Wall clock time and date at job start Tue Mar 31 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 C 1.52996 * 109.47251 * 120.00409 * 2 1 3 5 5 H 1.09006 * 108.44509 * 297.24925 * 4 2 1 6 6 C 1.52571 * 108.39046 * 179.62595 * 4 2 1 7 7 C 1.50884 * 109.35586 * 153.81969 * 6 4 2 8 8 C 1.54300 * 110.23306 * 91.79887 * 7 6 4 9 9 N 1.47609 * 111.94310 * 319.70000 * 8 7 6 10 10 C 1.34776 * 118.64311 * 137.78091 * 9 8 7 11 11 O 1.21585 * 120.00360 * 4.75826 * 10 9 8 12 12 N 1.34774 * 119.99775 * 184.48624 * 10 9 8 13 13 C 1.46503 * 120.00242 * 175.06655 * 12 10 9 14 14 C 1.52999 * 109.47344 * 180.02562 * 13 12 10 15 15 C 1.50695 * 109.47173 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00157 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99715 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99919 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47340 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47033 * 119.99887 * 19 17 15 22 22 H 1.48504 * 109.47156 * 239.99743 * 19 17 15 23 23 C 1.44574 * 122.70980 * 317.49614 * 9 8 7 24 24 C 1.47094 * 108.51273 * 54.93452 * 4 2 1 25 25 H 1.09002 * 109.47219 * 59.99826 * 1 2 3 26 26 H 1.09002 * 109.46972 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46779 * 299.99895 * 1 2 3 28 28 H 1.09000 * 109.46779 * 240.00105 * 2 1 3 29 29 H 1.09001 * 109.47684 * 186.05793 * 3 2 1 30 30 H 1.09003 * 109.47737 * 306.05653 * 3 2 1 31 31 H 1.08999 * 109.47510 * 66.05668 * 3 2 1 32 32 H 1.08993 * 109.48646 * 273.78487 * 6 4 2 33 33 H 1.09000 * 109.49002 * 33.85744 * 6 4 2 34 34 H 1.09000 * 109.36289 * 212.07315 * 7 6 4 35 35 H 1.08996 * 109.36995 * 331.82194 * 7 6 4 36 36 H 1.09001 * 109.13987 * 199.01434 * 8 7 6 37 37 H 1.09001 * 108.95790 * 80.26106 * 8 7 6 38 38 H 0.97002 * 120.00241 * 355.07122 * 12 10 9 39 39 H 1.09002 * 109.46599 * 300.00012 * 13 12 10 40 40 H 1.09000 * 109.46663 * 59.99857 * 13 12 10 41 41 H 1.09006 * 109.46784 * 300.00131 * 14 13 12 42 42 H 1.09002 * 109.46906 * 59.99666 * 14 13 12 43 43 H 0.97001 * 119.99903 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.45261 * 211.02603 * 23 9 8 45 45 H 1.09001 * 109.45530 * 330.94746 * 23 9 8 46 46 H 1.08995 * 109.32841 * 63.64233 * 24 4 2 47 47 H 1.09003 * 109.18930 * 304.07137 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.7086 -0.1667 2.1271 6 6 3.5655 -0.7151 1.2195 7 6 4.0934 -0.8049 2.6301 8 6 4.3268 -2.2796 3.0196 9 7 3.2499 -3.1584 2.5227 10 6 3.5834 -4.3497 1.9879 11 8 4.7417 -4.7190 2.0004 12 7 2.6319 -5.1341 1.4440 13 6 3.0068 -6.3780 0.7668 14 6 1.7484 -7.0731 0.2433 15 6 2.1340 -8.3528 -0.4527 16 1 3.1729 -8.6414 -0.5157 17 6 1.1608 -9.1549 -1.0099 18 7 -0.1041 -8.8032 -0.9336 19 14 1.6389 -10.7409 -1.8732 20 1 3.1138 -10.9068 -1.8227 21 1 0.9876 -11.8897 -1.1943 22 1 1.1956 -10.6866 -3.2895 23 6 1.8519 -2.7965 2.5917 24 6 1.4402 -2.0638 1.2909 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.1246 1.4444 -0.1085 30 1 1.5909 1.9867 -0.8308 31 1 1.7680 1.9241 0.9392 32 1 3.9214 -1.5688 0.6429 33 1 3.9165 0.2079 0.7579 34 1 5.0347 -0.2595 2.6991 35 1 3.3695 -0.3648 3.3158 36 1 4.3756 -2.3590 4.1056 37 1 5.2763 -2.6109 2.5991 38 1 1.6989 -4.8751 1.5008 39 1 3.6703 -6.1515 -0.0678 40 1 3.5190 -7.0345 1.4703 41 1 1.0846 -7.2994 1.0778 42 1 1.2367 -6.4163 -0.4602 43 1 -0.7889 -9.3676 -1.3253 44 1 1.2491 -3.6972 2.7071 45 1 1.6887 -2.1392 3.4457 46 1 1.7814 -2.6383 0.4298 47 1 0.3546 -1.9723 1.2565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332052326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:52 Heat of formation + Delta-G solvation = -54.329916 kcal Electronic energy + Delta-G solvation = -23340.913847 eV Core-core repulsion = 20136.723810 eV Total energy + Delta-G solvation = -3204.190037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.49584 -38.57858 -35.69528 -34.83748 -33.35342 -32.47122 -31.50939 -29.46817 -27.83824 -26.40363 -25.26458 -24.42270 -22.11514 -21.22220 -20.74954 -19.94289 -19.14231 -17.77498 -16.50102 -15.98823 -15.84385 -15.28686 -14.70434 -14.48555 -14.46188 -14.32590 -13.89197 -13.68287 -13.17593 -12.93747 -12.84982 -12.72337 -12.45262 -12.25342 -12.14516 -11.78226 -11.69909 -11.31258 -11.11595 -11.04163 -11.02114 -10.87278 -10.59153 -10.56168 -10.32077 -10.28290 -10.20237 -9.79263 -9.49592 -9.20983 -8.62582 -8.42687 -8.10360 -6.07161 -4.09363 3.01171 3.29995 3.37599 3.43238 3.62203 4.30293 4.42668 4.51452 4.56630 4.65979 4.82603 4.96584 5.06575 5.10595 5.19670 5.24494 5.30140 5.40289 5.44013 5.51831 5.60624 5.66320 5.66749 5.71985 5.81116 5.83264 5.90095 5.95324 6.03332 6.09243 6.13377 6.19324 6.29525 6.35948 6.42501 6.44668 6.78704 6.82826 7.07562 7.24883 7.59623 7.66527 7.92506 8.28898 8.45352 8.95912 9.05656 9.55310 11.04595 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019410 B = 0.003782 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.222332 B = 7401.839755 C = 8359.985106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.074 4.074 5 H 0.064 0.936 6 C -0.117 4.117 7 C -0.129 4.129 8 C 0.131 3.869 9 N -0.626 5.626 10 C 0.697 3.303 11 O -0.599 6.599 12 N -0.739 5.739 13 C 0.139 3.861 14 C 0.013 3.987 15 C -0.519 4.519 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.114 3.886 24 C -0.144 4.144 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.393 0.607 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.261 0.739 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 21.317 6.299 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.093 4.093 5 H 0.082 0.918 6 C -0.154 4.154 7 C -0.167 4.167 8 C 0.008 3.992 9 N -0.364 5.364 10 C 0.398 3.602 11 O -0.478 6.478 12 N -0.394 5.394 13 C 0.016 3.984 14 C -0.024 4.024 15 C -0.558 4.558 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.011 4.011 24 C -0.182 4.182 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.228 0.772 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.039 0.961 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.071 20.980 6.245 21.988 hybrid contribution -0.456 -0.713 -0.484 0.975 sum 1.615 20.267 5.761 21.132 Atomic orbital electron populations 1.21957 0.95359 1.02158 1.01405 1.21253 0.95698 0.95993 0.98643 1.21918 1.01017 0.96111 1.01426 1.20084 0.95186 0.96187 0.97802 0.91804 1.21232 0.94955 1.02404 0.96815 1.21823 1.01588 0.95917 0.97400 1.21677 0.90877 0.88702 0.97954 1.46874 1.06366 1.17684 1.65493 1.16098 0.85288 0.80404 0.78401 1.90861 1.18471 1.73864 1.64623 1.45705 1.08698 1.24979 1.59976 1.21574 0.99957 0.82031 0.94824 1.19317 0.91459 0.95271 0.96363 1.21097 0.93610 1.05425 1.35626 0.92191 1.24989 0.94903 0.98240 0.96164 1.69966 0.99743 1.38215 1.45441 0.86469 0.78811 0.83145 0.79218 1.19569 1.20959 1.20969 1.21452 0.81975 0.99815 0.97828 1.21538 1.01192 0.96544 0.98947 0.93004 0.91892 0.92873 0.91249 0.92425 0.93032 0.92881 0.91490 0.91417 0.90970 0.91884 0.92706 0.89426 0.77189 0.92972 0.92821 0.96051 0.96032 0.92960 0.90758 0.90661 0.91127 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.65 37.16 0.32 -0.93 16 2 C -0.10 -0.85 2.47 -90.62 -0.22 -1.07 16 3 C -0.15 -1.12 8.76 37.15 0.33 -0.80 16 4 C -0.07 -0.67 1.31 -93.68 -0.12 -0.79 16 5 H 0.06 0.53 7.36 -51.93 -0.38 0.15 16 6 C -0.12 -1.13 4.83 -28.01 -0.14 -1.27 16 7 C -0.13 -1.15 5.71 -27.11 -0.15 -1.30 16 8 C 0.13 1.55 6.11 -2.75 -0.02 1.54 16 9 N -0.63 -8.58 2.23 -178.04 -0.40 -8.98 16 10 C 0.70 12.78 8.20 -86.92 -0.71 12.07 16 11 O -0.60 -13.30 15.66 5.29 0.08 -13.22 16 12 N -0.74 -13.65 5.39 -65.22 -0.35 -14.01 16 13 C 0.14 3.07 5.62 -4.04 -0.02 3.05 16 14 C 0.01 0.34 5.09 -27.89 -0.14 0.20 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 16 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.22 13.29 55.43 0.74 -25.49 16 19 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.11 1.23 5.08 -4.08 -0.02 1.21 16 24 C -0.14 -1.46 4.59 -28.58 -0.13 -1.59 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.55 6.20 -51.93 -0.32 0.23 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.43 6.21 -51.93 -0.32 0.11 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.84 7.49 -51.93 -0.39 0.45 16 33 H 0.07 0.59 5.55 -51.93 -0.29 0.30 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.50 7.32 -51.93 -0.38 0.12 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.23 7.01 -51.93 -0.36 0.86 16 38 H 0.39 6.42 6.13 -40.82 -0.25 6.17 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.07 0.82 6.37 -51.93 -0.33 0.49 16 45 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 0.72 5.86 -51.93 -0.30 0.42 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -31.65 355.70 -9.40 -41.05 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.37 Total: 1.77 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.45 Total: -3.00 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.01 Total: -48.47 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.65 -9.40 -41.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332052326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.282 kcal (2) G-P(sol) polarization free energy of solvation -31.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds