4 2 35 35 H 1.09004 * 109.46034 * 294.16866 * 7 6 5 36 36 H 1.08996 * 109.46305 * 54.14398 * 7 6 5 37 37 H 1.09002 * 109.50520 * 299.23422 * 8 7 6 38 38 H 1.08999 * 109.49995 * 179.11563 * 8 7 6 39 39 H 1.08998 * 109.52597 * 62.24883 * 9 8 7 40 40 H 1.09001 * 109.47105 * 54.71525 * 10 9 8 41 41 H 1.09009 * 109.47097 * 174.71382 * 10 9 8 42 42 H 0.97004 * 120.00373 * 0.02562 * 11 10 9 43 43 H 0.97000 * 119.99874 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.50864 * 297.71631 * 22 9 8 45 45 H 1.09002 * 109.50527 * 177.59089 * 22 9 8 46 46 H 1.09004 * 109.45908 * 305.85182 * 23 6 5 47 47 H 1.08997 * 109.46329 * 65.83461 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.8309 -1.1881 6 7 4.0545 -1.5239 -2.3872 7 6 3.5991 -2.9198 -2.4112 8 6 4.0028 -3.5667 -3.7381 9 6 5.5253 -3.5043 -3.8883 10 6 5.9316 -4.0953 -5.2398 11 7 5.6050 -5.5231 -5.2664 12 6 5.8751 -6.2558 -6.3649 13 8 6.3907 -5.7314 -7.3344 14 6 5.5482 -7.6824 -6.3917 15 1 5.0902 -8.1477 -5.5315 16 6 5.8293 -8.4438 -7.5330 17 7 6.3839 -7.8809 -8.5738 18 14 5.4128 -10.2645 -7.5671 19 1 3.9520 -10.4419 -7.3684 20 1 5.8078 -10.8382 -8.8786 21 1 6.1482 -10.9608 -6.4810 22 6 5.9784 -2.0437 -3.8116 23 6 5.5175 -1.4409 -2.4825 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6054 -1.7198 -1.2952 32 1 1.7516 -0.1583 -2.1370 33 1 3.9994 0.1676 -1.1421 34 1 3.8533 -1.3938 -0.3003 35 1 4.0577 -3.4656 -1.5866 36 1 2.5144 -2.9498 -2.3077 37 1 3.5334 -3.0298 -4.5624 38 1 3.6784 -4.6073 -3.7491 39 1 5.9942 -4.0738 -3.0860 40 1 5.3919 -3.5840 -6.0370 41 1 7.0041 -3.9651 -5.3856 42 1 5.1936 -5.9411 -4.4938 43 1 6.5790 -8.4084 -9.3641 44 1 5.5401 -1.4828 -4.6370 45 1 7.0655 -1.9961 -3.8751 46 1 5.8261 -0.3967 -2.4309 47 1 5.9671 -1.9938 -1.6578 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330879488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:18 Heat of formation + Delta-G solvation = -94.672548 kcal Electronic energy + Delta-G solvation = -22326.056762 eV Core-core repulsion = 19120.117337 eV Total energy + Delta-G solvation = -3205.939425 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.47589 -39.25205 -37.66661 -35.87841 -34.61460 -33.44571 -31.80325 -30.21070 -28.65008 -27.97992 -26.80445 -24.41657 -23.69844 -22.33202 -21.58132 -20.79438 -20.61527 -19.18431 -17.47610 -16.90942 -16.51751 -16.34496 -15.90917 -15.77934 -15.57248 -15.41903 -14.76040 -14.72457 -14.36383 -14.31392 -14.13704 -13.67139 -13.33558 -13.18593 -13.07045 -13.02047 -12.85603 -12.66228 -12.61530 -12.57680 -12.17084 -12.13188 -12.06527 -11.66030 -11.53499 -11.51245 -11.44103 -11.25638 -11.00522 -10.91457 -9.87341 -9.46426 -9.21622 -8.28713 -6.85598 1.39959 1.43905 1.55620 2.25166 2.47559 2.94517 3.14304 3.61367 3.76856 3.81289 3.85955 4.01921 4.05447 4.13953 4.29407 4.37891 4.39980 4.44147 4.59161 4.61772 4.64304 4.71140 4.79182 4.81053 4.86414 4.89785 4.92788 4.96390 5.01113 5.08007 5.09298 5.17336 5.19319 5.22493 5.28414 5.31629 5.37547 5.48045 5.50383 5.57094 5.87860 6.18676 6.22967 6.24801 6.29260 6.86564 7.56438 8.49930 8.67957 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.002707 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.628004 B =10339.811106 C =10976.436239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.108 4.108 5 C 0.058 3.942 6 N -0.551 5.551 7 C 0.062 3.938 8 C -0.106 4.106 9 C -0.083 4.083 10 C 0.143 3.857 11 N -0.753 5.753 12 C 0.535 3.465 13 O -0.636 6.636 14 C -0.574 4.574 15 H 0.088 0.912 16 C 0.026 3.974 17 N -0.823 5.823 18 Si 1.000 3.000 19 H -0.254 1.254 20 H -0.275 1.275 21 H -0.254 1.254 22 C -0.106 4.106 23 C 0.064 3.936 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.036 0.964 36 H 0.083 0.917 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.026 0.974 41 H 0.029 0.971 42 H 0.394 0.606 43 H 0.274 0.726 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.030 14.028 20.256 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.146 4.146 5 C -0.070 4.070 6 N -0.276 5.276 7 C -0.065 4.065 8 C -0.144 4.144 9 C -0.102 4.102 10 C 0.018 3.982 11 N -0.407 5.407 12 C 0.340 3.660 13 O -0.524 6.524 14 C -0.611 4.611 15 H 0.106 0.894 16 C -0.189 4.189 17 N -0.453 5.453 18 Si 0.819 3.181 19 H -0.177 1.177 20 H -0.199 1.199 21 H -0.178 1.178 22 C -0.144 4.144 23 C -0.064 4.064 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.228 0.772 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.106 0.894 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.775 14.674 18.985 25.549 hybrid contribution 0.252 -1.252 0.400 1.339 sum -8.523 13.422 19.385 25.071 Atomic orbital electron populations 1.21827 0.94913 1.01742 1.01926 1.21078 0.95979 0.96567 0.97660 1.21879 1.01166 0.95602 1.01814 1.21627 0.94231 1.00524 0.98177 1.22184 0.96068 0.98854 0.89863 1.61925 1.10990 1.14637 1.40003 1.22063 1.00769 0.87787 0.95917 1.21563 0.94537 1.00386 0.97912 1.21313 0.96795 0.97026 0.95098 1.20962 0.97764 0.82354 0.97089 1.45802 1.68088 1.08786 1.18042 1.18649 0.78048 0.88175 0.81174 1.90546 1.50026 1.74389 1.37398 1.21413 1.43993 0.93000 1.02663 0.89380 1.27026 0.92035 1.06019 0.93791 1.70196 1.31849 1.39198 1.04058 0.85046 0.79932 0.74670 0.78463 1.17746 1.19938 1.17754 1.21540 1.00801 0.93768 0.98303 1.22025 0.87046 1.01272 0.96014 0.92854 0.92103 0.92892 0.91208 0.92941 0.92300 0.92406 0.92305 0.92051 0.89985 0.94896 0.94615 0.89849 0.92542 0.91658 0.90580 0.95531 0.95297 0.77208 0.91578 0.91839 0.90765 0.89425 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.19 71.98 0.66 -1.06 16 2 C -0.09 -1.16 2.92 -10.79 -0.03 -1.19 16 3 C -0.15 -1.66 8.95 71.98 0.64 -1.02 16 4 C -0.11 -1.63 4.61 30.59 0.14 -1.49 16 5 C 0.06 0.93 4.71 86.30 0.41 1.33 16 6 N -0.55 -11.21 4.66 -896.35 -4.17 -15.39 16 7 C 0.06 1.33 5.29 86.33 0.46 1.79 16 8 C -0.11 -2.83 5.23 30.65 0.16 -2.67 16 9 C -0.08 -2.38 2.29 -10.72 -0.02 -2.41 16 10 C 0.14 5.78 5.07 86.38 0.44 6.22 16 11 N -0.75 -34.90 5.31 -467.40 -2.48 -37.38 16 12 C 0.54 32.08 7.75 86.36 0.67 32.75 16 13 O -0.64 -44.21 15.02 -4.31 -0.06 -44.27 16 14 C -0.57 -33.20 9.54 24.83 0.24 -32.97 16 15 H 0.09 4.53 7.85 -2.92 -0.02 4.50 16 16 C 0.03 1.49 5.50 85.30 0.47 1.95 16 17 N -0.82 -51.58 11.83 21.84 0.26 -51.32 16 18 Si 1.00 41.46 29.56 68.60 2.03 43.49 16 19 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.25 -9.84 7.11 99.48 0.71 -9.14 16 22 C -0.11 -2.56 5.38 30.65 0.16 -2.40 16 23 C 0.06 1.26 5.46 86.33 0.47 1.73 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.63 6.56 -2.39 -0.02 0.61 16 31 H 0.06 0.94 6.43 -2.38 -0.02 0.93 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.20 6.41 -2.39 -0.02 1.19 16 34 H 0.03 0.52 8.12 -2.38 -0.02 0.50 16 35 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.08 1.65 6.21 -2.39 -0.01 1.64 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.79 7.27 -2.39 -0.02 1.78 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 40 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.39 15.66 7.67 -92.71 -0.71 14.95 16 43 H 0.27 15.56 8.29 -92.71 -0.77 14.79 16 44 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.09 1.48 8.02 -2.38 -0.02 1.46 16 47 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -75.44 364.55 0.64 -74.80 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.21 Total: 29.48 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 4.86 Total: 0.58 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -6.40 Total: -104.09 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.06 Total: -44.27 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -75.44 0.64 -74.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330879488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.874 kcal (2) G-P(sol) polarization free energy of solvation -75.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds