Wall clock time and date at job start Tue Mar 31 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47121 * 2 1 4 4 C 1.53001 * 109.47102 * 119.99868 * 2 1 3 5 5 N 1.46502 * 109.47573 * 174.57996 * 4 2 1 6 6 C 1.34774 * 120.00267 * 176.33393 * 5 4 2 7 7 O 1.21284 * 119.99997 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99593 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.46675 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47150 * 179.97438 * 9 8 6 11 11 H 1.07998 * 120.00059 * 0.02562 * 10 9 8 12 12 C 1.37873 * 120.00243 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00187 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00047 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 89.99628 * 14 12 10 16 16 H 1.48499 * 109.47561 * 210.00145 * 14 12 10 17 17 H 1.48508 * 109.47019 * 329.99804 * 14 12 10 18 18 N 1.46895 * 109.47294 * 239.99765 * 2 1 3 19 19 C 1.46848 * 111.00121 * 61.21872 * 18 2 1 20 20 C 1.53032 * 109.52445 * 174.15927 * 19 18 2 21 21 C 1.53125 * 109.27685 * 59.18354 * 20 19 18 22 22 C 1.53122 * 109.15686 * 302.34457 * 21 20 19 23 23 C 1.46843 * 111.00060 * 297.01165 * 18 2 1 24 24 H 1.09005 * 109.47260 * 300.00344 * 1 2 3 25 25 H 1.09000 * 109.46920 * 59.99948 * 1 2 3 26 26 H 1.09004 * 109.47324 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47169 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.46974 * 299.99384 * 3 2 1 29 29 H 1.08997 * 109.47178 * 59.99908 * 3 2 1 30 30 H 1.09007 * 109.47048 * 294.57750 * 4 2 1 31 31 H 1.09004 * 109.47402 * 54.57710 * 4 2 1 32 32 H 0.97009 * 119.99374 * 356.33279 * 5 4 2 33 33 H 1.08998 * 109.47149 * 299.99363 * 8 6 5 34 34 H 1.08996 * 109.47771 * 59.99978 * 8 6 5 35 35 H 1.09003 * 109.47411 * 299.99559 * 9 8 6 36 36 H 1.08997 * 109.47428 * 59.99604 * 9 8 6 37 37 H 0.97006 * 120.00117 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.46382 * 294.18238 * 19 18 2 39 39 H 1.09003 * 109.46067 * 54.14621 * 19 18 2 40 40 H 1.08996 * 109.50494 * 299.23938 * 20 19 18 41 41 H 1.09003 * 109.50511 * 179.11775 * 20 19 18 42 42 H 1.08998 * 109.51962 * 182.43971 * 21 20 19 43 43 H 1.08997 * 109.52253 * 62.24538 * 21 20 19 44 44 H 1.09006 * 109.50140 * 297.71164 * 22 21 20 45 45 H 1.08999 * 109.49733 * 177.59637 * 22 21 20 46 46 H 1.09001 * 109.46121 * 305.85527 * 23 18 2 47 47 H 1.09002 * 109.46557 * 65.81752 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4992 -0.8353 1.1859 6 6 4.1786 -1.3726 2.2185 7 8 3.5820 -1.7612 3.2003 8 6 5.6797 -1.4893 2.1534 9 6 6.1979 -2.1277 3.4437 10 6 7.6989 -2.2451 3.3784 11 1 8.2302 -1.8986 2.5043 12 6 8.3941 -2.7938 4.4351 13 7 9.7040 -2.8958 4.3784 14 14 7.4753 -3.3925 5.9474 15 1 7.1079 -4.8205 5.7704 16 1 8.3439 -3.2494 7.1433 17 1 6.2435 -2.5835 6.1307 18 7 2.0197 -0.6925 -1.1994 19 6 1.5728 -0.0101 -2.4204 20 6 2.2184 -0.6703 -3.6407 21 6 1.8210 -2.1484 -3.6853 22 6 2.2547 -2.8248 -2.3818 23 6 1.6081 -2.1021 -1.1981 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.7581 -0.1543 2.1366 31 1 1.5995 -1.7171 1.2992 32 1 3.9763 -0.5241 0.4007 33 1 5.9592 -2.1105 1.3025 34 1 6.1167 -0.4974 2.0382 35 1 5.9183 -1.5061 4.2944 36 1 5.7609 -3.1195 3.5593 37 1 10.1931 -3.2822 5.1217 38 1 0.4880 -0.0815 -2.5002 39 1 1.8654 1.0391 -2.3779 40 1 3.3028 -0.5870 -3.5685 41 1 1.8743 -0.1735 -4.5479 42 1 2.3134 -2.6327 -4.5285 43 1 0.7399 -2.2317 -3.7967 44 1 3.3397 -2.7755 -2.2898 45 1 1.9366 -3.8673 -2.3896 46 1 1.9262 -2.5724 -0.2676 47 1 0.5232 -2.1638 -1.2834 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330888840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:10 Heat of formation + Delta-G solvation = -54.153903 kcal Electronic energy + Delta-G solvation = -23291.260223 eV Core-core repulsion = 20087.077818 eV Total energy + Delta-G solvation = -3204.182405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40275 -38.82668 -36.23086 -33.48802 -33.37080 -31.31136 -31.21032 -30.62751 -27.65374 -27.18537 -25.23442 -24.28770 -22.91133 -21.11586 -20.41289 -19.52491 -18.98738 -17.17100 -16.79276 -15.88527 -15.66439 -15.07316 -14.95116 -14.65383 -14.51391 -14.16658 -13.96808 -13.85480 -13.64824 -13.27667 -12.96290 -12.65944 -12.50073 -12.45414 -12.24971 -11.98595 -11.86849 -11.49624 -11.41559 -11.33692 -11.05284 -10.94681 -10.90211 -10.48800 -10.39843 -10.08440 -9.97338 -9.72985 -9.15626 -9.08404 -8.69174 -8.50370 -8.45653 -5.98376 -3.96533 3.25904 3.41479 3.44253 3.47814 3.59484 3.76356 4.38437 4.52362 4.55385 4.62780 4.68781 4.75185 4.85048 5.02178 5.09819 5.16884 5.31921 5.32739 5.37305 5.38665 5.43713 5.49138 5.54838 5.55813 5.61788 5.70704 5.75056 5.75890 5.82407 5.83345 5.91603 6.00814 6.06697 6.16934 6.19496 6.20529 6.73419 6.80752 6.89557 6.93199 7.43885 7.51039 7.84084 8.00301 8.56407 8.80801 9.05576 9.65092 11.14556 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023587 B = 0.003594 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.791129 B = 7788.275733 C = 8271.802406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.095 3.905 3 C -0.141 4.141 4 C 0.133 3.867 5 N -0.728 5.728 6 C 0.508 3.492 7 O -0.548 6.548 8 C -0.121 4.121 9 C 0.002 3.998 10 C -0.523 4.523 11 H 0.072 0.928 12 C 0.068 3.932 13 N -0.905 5.905 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.261 1.261 18 N -0.523 5.523 19 C 0.051 3.949 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.117 4.117 23 C 0.049 3.951 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.406 0.594 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.263 0.737 38 H 0.033 0.967 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.515 6.984 -17.262 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.005 3.995 3 C -0.198 4.198 4 C 0.008 3.992 5 N -0.382 5.382 6 C 0.296 3.704 7 O -0.425 6.425 8 C -0.161 4.161 9 C -0.036 4.036 10 C -0.561 4.561 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.544 5.544 14 Si 0.704 3.296 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.185 1.185 18 N -0.248 5.248 19 C -0.077 4.077 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.078 4.078 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.241 0.759 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -20.275 6.655 -16.433 26.933 hybrid contribution -1.108 -0.270 0.373 1.200 sum -21.382 6.385 -16.059 27.493 Atomic orbital electron populations 1.22414 0.96181 1.02470 1.02712 1.21319 0.92971 0.94915 0.90296 1.21918 1.02403 0.93674 1.01851 1.21282 0.82140 0.99828 0.95923 1.46017 1.06529 1.64745 1.20948 1.21503 0.91336 0.75792 0.81744 1.90640 1.71155 1.48382 1.32347 1.21630 0.88352 1.03026 1.03084 1.19357 0.96230 0.96030 0.91975 1.21139 0.89840 1.40828 1.04287 0.90949 1.24970 0.94688 0.95214 0.98393 1.69917 1.06421 1.45763 1.32302 0.86800 0.80370 0.79806 0.82595 1.20283 1.21503 1.18525 1.62085 1.59589 1.02028 1.01108 1.22178 0.97287 0.98591 0.89631 1.21586 1.01735 0.95431 0.96703 1.21575 1.00531 0.95881 0.97839 1.21581 1.01816 0.98405 0.93686 1.22186 0.97387 0.88470 0.99768 0.91616 0.91971 0.92165 0.91314 0.92300 0.91910 0.91373 0.92139 0.75858 0.89749 0.89782 0.95911 0.96373 0.92784 0.94853 0.90348 0.90902 0.91860 0.91940 0.92638 0.90780 0.91707 0.90063 0.94872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 7.79 37.16 0.29 -1.11 16 2 C 0.09 0.85 0.37 -131.60 -0.05 0.80 16 3 C -0.14 -1.17 8.09 37.16 0.30 -0.86 16 4 C 0.13 1.61 3.93 -4.04 -0.02 1.60 16 5 N -0.73 -10.10 5.09 -60.29 -0.31 -10.41 16 6 C 0.51 9.51 7.83 -10.99 -0.09 9.42 16 7 O -0.55 -12.46 15.98 5.55 0.09 -12.37 16 8 C -0.12 -2.42 5.64 -27.88 -0.16 -2.58 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 11 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 14 Si 0.88 22.96 27.47 -169.99 -4.67 18.29 16 15 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.26 -6.82 6.54 56.52 0.37 -6.45 16 18 N -0.52 -4.63 3.84 -219.03 -0.84 -5.47 16 19 C 0.05 0.38 4.66 -3.84 -0.02 0.36 16 20 C -0.12 -0.84 6.09 -26.65 -0.16 -1.00 16 21 C -0.12 -0.89 6.00 -26.60 -0.16 -1.05 16 22 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 23 C 0.05 0.46 4.67 -3.84 -0.02 0.44 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 26 H 0.06 0.49 6.60 -51.93 -0.34 0.15 16 27 H 0.07 0.62 7.29 -51.93 -0.38 0.25 16 28 H 0.06 0.42 6.26 -51.93 -0.32 0.09 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.06 0.79 6.55 -51.93 -0.34 0.45 16 32 H 0.41 4.94 7.40 -40.82 -0.30 4.64 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.02 0.61 7.16 -51.93 -0.37 0.23 16 36 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.03 0.25 6.65 -51.93 -0.35 -0.10 16 39 H 0.08 0.56 5.97 -51.93 -0.31 0.25 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.90 6.05 -51.93 -0.31 0.59 16 47 H 0.03 0.30 6.68 -51.93 -0.35 -0.05 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -33.22 353.27 -8.74 -41.96 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.34 Total: -0.87 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -0.76 Total: -8.82 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: -0.38 Total: -43.51 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.67 Total: 18.29 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.22 -8.74 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330888840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.197 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds