Wall clock time and date at job start Tue Mar 31 2020 06:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47034 * 2 1 4 4 C 1.52999 * 109.47454 * 120.00596 * 2 1 3 5 5 H 1.09007 * 108.31156 * 301.03228 * 4 2 1 6 6 C 1.52564 * 108.51141 * 58.64837 * 4 2 1 7 7 C 1.50886 * 109.35088 * 206.26883 * 6 4 2 8 8 C 1.53941 * 110.09661 * 268.11438 * 7 6 4 9 9 N 1.47601 * 112.14279 * 40.56766 * 8 7 6 10 10 C 1.34772 * 118.64911 * 222.11025 * 9 8 7 11 11 O 1.21595 * 119.99880 * 4.95042 * 10 9 8 12 12 N 1.34771 * 120.00515 * 184.95537 * 10 9 8 13 13 C 1.46504 * 120.00115 * 184.99377 * 12 10 9 14 14 C 1.53000 * 109.47250 * 180.02562 * 13 12 10 15 15 C 1.50698 * 109.47308 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99918 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00225 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00423 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99926 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47010 * 89.99414 * 19 17 15 21 21 H 1.48501 * 109.47240 * 209.99639 * 19 17 15 22 22 H 1.48502 * 109.46948 * 329.99690 * 19 17 15 23 23 C 1.44585 * 122.71251 * 42.13604 * 9 8 7 24 24 C 1.47094 * 108.51346 * 183.42065 * 4 2 1 25 25 H 1.08997 * 109.47111 * 291.77206 * 1 2 3 26 26 H 1.09000 * 109.47400 * 51.77337 * 1 2 3 27 27 H 1.09004 * 109.47020 * 171.77487 * 1 2 3 28 28 H 1.09006 * 109.47308 * 240.00753 * 2 1 3 29 29 H 1.08998 * 109.47128 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47440 * 300.00340 * 3 2 1 31 31 H 1.09004 * 109.46972 * 60.00217 * 3 2 1 32 32 H 1.08993 * 109.49037 * 86.31050 * 6 4 2 33 33 H 1.09001 * 109.51429 * 326.24807 * 6 4 2 34 34 H 1.09007 * 109.36119 * 147.92795 * 7 6 4 35 35 H 1.08999 * 109.26650 * 28.24520 * 7 6 4 36 36 H 1.09001 * 108.94596 * 161.25504 * 8 7 6 37 37 H 1.08996 * 108.94780 * 279.88477 * 8 7 6 38 38 H 0.97002 * 120.00364 * 4.98567 * 12 10 9 39 39 H 1.09002 * 109.46930 * 299.99250 * 13 12 10 40 40 H 1.08998 * 109.47440 * 59.99514 * 13 12 10 41 41 H 1.09008 * 109.46899 * 299.99425 * 14 13 12 42 42 H 1.08998 * 109.47329 * 59.99406 * 14 13 12 43 43 H 0.96996 * 120.00372 * 180.02562 * 18 17 15 44 44 H 1.08995 * 109.45145 * 149.23333 * 23 9 8 45 45 H 1.09005 * 109.42696 * 29.29696 * 23 9 8 46 46 H 1.08997 * 109.32819 * 296.20305 * 24 4 2 47 47 H 1.09007 * 109.32616 * 55.67690 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 1.6512 -0.2039 2.1262 6 6 1.4919 -2.1451 1.2441 7 6 1.4073 -2.6534 2.6622 8 6 2.7055 -3.3904 3.0382 9 7 3.9052 -2.7028 2.5218 10 6 4.8930 -3.4443 1.9825 11 8 4.7478 -4.6438 1.8465 12 7 6.0418 -2.8563 1.5941 13 6 7.0713 -3.6415 0.9087 14 6 8.2645 -2.7420 0.5802 15 6 9.3238 -3.5498 -0.1243 16 1 9.1620 -4.5998 -0.3187 17 6 10.4991 -2.9483 -0.5216 18 7 11.4238 -3.6534 -1.1359 19 14 10.7787 -1.1321 -0.1859 20 1 11.4323 -0.9682 1.1374 21 1 11.6518 -0.5620 -1.2433 22 1 9.4743 -0.4223 -0.1850 23 6 4.0646 -1.2667 2.5712 24 6 3.5084 -0.6374 1.2701 25 1 -0.3633 0.3812 0.9543 26 1 -0.3634 0.6359 -0.8073 27 1 -0.3633 -1.0171 -0.1470 28 1 1.8933 -0.5137 -0.8901 29 1 3.1299 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 2.1556 -2.7883 0.6663 33 1 0.4984 -2.1512 0.7957 34 1 0.5641 -3.3384 2.7509 35 1 1.2613 -1.8108 3.3381 36 1 2.7742 -3.4546 4.1242 37 1 2.6714 -4.3993 2.6272 38 1 6.1870 -1.9131 1.7682 39 1 7.3979 -4.4558 1.5556 40 1 6.6609 -4.0526 -0.0136 41 1 7.9382 -1.9274 -0.0666 42 1 8.6748 -2.3313 1.5028 43 1 12.2508 -3.2303 -1.4151 44 1 5.1223 -1.0221 2.6694 45 1 3.5194 -0.8706 3.4279 46 1 3.9126 -1.1708 0.4098 47 1 3.8107 0.4086 1.2174 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332052327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:56 Heat of formation + Delta-G solvation = -48.851289 kcal Electronic energy + Delta-G solvation = -23372.367853 eV Core-core repulsion = 20168.415387 eV Total energy + Delta-G solvation = -3203.952466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.57537 -38.66450 -35.78551 -34.95915 -33.39969 -32.47939 -31.59799 -29.95606 -27.93680 -26.50119 -25.38308 -24.47152 -22.14079 -21.15364 -20.74490 -20.01429 -19.17009 -17.85751 -16.91122 -16.16893 -15.93541 -15.32713 -14.81779 -14.56075 -14.44716 -14.11885 -14.03633 -13.79077 -13.31103 -13.04428 -12.99366 -12.75063 -12.58744 -12.51664 -12.24180 -11.86086 -11.76929 -11.42930 -11.37102 -11.17306 -11.09515 -10.92616 -10.63096 -10.38746 -10.35853 -10.26887 -10.17739 -9.94201 -9.64090 -9.29641 -8.70498 -8.59458 -8.21975 -6.08972 -4.08714 2.92486 3.26295 3.33684 3.35062 3.53684 4.21511 4.39250 4.39360 4.49111 4.59952 4.76546 4.89630 4.99617 5.04916 5.13356 5.18430 5.23983 5.31477 5.37661 5.46018 5.54682 5.59199 5.60452 5.65333 5.74652 5.77316 5.83558 5.89046 5.97088 6.02495 6.06982 6.10941 6.15514 6.25322 6.28929 6.36029 6.61613 6.71806 6.87758 7.06640 7.27578 7.31116 7.70126 8.30014 8.48219 8.94250 8.97212 9.51292 11.04175 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018515 B = 0.004077 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.930325 B = 6865.443381 C = 7859.524057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.151 4.151 4 C -0.075 4.075 5 H 0.064 0.936 6 C -0.117 4.117 7 C -0.129 4.129 8 C 0.129 3.871 9 N -0.626 5.626 10 C 0.698 3.302 11 O -0.595 6.595 12 N -0.742 5.742 13 C 0.147 3.853 14 C -0.021 4.021 15 C -0.521 4.521 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.899 5.899 19 Si 0.882 3.118 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C 0.115 3.885 24 C -0.142 4.142 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.391 0.609 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.021 0.979 42 H 0.016 0.984 43 H 0.264 0.736 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.923 10.928 7.369 26.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.093 4.093 5 H 0.082 0.918 6 C -0.155 4.155 7 C -0.167 4.167 8 C 0.006 3.994 9 N -0.364 5.364 10 C 0.399 3.601 11 O -0.474 6.474 12 N -0.398 5.398 13 C 0.025 3.975 14 C -0.059 4.059 15 C -0.559 4.559 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.010 4.010 24 C -0.180 4.180 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.226 0.774 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.838 10.047 7.173 25.961 hybrid contribution 0.406 1.511 0.172 1.574 sum -22.432 11.558 7.345 26.282 Atomic orbital electron populations 1.21918 0.95500 1.01587 1.01470 1.21253 0.95565 0.96125 0.98635 1.21950 1.01458 0.95969 1.01454 1.20087 0.95488 0.95891 0.97827 0.91795 1.21240 1.01424 0.95981 0.96826 1.21758 0.97091 1.00472 0.97371 1.21623 0.82885 0.97228 0.97634 1.46868 1.18496 1.05864 1.65179 1.16052 0.80543 0.85225 0.78230 1.90879 1.81335 1.13136 1.62028 1.45700 1.17235 1.13742 1.63128 1.21357 0.86481 0.94282 0.95415 1.19786 0.93318 0.96082 0.96684 1.20925 0.99664 0.97958 1.37390 0.90595 1.24996 0.95757 0.98023 0.94503 1.69903 1.07593 1.36352 1.39906 0.86756 0.78404 0.85791 0.78145 1.20242 1.21299 1.19106 1.21440 1.00899 0.80727 0.97915 1.21507 0.96078 1.01577 0.98870 0.92842 0.93012 0.92384 0.91274 0.92064 0.92968 0.92855 0.91413 0.91357 0.90900 0.91897 0.92721 0.89163 0.77368 0.92191 0.92316 0.96114 0.96547 0.92581 0.90923 0.90622 0.91269 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.67 37.15 0.32 -0.74 16 2 C -0.10 -0.79 2.47 -90.62 -0.22 -1.02 16 3 C -0.15 -1.14 8.69 37.16 0.32 -0.82 16 4 C -0.07 -0.63 1.30 -93.68 -0.12 -0.75 16 5 H 0.06 0.50 7.36 -51.93 -0.38 0.12 16 6 C -0.12 -1.09 4.83 -28.02 -0.14 -1.22 16 7 C -0.13 -1.09 5.71 -27.30 -0.16 -1.24 16 8 C 0.13 1.46 6.13 -2.95 -0.02 1.44 16 9 N -0.63 -8.12 2.24 -178.27 -0.40 -8.52 16 10 C 0.70 12.25 8.21 -86.93 -0.71 11.54 16 11 O -0.60 -12.84 15.62 5.28 0.08 -12.76 16 12 N -0.74 -12.93 5.41 -65.22 -0.35 -13.28 16 13 C 0.15 3.12 5.62 -4.04 -0.02 3.10 16 14 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 15 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 16 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 19 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 23 C 0.11 1.15 5.30 -4.08 -0.02 1.12 16 24 C -0.14 -1.34 4.67 -28.58 -0.13 -1.47 16 25 H 0.05 0.36 8.13 -51.93 -0.42 -0.06 16 26 H 0.05 0.35 8.13 -51.93 -0.42 -0.07 16 27 H 0.06 0.41 6.29 -51.93 -0.33 0.09 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.48 6.21 -51.93 -0.32 0.16 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 33 H 0.07 0.57 5.51 -51.93 -0.29 0.28 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.47 7.31 -51.93 -0.38 0.09 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.22 6.91 -51.93 -0.36 0.86 16 38 H 0.39 5.80 6.00 -40.82 -0.24 5.56 16 39 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.47 7.20 -51.92 -0.37 0.10 16 42 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 44 H 0.07 0.72 5.98 -51.93 -0.31 0.41 16 45 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.64 5.88 -51.92 -0.31 0.34 16 LS Contribution 351.78 15.07 5.30 5.30 Total: -1.00 -32.39 351.78 -9.01 -41.41 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.30 Total: 1.99 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.45 Total: -3.85 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.02 Total: -48.56 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.08 Total: -12.76 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.39 -9.01 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332052327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.443 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds