Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 N 1.46906 * 109.46907 * 119.99683 * 2 1 3 6 6 C 1.46853 * 110.99832 * 184.21088 * 5 2 1 7 7 C 1.53033 * 109.52262 * 174.16246 * 6 5 2 8 8 C 1.53112 * 109.27992 * 59.17361 * 7 6 5 9 9 N 1.46501 * 109.52359 * 182.44184 * 8 7 6 10 10 C 1.34785 * 120.00096 * 274.68614 * 9 8 7 11 11 O 1.21280 * 119.99470 * 0.02562 * 10 9 8 12 12 C 1.50692 * 120.00184 * 179.97438 * 10 9 8 13 13 C 1.53001 * 109.47149 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47191 * 180.02562 * 13 12 10 15 15 H 1.08006 * 119.99626 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00176 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99945 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00136 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47164 * 90.00274 * 18 16 14 20 20 H 1.48505 * 109.47359 * 210.00062 * 18 16 14 21 21 H 1.48498 * 109.47475 * 330.00343 * 18 16 14 22 22 C 1.53120 * 109.16707 * 302.34582 * 8 7 6 23 23 C 1.46844 * 110.99887 * 59.99965 * 5 2 1 24 24 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 25 25 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 26 26 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 29 29 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 30 30 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 31 31 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 32 32 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.46125 * 294.17808 * 6 5 2 34 34 H 1.09003 * 109.46462 * 54.14202 * 6 5 2 35 35 H 1.09007 * 109.50330 * 299.23709 * 7 6 5 36 36 H 1.09002 * 109.50417 * 179.12117 * 7 6 5 37 37 H 1.09005 * 109.52421 * 62.25399 * 8 7 6 38 38 H 0.96999 * 120.00324 * 94.68512 * 9 8 7 39 39 H 1.08995 * 109.47465 * 300.00370 * 12 10 9 40 40 H 1.09001 * 109.46884 * 60.00217 * 12 10 9 41 41 H 1.09001 * 109.47465 * 299.99892 * 13 12 10 42 42 H 1.09001 * 109.46877 * 60.00424 * 13 12 10 43 43 H 0.97002 * 120.00154 * 180.02562 * 17 16 14 44 44 H 1.08996 * 109.49890 * 297.71825 * 22 8 7 45 45 H 1.08994 * 109.50831 * 177.59288 * 22 8 7 46 46 H 1.09000 * 109.46299 * 305.85220 * 23 5 2 47 47 H 1.08997 * 109.46352 * 65.82665 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 3.4841 -0.6255 1.2849 7 6 3.9470 -1.2268 2.6138 8 6 3.4779 -2.6817 2.7010 9 7 3.8678 -3.2450 3.9960 10 6 5.0968 -3.7740 4.1583 11 8 5.8801 -3.7832 3.2324 12 6 5.4980 -4.3529 5.4905 13 6 6.9307 -4.8832 5.4054 14 6 7.3318 -5.4627 6.7375 15 1 6.6343 -5.4541 7.5621 16 6 8.5889 -6.0039 6.9035 17 7 9.4383 -6.0139 5.8995 18 14 9.0863 -6.7216 8.5548 19 1 8.7319 -8.1632 8.5950 20 1 10.5514 -6.5667 8.7409 21 1 8.3709 -6.0056 9.6415 22 6 1.9538 -2.7278 2.5610 23 6 1.5487 -2.0829 1.2335 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 -1.7490 -1.2491 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 3.9220 -1.1874 0.4599 34 1 3.8042 0.4148 1.2258 35 1 3.5205 -0.6569 3.4393 36 1 5.0350 -1.1912 2.6701 37 1 3.9351 -3.2606 1.8985 38 1 3.2414 -3.2374 4.7366 39 1 5.4417 -3.5783 6.2551 40 1 4.8237 -5.1691 5.7498 41 1 6.9866 -5.6581 4.6409 42 1 7.6053 -4.0673 5.1459 43 1 10.3227 -6.3950 6.0162 44 1 1.4961 -2.1814 3.3856 45 1 1.6178 -3.7645 2.5795 46 1 0.4631 -2.1012 1.1373 47 1 1.9957 -2.6380 0.4088 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330911161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = -55.675206 kcal Electronic energy + Delta-G solvation = -22762.794844 eV Core-core repulsion = 19558.546471 eV Total energy + Delta-G solvation = -3204.248373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27036 -38.94416 -36.21509 -33.41898 -33.26682 -31.28472 -31.05109 -29.61173 -27.64298 -27.59425 -25.80717 -23.80345 -22.96878 -21.49238 -20.32482 -19.56499 -18.91962 -16.83575 -16.73264 -15.61598 -15.60853 -15.15049 -14.94362 -14.54416 -14.42352 -14.28648 -14.13633 -13.89040 -13.29757 -13.06143 -12.77769 -12.40021 -12.28565 -12.13749 -12.06037 -12.04209 -11.87011 -11.44813 -11.36193 -11.18250 -11.10774 -11.02471 -10.91718 -10.65414 -10.56374 -10.38896 -9.92235 -9.62910 -9.13560 -8.95352 -8.69216 -8.44769 -8.29821 -5.94057 -3.98302 3.31269 3.34652 3.40417 3.43115 3.54889 3.64836 4.45835 4.49230 4.60128 4.62580 4.81361 4.86754 4.99426 5.11939 5.16790 5.26277 5.34689 5.37031 5.40819 5.41156 5.44971 5.48909 5.56740 5.57574 5.63201 5.67059 5.75514 5.80426 5.83396 5.95349 5.98608 6.06080 6.15109 6.26730 6.29015 6.33066 6.84564 6.93216 6.94358 6.95685 7.76876 7.89543 7.97614 8.09917 8.41567 8.85282 9.10671 9.65092 11.16939 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.048108 B = 0.002676 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.878937 B =10462.508120 C =10649.220949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.101 3.899 3 C -0.142 4.142 4 C -0.183 4.183 5 N -0.526 5.526 6 C 0.053 3.947 7 C -0.126 4.126 8 C 0.144 3.856 9 N -0.740 5.740 10 C 0.510 3.490 11 O -0.536 6.536 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.122 4.122 23 C 0.054 3.946 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.396 0.604 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.261 0.739 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.501 13.057 -11.687 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 C -0.199 4.199 4 C -0.241 4.241 5 N -0.250 5.250 6 C -0.075 4.075 7 C -0.165 4.165 8 C 0.039 3.961 9 N -0.393 5.393 10 C 0.298 3.702 11 O -0.411 6.411 12 C -0.170 4.170 13 C 0.000 4.000 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.160 4.160 23 C -0.074 4.074 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.230 0.770 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -19.910 13.225 -11.998 26.744 hybrid contribution 0.396 -0.857 0.499 1.068 sum -19.514 12.368 -11.499 25.806 Atomic orbital electron populations 1.21893 0.93743 1.01971 1.02046 1.21059 0.95383 0.94346 0.88074 1.21932 1.01259 0.94657 1.02076 1.22511 1.01805 1.01111 0.98721 1.62217 1.10494 1.14581 1.37755 1.22157 0.87086 1.01174 0.97092 1.21983 1.01465 0.95692 0.97348 1.20874 0.94026 0.93928 0.87246 1.46266 1.16464 1.63002 1.13538 1.21554 0.80462 0.76414 0.91731 1.90657 1.50872 1.56464 1.43155 1.21859 1.02952 1.00383 0.91841 1.18890 0.87545 0.96671 0.96922 1.21236 0.98977 1.39117 0.97138 0.92625 1.25028 0.96647 0.96137 0.96623 1.70000 1.06772 1.45325 1.30798 0.86593 0.77687 0.79436 0.84230 1.20687 1.21234 1.19892 1.21858 0.95064 1.00814 0.98310 1.22106 1.00490 0.88246 0.96572 0.91761 0.92374 0.92505 0.92295 0.92342 0.91723 0.92327 0.92145 0.92268 0.94488 0.90147 0.91076 0.90824 0.90161 0.77014 0.90301 0.90350 0.95898 0.95856 0.92977 0.90628 0.91000 0.90128 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.25 37.16 0.31 -0.63 16 2 C 0.10 0.79 0.71 -131.60 -0.09 0.70 16 3 C -0.14 -1.04 8.12 37.16 0.30 -0.74 16 4 C -0.18 -1.42 7.79 37.16 0.29 -1.13 16 5 N -0.53 -4.88 4.47 -219.01 -0.98 -5.86 16 6 C 0.05 0.56 4.67 -3.83 -0.02 0.54 16 7 C -0.13 -1.56 5.67 -26.66 -0.15 -1.72 16 8 C 0.14 1.86 2.52 -67.81 -0.17 1.69 16 9 N -0.74 -10.56 5.08 -53.69 -0.27 -10.83 16 10 C 0.51 9.94 7.80 -10.99 -0.09 9.86 16 11 O -0.54 -12.78 15.65 5.56 0.09 -12.69 16 12 C -0.13 -2.69 5.64 -27.89 -0.16 -2.84 16 13 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 14 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 15 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.74 13.29 55.43 0.74 -27.01 16 18 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.12 -1.18 5.57 -26.65 -0.15 -1.33 16 23 C 0.05 0.49 4.64 -3.83 -0.02 0.47 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.38 6.28 -51.93 -0.33 0.05 16 27 H 0.06 0.45 6.22 -51.93 -0.32 0.13 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.51 6.63 -51.93 -0.34 0.17 16 33 H 0.04 0.42 6.71 -51.93 -0.35 0.07 16 34 H 0.08 0.79 5.90 -51.93 -0.31 0.48 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.24 7.58 -51.93 -0.39 0.85 16 38 H 0.40 4.50 8.61 -40.82 -0.35 4.14 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.08 0.63 6.01 -51.93 -0.31 0.32 16 47 H 0.04 0.36 6.63 -51.93 -0.34 0.02 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -33.37 358.46 -8.94 -42.32 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.42 Total: -0.08 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.47 Total: -8.09 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.52 Total: -43.70 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.37 -8.94 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330911161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.360 kcal (2) G-P(sol) polarization free energy of solvation -33.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds