Wall clock time and date at job start Tue Mar 31 2020 06:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46820 * 2 1 4 4 C 1.52998 * 109.47307 * 119.99963 * 2 1 3 5 5 N 1.46499 * 109.46921 * 67.11846 * 4 2 1 6 6 C 1.34782 * 119.99741 * 84.83664 * 5 4 2 7 7 O 1.21585 * 120.00006 * 3.46109 * 6 5 4 8 8 N 1.34769 * 119.99775 * 183.46426 * 6 5 4 9 9 C 1.46502 * 120.00113 * 173.97258 * 8 6 5 10 10 C 1.52997 * 109.47432 * 184.95949 * 9 8 6 11 11 C 1.50700 * 115.54728 * 305.56446 * 10 9 8 12 12 H 1.07996 * 120.00192 * 148.67486 * 11 10 9 13 13 C 1.37878 * 120.00368 * 328.67549 * 11 10 9 14 14 N 1.31521 * 119.99749 * 353.96501 * 13 11 10 15 15 Si 1.86801 * 120.00492 * 173.96181 * 13 11 10 16 16 H 1.48504 * 109.46650 * 94.99701 * 15 13 11 17 17 H 1.48492 * 109.47022 * 214.99856 * 15 13 11 18 18 H 1.48499 * 109.46950 * 335.00085 * 15 13 11 19 19 C 1.53001 * 117.50105 * 159.89742 * 10 9 8 20 20 C 1.52999 * 117.50228 * 91.23689 * 10 9 8 21 21 C 1.46502 * 120.00223 * 264.83249 * 5 4 2 22 22 C 1.53000 * 109.46922 * 120.19820 * 21 5 4 23 23 C 1.52999 * 109.47219 * 240.20116 * 21 5 4 24 24 H 1.09004 * 109.46963 * 65.15899 * 1 2 3 25 25 H 1.09002 * 109.46752 * 185.15914 * 1 2 3 26 26 H 1.08994 * 109.46887 * 305.15765 * 1 2 3 27 27 H 1.08998 * 109.46840 * 240.00291 * 2 1 3 28 28 H 1.08995 * 109.46831 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47293 * 299.99632 * 3 2 1 30 30 H 1.08995 * 109.47167 * 59.99966 * 3 2 1 31 31 H 1.09010 * 109.46970 * 307.12105 * 4 2 1 32 32 H 1.08996 * 109.46869 * 187.12307 * 4 2 1 33 33 H 0.97001 * 120.00458 * 353.68558 * 8 6 5 34 34 H 1.09001 * 109.46417 * 304.95456 * 9 8 6 35 35 H 1.08997 * 109.47241 * 64.95307 * 9 8 6 36 36 H 0.96997 * 120.00379 * 175.00147 * 14 13 11 37 37 H 1.09004 * 117.49435 * 359.97438 * 19 10 9 38 38 H 1.09001 * 117.49798 * 145.01513 * 19 10 9 39 39 H 1.09006 * 117.49566 * 214.98061 * 20 10 9 40 40 H 1.08997 * 117.49684 * 359.97015 * 20 10 9 41 41 H 1.09002 * 109.46701 * 0.19702 * 21 5 4 42 42 H 1.09000 * 109.47012 * 65.84823 * 22 21 5 43 43 H 1.08995 * 109.46648 * 185.84601 * 22 21 5 44 44 H 1.08999 * 109.47217 * 305.84309 * 22 21 5 45 45 H 1.09000 * 109.47231 * 65.63875 * 23 21 5 46 46 H 1.08994 * 109.47248 * 185.64916 * 23 21 5 47 47 H 1.09010 * 109.46651 * 305.64179 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6965 -2.1430 1.1667 6 6 2.5024 -2.9934 0.5004 7 8 3.5460 -2.5930 0.0218 8 7 2.1515 -4.2875 0.3647 9 6 2.9583 -5.1817 -0.4695 10 6 2.2804 -6.5506 -0.5536 11 6 1.9649 -7.2019 0.7683 12 1 1.1036 -7.8469 0.8606 13 6 2.7757 -6.9744 1.8600 14 7 3.8883 -6.2869 1.7208 15 14 2.2942 -7.6425 3.5367 16 1 2.9623 -8.9500 3.7589 17 1 2.7163 -6.6854 4.5906 18 1 0.8214 -7.8232 3.5931 19 6 2.6760 -7.4648 -1.7149 20 6 1.3041 -6.7858 -1.7079 21 6 0.4771 -2.6404 1.8084 22 6 -0.4347 -3.2690 0.7527 23 6 0.8450 -3.6926 2.8564 24 1 -0.3633 0.4317 -0.9326 25 1 -0.3633 -1.0235 0.0924 26 1 -0.3633 0.5917 0.8402 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.5764 -0.2862 2.1347 32 1 3.1226 -0.6121 1.3151 33 1 1.3672 -4.6280 0.8227 34 1 3.0506 -4.7598 -1.4703 35 1 3.9493 -5.2933 -0.0295 36 1 4.4218 -6.0646 2.4998 37 1 3.4190 -7.0906 -2.4193 38 1 2.7077 -8.5373 -1.5230 39 1 0.4337 -7.4120 -1.5112 40 1 1.1444 -5.9651 -2.4071 41 1 -0.0427 -1.8129 2.2913 42 1 0.0435 -4.1587 0.3430 43 1 -1.3843 -3.5452 1.2109 44 1 -0.6127 -2.5509 -0.0477 45 1 1.4109 -3.2222 3.6605 46 1 -0.0648 -4.1346 3.2625 47 1 1.4513 -4.4708 2.3925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331764132.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:55 Heat of formation + Delta-G solvation = 3.090781 kcal Electronic energy + Delta-G solvation = -24696.305876 eV Core-core repulsion = 21494.605787 eV Total energy + Delta-G solvation = -3201.700089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96978 -37.06463 -36.12569 -35.22753 -32.71929 -32.10906 -30.91572 -27.48003 -26.67394 -26.46852 -25.57963 -24.51288 -21.83570 -21.20740 -20.18159 -19.36467 -18.87731 -16.81829 -16.23333 -15.84318 -14.99800 -14.75381 -14.68834 -14.11235 -13.95141 -13.88112 -13.58749 -13.12213 -12.85547 -12.81803 -12.49259 -12.19188 -12.05429 -11.85445 -11.72819 -11.49924 -11.27990 -11.09546 -11.06967 -10.83395 -10.72929 -10.57384 -10.50820 -10.45352 -10.35278 -10.22509 -9.61308 -9.17270 -9.06446 -8.83668 -8.24303 -8.17584 -7.54559 -5.99699 -4.18382 3.18808 3.29187 3.29971 3.38754 4.11124 4.28678 4.67426 4.95028 5.03137 5.06098 5.15022 5.20638 5.37025 5.45747 5.52563 5.59926 5.65785 5.79010 5.84409 5.88096 5.88341 6.02907 6.04927 6.07452 6.14401 6.16903 6.21475 6.30437 6.35078 6.48774 6.57571 6.63306 6.65556 6.71101 6.78706 6.91284 7.03992 7.20159 7.28923 7.61546 7.74258 7.85963 8.02490 8.33940 8.77927 9.03405 9.43294 9.59426 10.89324 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.006273 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.466737 B = 4462.444599 C = 4977.189480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.114 4.114 3 C -0.142 4.142 4 C 0.143 3.857 5 N -0.633 5.633 6 C 0.702 3.298 7 O -0.607 6.607 8 N -0.708 5.708 9 C 0.176 3.824 10 C 0.037 3.963 11 C -0.497 4.497 12 H 0.060 0.940 13 C 0.075 3.925 14 N -0.859 5.859 15 Si 0.881 3.119 16 H -0.280 1.280 17 H -0.283 1.283 18 H -0.271 1.271 19 C -0.198 4.198 20 C -0.213 4.213 21 C 0.140 3.860 22 C -0.189 4.189 23 C -0.190 4.190 24 H 0.047 0.953 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.402 0.598 34 H 0.018 0.982 35 H 0.110 0.890 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 10.327 0.648 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.134 4.134 3 C -0.200 4.200 4 C 0.019 3.981 5 N -0.371 5.371 6 C 0.404 3.596 7 O -0.487 6.487 8 N -0.366 5.366 9 C 0.052 3.948 10 C 0.036 3.964 11 C -0.535 4.535 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.495 5.495 15 Si 0.708 3.292 16 H -0.206 1.206 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.237 4.237 20 C -0.251 4.251 21 C 0.035 3.965 22 C -0.247 4.247 23 C -0.249 4.249 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.245 0.755 34 H 0.036 0.964 35 H 0.128 0.872 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.149 10.588 0.395 12.781 hybrid contribution -0.652 -0.587 1.108 1.413 sum -7.800 10.001 1.503 12.772 Atomic orbital electron populations 1.22098 0.95629 1.02752 1.00906 1.21532 0.95814 0.95969 1.00092 1.21748 1.01197 0.95771 1.01249 1.21240 1.01053 0.79382 0.96384 1.47267 1.24560 1.07470 1.57792 1.15948 0.82867 0.81593 0.79228 1.90813 1.24560 1.77836 1.55463 1.45764 1.31917 1.06874 1.52066 1.20888 0.97746 0.85915 0.90226 1.19248 0.95564 0.92679 0.88861 1.20517 1.10850 1.29331 0.92756 0.92160 1.24965 0.94146 0.95032 0.98821 1.69903 1.12391 1.37626 1.29562 0.86759 0.79017 0.79204 0.84227 1.20595 1.20885 1.19615 1.22925 0.96605 0.98892 1.05269 1.22956 0.93384 1.03105 1.05627 1.20995 0.85491 0.96910 0.93074 1.22704 0.99786 1.02654 0.99529 1.22561 1.02671 1.00348 0.99289 0.93352 0.91187 0.93237 0.90655 0.92540 0.92917 0.92986 0.91454 0.90451 0.75459 0.96413 0.87224 0.92679 0.91481 0.90275 0.90722 0.91414 0.89854 0.90121 0.91599 0.91543 0.92499 0.91616 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.02 37.16 0.34 -1.44 16 2 C -0.11 -1.51 3.08 -90.62 -0.28 -1.78 16 3 C -0.14 -1.55 9.19 37.16 0.34 -1.20 16 4 C 0.14 2.10 4.79 -4.04 -0.02 2.08 16 5 N -0.63 -10.77 2.20 -171.80 -0.38 -11.15 16 6 C 0.70 15.26 7.61 -86.92 -0.66 14.59 16 7 O -0.61 -15.31 16.00 5.29 0.08 -15.23 16 8 N -0.71 -15.58 3.51 -65.23 -0.23 -15.81 16 9 C 0.18 4.27 4.61 -4.04 -0.02 4.26 16 10 C 0.04 0.88 2.07 -155.66 -0.32 0.56 16 11 C -0.50 -12.51 8.34 -34.44 -0.29 -12.80 16 12 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 13 C 0.08 1.90 5.05 -17.82 -0.09 1.81 16 14 N -0.86 -22.85 10.27 55.43 0.57 -22.28 16 15 Si 0.88 19.74 29.55 -169.99 -5.02 14.72 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C -0.20 -4.38 9.96 -26.69 -0.27 -4.64 16 20 C -0.21 -4.47 9.92 -26.69 -0.26 -4.74 16 21 C 0.14 2.01 2.33 -67.93 -0.16 1.85 16 22 C -0.19 -2.62 8.68 37.16 0.32 -2.30 16 23 C -0.19 -3.05 9.02 37.16 0.34 -2.71 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.84 3.63 -51.93 -0.19 0.66 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.81 7.81 -51.92 -0.41 0.40 16 32 H 0.08 1.28 7.53 -51.93 -0.39 0.89 16 33 H 0.40 8.43 2.42 -40.82 -0.10 8.33 16 34 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.11 3.03 5.92 -51.93 -0.31 2.73 16 36 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 0.98 7.73 -51.93 -0.40 0.58 16 42 H 0.08 1.35 5.04 -51.93 -0.26 1.09 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.88 5.53 -51.93 -0.29 0.60 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 1.79 5.16 -51.92 -0.27 1.52 16 LS Contribution 357.37 15.07 5.39 5.39 Total: -1.00 -28.22 357.37 -8.69 -36.91 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -8.07 Total: 13.92 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.03 Total: -6.48 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.04 Total: -49.23 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.08 Total: -15.23 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.22 -8.69 -36.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331764132.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.005 kcal (2) G-P(sol) polarization free energy of solvation -28.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds